genome.fa.s3.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  84  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29159709--29159869	45	3.6	44	83	0	162	29	19	24	26	1.99
29159583--29159877	44	6.7	45	75	8	180	29	19	23	27	1.98
29160707--29160731	13	1.9	13	100	0	50	12	0	0	88	0.53
29161477--29161571	37	2.4	38	77	22	90	31	2	3	63	1.22
29161720--29161754	14	2.6	13	86	8	52	40	0	8	51	1.33
29163169--29163309	29	4.9	29	77	2	131	17	2	24	56	1.54
29165547--29165640	29	3.3	30	76	16	85	31	1	6	60	1.29
29165654--29165736	36	2.4	33	80	13	87	36	2	1	60	1.18
29165547--29165769	10	24.0	9	68	19	113	34	2	3	59	1.27
29168078--29168357	9	30.3	9	68	16	139	33	1	4	61	1.22
29168078--29168171	29	3.3	30	76	16	85	31	1	6	60	1.29
29168078--29168352	19	14.3	19	67	19	96	33	1	4	61	1.23
29168157--29168247	28	3.3	28	83	13	93	32	1	2	63	1.13
29168093--29168352	10	27.7	10	68	18	68	33	1	4	61	1.23
29169040--29169074	2	17.5	2	100	0	70	51	0	0	48	1.00
29177117--29177159	22	2.0	22	91	8	72	27	2	0	69	1.00
29177119--29177163	20	2.1	22	88	8	67	35	2	0	62	1.08
29189296--29189321	3	8.7	3	100	0	52	34	0	0	65	0.93
29192774--29192811	19	2.0	20	84	5	51	60	15	0	23	1.35
29194141--29194172	5	6.4	5	92	0	55	62	21	0	15	1.32
29195629--29195825	99	2.0	99	92	0	331	27	11	24	36	1.90
29206748--29207052	132	2.3	132	94	0	529	31	19	24	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29207043--29207164	44	2.8	43	76	8	131	31	20	19	27	1.97
29208411--29208447	19	1.9	19	94	0	65	43	0	13	43	1.44
29209336--29209532	99	2.0	99	90	2	315	27	10	24	37	1.89
29211783--29211929	73	2.0	73	87	0	213	36	7	14	40	1.75
29214852--29214937	25	3.4	25	70	12	68	18	29	19	32	1.96
29214903--29214964	25	2.5	25	89	0	88	19	27	25	27	1.99
29217078--29217238	42	3.8	42	85	4	200	31	13	26	29	1.93
29217078--29217237	85	1.9	84	83	6	207	31	13	25	30	1.93
29225099--29225151	20	2.7	20	93	0	79	47	3	7	41	1.50
29228444--29228483	21	1.9	21	100	0	80	27	25	20	27	1.99
29229033--29229074	19	2.2	19	86	0	57	45	0	30	23	1.53
29235476--29235540	16	4.1	16	95	0	121	36	4	36	21	1.74
29235520--29235614	45	2.1	44	88	5	138	30	5	29	34	1.80
29240563--29240654	40	2.3	40	84	0	121	32	20	3	43	1.68
29240624--29240671	13	3.7	13	80	5	53	43	20	2	33	1.64
29240617--29240678	26	2.3	27	83	10	83	37	19	1	41	1.61
29242017--29242069	18	2.9	18	80	2	61	41	45	1	11	1.51
29242173--29242257	9	9.4	9	84	0	116	24	10	23	41	1.86
29256964--29257042	32	2.5	32	84	10	108	31	20	17	30	1.96
29259016--29259067	19	2.7	19	88	5	70	53	5	0	40	1.25
29259147--29259171	8	3.1	8	100	0	50	64	0	0	36	0.94
29265847--29265878	2	16.0	2	100	0	64	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29268794--29268835	18	2.3	19	80	12	52	9	40	33	16	1.81
29275610--29275635	10	2.6	10	100	0	52	23	0	0	76	0.78
29300313--29300383	31	2.3	31	82	2	90	29	7	12	50	1.66
29301829--29301854	12	2.2	12	100	0	52	26	15	19	38	1.91
29309973--29309998	5	5.2	5	100	0	52	0	19	42	38	1.51
29312690--29312723	12	2.8	12	90	0	50	26	11	2	58	1.47
29313126--29313152	3	9.0	3	100	0	54	33	0	0	66	0.92
29314495--29314626	44	3.0	44	100	0	264	13	22	27	36	1.92
29316587--29316695	41	2.6	41	91	1	173	23	28	20	27	1.99
29320323--29320434	57	1.9	58	87	5	165	30	10	23	35	1.89
29320323--29320454	57	2.3	57	83	10	162	29	11	21	37	1.89
29320663--29321016	138	2.6	138	82	0	404	18	20	25	35	1.95
29320662--29321065	69	5.9	69	80	1	353	18	19	25	36	1.94
29320728--29321085	138	2.6	138	81	0	419	18	18	25	36	1.94
29322956--29322992	5	7.4	5	90	0	56	35	0	21	43	1.53
29324550--29324589	21	1.9	21	85	10	55	0	22	2	75	0.93
29338219--29338258	1	40.0	1	100	0	80	100	0	0	0	0.00
29338171--29338418	126	2.0	126	91	1	408	59	8	8	23	1.54
29338954--29339079	42	3.0	42	89	0	189	25	10	19	45	1.81
29339804--29339858	23	2.4	23	96	0	101	36	16	18	29	1.92
29341588--29341631	24	1.9	24	81	9	56	29	2	9	59	1.41
29342117--29342165	25	1.9	26	84	12	66	30	4	20	44	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29343582--29343697	58	2.0	58	91	0	187	29	14	24	31	1.95
29344955--29345002	24	2.0	24	91	0	78	47	10	22	18	1.79
29345087--29345222	42	3.2	41	84	3	164	15	20	19	44	1.86
29345087--29345200	21	5.4	21	68	3	77	15	21	19	43	1.87
29348490--29348555	3	22.0	3	100	0	132	33	0	0	66	0.92
29352703--29352729	7	3.9	7	100	0	54	59	0	0	40	0.98
29352930--29352981	19	2.5	20	84	12	61	44	1	9	44	1.48
29352927--29352980	23	2.5	21	84	6	72	44	1	11	42	1.50
29353032--29353065	3	11.3	3	100	0	68	67	32	0	0	0.91
29353064--29353097	3	11.3	3	100	0	68	67	0	0	32	0.91
29353162--29354136	490	2.0	489	97	0	1860	33	22	20	23	1.97
29355009--29355272	50	5.4	49	73	10	247	25	19	21	34	1.97
29355049--29355689	47	13.3	47	69	8	306	23	20	23	31	1.98
29355009--29355316	50	6.3	49	72	11	231	25	20	21	33	1.97
29355015--29355705	96	7.2	96	86	5	747	23	20	23	32	1.98
29356110--29356196	44	2.0	44	93	0	147	39	24	10	26	1.87
29357119--29357153	12	3.0	11	88	12	52	0	11	2	85	0.69
29358305--29358344	6	6.3	6	91	5	53	5	20	0	75	0.99
29358301--29358351	19	2.5	20	78	12	59	5	23	0	70	1.09
29358371--29358415	6	7.8	6	87	7	67	0	0	15	84	0.62
29358362--29358414	24	2.2	24	83	3	63	3	1	13	81	0.92
29369470--29369497	4	7.0	4	100	0	56	25	0	25	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29373971--29374176	101	2.0	101	96	0	376	33	18	16	31	1.93
29379661--29379690	15	2.0	15	93	0	51	43	0	0	56	0.99
29379869--29379893	12	2.1	12	100	0	50	24	0	0	76	0.80
29389571--29389598	14	2.0	14	100	0	56	50	0	21	28	1.49
29391568--29391604	10	3.2	12	85	14	51	86	0	5	8	0.70
29394614--29394638	3	8.3	3	100	0	50	32	68	0	0	0.90
29397009--29397056	20	2.3	21	85	7	62	56	0	6	37	1.25
29399063--29399101	20	2.0	20	89	0	60	30	25	35	7	1.84
29400794--29400833	6	6.5	6	91	2	62	0	62	0	37	0.95
29407702--29407735	14	2.5	14	95	4	61	14	0	35	50	1.44
29407864--29407910	24	1.9	25	82	4	60	68	6	6	19	1.34
29409842--29409906	27	2.4	27	75	17	71	12	10	3	73	1.20
29416506--29416549	22	2.0	21	87	12	63	54	9	0	36	1.32
29417416--29417485	2	35.0	2	94	0	122	47	52	0	0	1.00
29428625--29428686	26	2.4	26	88	0	97	35	12	12	38	1.82
29428797--29428943	73	2.0	74	97	1	278	23	31	26	18	1.97
29428968--29429000	17	1.9	17	100	0	66	42	9	0	48	1.35
29437619--29437648	13	2.3	13	94	0	51	23	10	13	53	1.69
29438097--29438142	21	2.2	21	80	7	58	54	4	0	41	1.20
29441318--29441366	9	5.4	9	95	0	89	42	22	10	24	1.84
29441994--29442148	77	2.0	78	98	1	303	42	14	7	35	1.74
29448557--29448581	2	12.5	2	100	0	50	52	48	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29452274--29452317	20	2.1	21	87	4	63	68	0	2	29	1.02
29454315--29454377	29	2.1	30	82	5	74	53	1	11	33	1.46
29456303--29456342	21	1.9	21	90	10	64	67	5	0	27	1.11
29456464--29456496	12	2.8	12	86	13	50	30	0	3	66	1.06
29458376--29458448	23	3.3	23	82	3	87	13	27	26	32	1.94
29460271--29460371	41	2.4	42	79	9	118	32	31	14	20	1.93
29471395--29471555	41	3.9	42	80	8	152	31	26	16	26	1.97
29471443--29471585	40	3.5	40	79	11	123	32	23	18	26	1.97
29471575--29471614	21	1.9	21	85	10	55	25	22	20	32	1.98
29473481--29473530	25	1.9	27	84	8	68	40	12	10	38	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210