genome.fa.s3.2.7.7.80.10.50.1000.190.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  190  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63090080--63090183	20	5.2	20	65	17	63	36	17	31	14	1.90
63100968--63101141	50	3.5	50	82	3	206	21	27	21	28	1.99
63107074--63107116	22	2.0	22	81	9	52	37	20	11	30	1.89
63110654--63110800	43	3.4	43	75	0	159	21	12	23	42	1.87
63125098--63125130	8	4.1	8	100	0	66	24	0	0	75	0.80
63128942--63128979	20	2.0	20	94	5	69	36	5	0	57	1.21
63134861--63134933	34	2.1	34	82	9	87	32	10	16	39	1.83
63134873--63134938	34	1.9	34	90	6	107	30	12	15	42	1.83
63134885--63134970	34	2.5	34	83	3	93	30	12	13	43	1.82
63135128--63135211	25	3.4	25	69	12	73	38	23	14	23	1.92
63137229--63137276	12	3.8	12	83	8	60	54	0	8	37	1.31
63138880--63138974	30	3.2	30	77	5	102	21	29	34	14	1.93
63141318--63141370	28	2.0	27	85	7	72	43	15	0	41	1.46
63141529--63141720	57	3.1	62	76	15	202	28	17	6	47	1.72
63141528--63141720	63	3.3	57	74	15	187	27	17	6	48	1.72
63147353--63147392	21	1.9	21	94	0	71	65	0	2	32	1.06
63154874--63154931	29	1.9	31	83	13	77	53	8	15	22	1.69
63155319--63155356	20	2.1	19	85	14	53	52	0	2	44	1.14
63157592--63157620	12	2.3	13	94	5	51	48	0	0	51	1.00
63167384--63167437	26	2.1	26	96	0	99	35	24	16	24	1.95
63170593--63170857	132	2.0	133	99	0	523	41	21	10	27	1.85
63173376--63173409	17	2.1	17	88	5	52	32	17	0	50	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63175416--63175966	274	2.0	274	93	0	933	35	16	21	27	1.94
63182535--63182636	28	3.6	28	95	0	177	31	12	25	30	1.93
63183177--63183318	46	3.0	47	87	2	223	30	13	16	38	1.88
63183186--63183330	23	6.2	23	79	5	157	30	13	15	40	1.86
63184393--63184923	268	2.0	268	100	0	1062	52	9	9	28	1.64
63187639--63187685	20	2.3	20	100	0	94	31	8	31	27	1.87
63187962--63187991	9	3.3	9	90	0	51	60	26	0	13	1.34
63187962--63188001	18	2.4	17	91	8	64	57	30	0	12	1.36
63201862--63201910	21	2.4	21	89	3	73	38	4	4	53	1.39
63201854--63202029	10	18.1	10	66	14	59	32	2	3	60	1.28
63204620--63205046	143	3.0	143	95	0	773	28	16	23	31	1.96
63206089--63206181	20	4.8	19	69	23	61	41	1	3	53	1.24
63206175--63206291	62	1.9	59	87	5	171	41	4	4	50	1.41
63211178--63211270	20	4.8	19	69	23	61	41	1	3	53	1.24
63211264--63211380	62	1.9	59	87	5	171	41	4	4	50	1.41
63212056--63212140	27	3.1	27	81	1	89	18	30	22	28	1.97
63216598--63216674	33	2.3	33	84	4	102	15	23	12	48	1.80
63216756--63216893	58	2.4	58	81	2	143	21	26	13	38	1.90
63220600--63220642	23	1.9	23	86	13	63	39	23	0	37	1.55
63222036--63222085	25	2.0	25	92	0	82	40	14	6	40	1.70
63230635--63230666	16	2.0	16	93	0	55	34	28	6	31	1.82
63234385--63234417	14	2.5	13	90	9	50	39	27	9	24	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63234384--63234571	51	3.7	52	87	4	267	33	27	14	24	1.95
63235985--63236513	263	2.0	264	99	0	1051	38	6	10	43	1.67
63236967--63237012	24	1.9	24	90	0	74	39	2	8	50	1.46
63241245--63241296	24	2.2	24	85	0	68	34	3	9	51	1.53
63246507--63246675	42	4.0	42	100	0	338	26	23	7	42	1.80
63247145--63247176	6	5.3	6	100	0	64	15	68	0	15	1.21
63249713--63249747	16	2.2	16	89	0	52	0	28	0	71	0.86
63250308--63250361	24	2.2	25	83	3	65	29	9	12	48	1.73
63253144--63253221	40	2.0	40	89	0	120	28	21	12	37	1.90
63254490--63254536	25	1.9	24	86	4	67	40	21	23	14	1.90
63254492--63254599	24	4.5	24	77	5	94	39	17	23	19	1.92
63254642--63254702	26	2.3	26	86	5	79	34	22	26	16	1.95
63261008--63262407	707	2.0	710	85	2	1920	30	20	14	34	1.93
63265744--63265783	20	2.1	19	90	4	62	55	5	0	40	1.22
63266499--63266692	88	2.2	88	88	3	284	37	20	10	31	1.86
63267085--63267259	91	1.9	92	85	3	246	32	9	22	36	1.87
63270520--63270595	24	3.2	23	76	9	73	48	0	1	50	1.09
63270534--63270577	12	3.7	11	80	14	52	52	0	2	45	1.13
63270557--63270594	14	2.4	17	87	12	55	47	0	0	52	1.00
63270813--63270844	17	2.0	17	88	11	50	62	15	21	0	1.32
63271039--63271547	3	169.7	3	100	0	1018	33	0	0	66	0.92
63274662--63274755	45	2.1	45	87	0	134	29	22	20	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63274760--63274943	51	3.6	50	82	3	217	32	26	17	24	1.97
63274760--63274943	101	1.8	102	86	3	273	32	26	17	24	1.97
63278616--63278688	37	2.0	37	100	0	146	31	21	13	32	1.93
63283405--63283629	51	4.4	50	78	4	211	29	28	16	25	1.97
63285534--63285591	25	2.3	26	82	11	77	18	24	22	34	1.96
63285645--63285715	25	2.8	25	80	4	72	23	26	19	29	1.98
63288228--63288271	8	5.5	8	83	8	54	36	2	0	61	1.09
63289519--63289549	1	31.0	1	100	0	62	100	0	0	0	0.00
63291273--63291311	14	2.8	14	84	0	51	35	12	23	28	1.91
63299053--63299124	34	2.1	35	82	7	85	29	12	23	34	1.92
63301107--63301493	42	9.2	42	90	0	522	20	19	24	35	1.96
63302324--63302746	152	2.8	148	85	5	562	42	4	10	42	1.59
63303264--63303310	24	1.9	24	83	12	60	31	6	6	55	1.51
63305544--63305607	32	2.0	32	96	0	119	51	18	17	12	1.76
63314939--63314987	16	3.1	16	93	0	89	34	6	36	22	1.79
63314967--63315056	45	2.0	44	89	6	137	32	5	28	33	1.80
63322300--63322438	27	5.1	27	83	0	179	36	13	25	24	1.92
63322300--63322465	54	3.1	53	85	1	215	36	13	24	24	1.92
63322300--63322468	81	2.1	81	82	4	198	36	13	25	24	1.92
63325298--63325335	12	3.3	12	82	14	53	55	0	0	44	0.99
63343333--63343594	130	2.0	131	97	2	501	28	27	16	27	1.97
63345887--63346021	40	3.4	40	89	2	200	11	16	28	44	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63348291--63348377	25	3.5	25	75	6	86	33	19	26	20	1.97
63354761--63354827	25	2.7	24	75	11	64	32	20	29	16	1.95
63354773--63354865	24	3.8	24	69	9	73	33	21	27	17	1.96
63354933--63354987	25	2.2	25	86	0	83	38	18	25	18	1.93
63355134--63355189	20	2.7	21	72	10	53	50	12	0	37	1.41
63359705--63359833	42	3.1	42	76	8	127	44	14	22	18	1.86
63359725--63359827	21	4.9	21	62	8	57	42	15	22	19	1.88
63365567--63365616	20	2.5	19	75	9	55	52	2	12	34	1.50
63366231--63366359	25	5.2	24	68	15	75	20	25	20	32	1.97
63366369--63366416	24	2.0	23	88	4	69	16	22	20	39	1.92
63366236--63366412	73	2.4	72	80	6	203	19	25	20	34	1.96
63368374--63368410	15	2.4	16	82	13	51	72	5	0	21	1.04
63373113--63373142	6	5.0	6	100	0	60	66	0	0	33	0.92
63373560--63373607	21	2.2	22	85	7	71	58	2	2	37	1.22
63373549--63373626	30	2.6	30	81	6	77	58	1	1	38	1.14
63390865--63390942	25	3.2	24	75	14	79	42	1	3	52	1.27
63390882--63391081	62	3.1	62	67	13	147	43	3	5	48	1.41
63403247--63403280	17	2.1	17	88	5	52	76	11	0	11	1.02
63404110--63404134	12	2.1	12	100	0	50	40	0	8	52	1.31
63419524--63419569	20	2.3	20	84	0	65	45	15	13	26	1.82
63421489--63421539	26	2.0	25	88	3	75	66	3	5	23	1.30
63421619--63421658	9	4.6	9	84	3	55	67	7	12	12	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63423415--63423524	44	2.5	44	85	2	141	30	21	20	28	1.98
63423653--63423811	50	3.2	50	63	7	115	27	23	19	29	1.98
63423620--63423927	100	3.1	100	89	0	465	26	22	20	30	1.98
63423669--63423826	50	3.2	50	66	3	129	26	22	19	31	1.98
63423867--63423986	50	2.4	51	80	6	120	25	29	19	26	1.98
63423753--63424364	267	2.3	266	91	0	981	25	26	21	27	1.99
63436396--63436445	26	2.0	25	88	7	75	68	0	6	26	1.13
63436681--63436721	19	2.1	18	86	13	55	63	7	4	24	1.40
63436721--63436762	18	2.1	20	75	25	52	61	4	0	33	1.17
63442242--63442289	19	2.5	19	72	3	51	16	10	4	68	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210