genome.fa.s3.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  92  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31720349--31720385	15	2.5	15	95	0	65	67	8	0	24	1.17
31725289--31725346	24	2.5	24	86	8	75	46	13	6	32	1.70
31729485--31729592	25	4.3	25	77	4	101	25	19	25	29	1.98
31730939--31730996	24	2.5	24	86	8	75	46	13	6	32	1.70
31735994--31736023	13	2.3	13	94	0	51	40	26	3	30	1.72
31741032--31741075	18	2.5	18	96	3	81	15	0	20	63	1.31
31744326--31744414	17	5.2	16	81	8	79	38	2	13	46	1.56
31744330--31744436	34	3.2	34	81	6	112	35	3	14	46	1.62
31744352--31744437	17	5.1	18	80	10	76	34	3	15	46	1.62
31744369--31744466	17	5.9	16	73	19	69	31	6	15	46	1.70
31759035--31759085	27	1.9	27	84	4	68	15	9	11	62	1.53
31764923--31765011	45	2.0	45	86	0	124	32	23	16	26	1.96
31765022--31765208	51	3.7	51	72	11	168	32	25	17	25	1.97
31765020--31765203	101	1.8	101	86	3	271	32	26	16	25	1.96
31766623--31766653	15	2.1	15	100	0	62	25	6	41	25	1.79
31767564--31767752	94	2.0	94	100	0	378	24	7	24	43	1.79
31768029--31768071	23	1.9	23	86	13	63	37	0	0	62	0.95
31771830--31771882	26	2.0	26	100	0	106	28	18	22	30	1.98
31773158--31773735	127	4.5	127	90	2	853	30	17	23	28	1.97
31776751--31776865	56	2.0	56	81	8	135	28	0	29	40	1.62
31776736--31776835	21	4.7	21	83	11	132	28	1	30	41	1.63
31776834--31777461	65	9.7	65	85	5	749	25	0	28	45	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31776736--31777453	130	5.6	130	84	6	789	26	0	28	44	1.59
31776834--31777461	22	29.0	22	83	4	751	25	0	28	45	1.58
31778005--31778047	18	2.4	18	80	7	52	46	11	27	13	1.78
31779799--31779848	19	2.6	19	77	3	55	62	0	0	38	0.96
31779902--31779976	11	6.7	11	74	18	66	44	2	28	25	1.68
31779902--31779976	22	3.3	23	83	9	93	44	2	28	25	1.68
31788412--31788440	14	2.0	15	93	6	51	48	20	3	27	1.66
31788631--31788764	40	3.4	39	80	7	155	32	26	17	23	1.96
31796106--31796138	17	1.9	17	88	11	50	36	0	0	63	0.95
31798719--31798762	20	2.2	20	84	4	54	70	2	2	25	1.10
31798737--31798770	16	2.2	15	89	5	50	70	0	0	29	0.87
31798735--31798772	15	2.5	15	84	12	51	65	0	0	34	0.93
31798731--31798795	27	2.3	27	84	5	85	66	0	0	33	0.92
31799423--31799551	27	4.7	27	83	4	152	37	10	22	29	1.88
31811909--31812103	105	1.9	105	81	2	239	33	15	24	26	1.95
31814240--31814342	48	2.1	48	94	0	179	34	16	12	35	1.87
31815550--31815591	2	21.0	2	90	0	66	45	0	50	4	1.23
31820396--31820424	12	2.3	13	94	5	51	6	0	3	89	0.57
31820323--31820564	116	2.1	117	99	0	477	33	5	3	57	1.39
31820512--31820540	12	2.3	13	94	5	51	6	0	3	89	0.57
31820606--31820641	11	3.0	12	88	12	56	36	0	0	63	0.94
31823233--31823328	50	1.9	50	95	0	174	34	13	9	42	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31831792--31831882	37	2.4	37	80	12	96	42	3	5	48	1.42
31833165--31833195	14	2.2	14	100	0	62	32	6	19	41	1.77
31835326--31835356	15	2.1	15	93	0	53	25	32	3	38	1.72
31839373--31839403	15	2.1	15	93	0	53	25	32	3	38	1.72
31839560--31839653	47	2.0	46	97	2	179	57	6	8	27	1.53
31851295--31851333	20	2.0	20	94	0	69	33	7	33	25	1.84
31856403--31856602	105	1.9	105	84	2	267	33	17	23	26	1.96
31858657--31858739	41	2.0	43	88	4	125	32	13	27	26	1.93
31871859--31871935	33	2.3	32	82	6	91	32	18	23	25	1.97
31871754--31871983	105	2.3	99	82	6	255	32	17	24	25	1.97
31874588--31874787	99	2.0	101	98	1	386	46	23	9	21	1.80
31880854--31881118	72	3.7	71	75	6	228	39	15	19	26	1.91
31880848--31881056	48	4.3	48	77	4	179	39	15	19	25	1.91
31881024--31881161	47	3.0	46	77	13	131	39	15	18	26	1.91
31880848--31881150	24	12.7	23	70	12	148	38	15	19	26	1.92
31882469--31882638	43	4.0	44	78	4	150	29	15	22	31	1.95
31884474--31884777	59	5.2	59	75	7	226	37	9	21	31	1.86
31886234--31886295	31	2.0	31	100	0	124	22	22	35	19	1.96
31887849--31887906	30	1.9	30	85	0	80	17	43	27	12	1.84
31890874--31891042	16	10.2	16	68	21	82	21	4	1	72	1.11
31890875--31890958	21	4.1	20	77	18	84	22	2	0	75	0.92
31890874--31890928	5	10.8	5	78	18	60	21	0	0	78	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31891977--31892012	13	2.8	13	91	0	54	75	2	2	19	1.06
31901535--31901570	19	1.9	19	88	5	56	27	11	2	58	1.46
31902958--31903328	130	2.8	131	81	8	369	24	9	9	55	1.63
31903085--31903414	141	2.3	139	80	11	341	25	9	9	55	1.61
31903395--31903492	47	2.2	47	78	12	107	33	5	1	60	1.26
31903472--31903515	21	2.1	21	87	8	63	50	0	0	50	1.00
31903507--31903847	143	2.4	139	78	9	332	55	9	9	26	1.62
31904133--31904163	5	6.2	5	92	0	53	38	19	19	22	1.93
31905042--31905078	9	4.1	9	92	0	65	29	10	13	45	1.77
31907102--31907129	3	9.3	3	100	0	56	32	0	0	67	0.91
31907998--31908059	27	2.3	27	81	10	81	32	25	20	20	1.98
31910178--31910225	8	5.8	8	76	9	51	2	8	6	83	0.88
31910822--31910920	3	33.7	3	69	15	55	30	5	4	60	1.36
31910822--31910918	15	6.6	15	73	14	69	30	5	4	59	1.38
31910856--31911452	293	2.1	291	93	3	1042	33	7	5	53	1.52
31912196--31912237	19	2.2	19	100	0	84	38	11	14	35	1.83
31929849--31929883	16	2.2	16	94	0	61	34	2	22	40	1.69
31931751--31932068	29	10.9	29	83	4	273	35	12	27	24	1.91
31931751--31932068	87	3.6	87	80	4	334	35	12	27	24	1.91
31936400--31936661	130	2.0	131	99	0	517	49	7	8	34	1.61
31944605--31944650	19	2.3	20	85	11	67	47	8	17	26	1.76
31944615--31944653	19	2.1	19	100	0	78	46	10	15	28	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31947425--31947458	17	2.0	17	88	0	50	67	8	8	14	1.41
31947907--31947955	21	2.3	22	79	10	57	26	34	4	34	1.76
31964713--31964828	43	2.7	43	91	0	205	30	16	31	21	1.95
31964713--31964871	84	1.9	84	86	5	230	30	16	29	23	1.97
31972046--31972154	25	4.4	25	85	0	137	24	23	17	33	1.96
31972152--31972199	25	2.0	24	84	12	62	33	20	22	22	1.97
31974712--31974939	28	8.2	27	74	7	129	33	21	15	29	1.94
31974712--31974918	83	2.5	82	78	6	227	33	21	14	30	1.93
31974863--31974941	29	2.7	30	77	13	85	32	20	17	29	1.95
31974953--31975021	29	2.4	29	81	11	72	21	23	20	34	1.96
31974976--31975034	29	2.0	29	83	0	73	22	20	22	35	1.96
31975169--31975300	53	2.5	52	81	1	147	28	27	12	32	1.92
31979668--31979790	27	4.6	27	78	9	76	26	17	17	39	1.91
31979704--31979842	54	2.6	54	88	2	199	23	16	20	40	1.91
31979699--31979842	27	5.3	27	83	1	164	22	16	20	40	1.91
31980084--31980147	20	3.2	20	93	2	112	20	37	25	17	1.93
31985897--31985936	19	2.1	19	85	4	53	15	7	12	65	1.47
31991259--31991312	27	2.0	28	88	3	83	51	11	7	29	1.64
31992105--31992145	21	2.0	21	90	0	64	48	2	4	43	1.37
31992756--31992798	21	2.0	21	82	8	52	27	0	4	67	1.10
31992968--31993020	27	2.0	27	82	10	65	39	3	3	52	1.37
31996643--31996682	21	1.9	21	89	0	62	50	2	12	35	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31998110--31998344	49	4.8	49	74	13	128	36	15	20	27	1.93
31999629--31999902	133	2.1	134	98	0	532	38	11	3	45	1.58
32009768--32009836	16	4.3	16	90	0	111	36	4	36	23	1.75
32009822--32009914	44	2.1	46	89	4	145	32	3	29	35	1.73
32009818--32009923	44	2.5	41	75	18	108	33	2	29	34	1.72
32011414--32011472	15	3.8	15	82	8	82	55	20	10	13	1.66
32011414--32011519	32	3.4	32	75	16	114	59	19	6	14	1.57
32011467--32011531	5	13.2	5	73	20	57	63	20	1	15	1.39
32011452--32011531	25	3.0	25	82	10	81	61	20	3	15	1.49
32011414--32011518	16	6.8	16	74	17	80	59	20	6	14	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210