genome.fa.s3.2.7.7.80.10.50.1000.202.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  202  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67309899--67309979	29	2.8	29	98	0	153	24	8	13	53	1.68
67311150--67311189	13	3.1	13	79	13	55	35	25	7	32	1.84
67311466--67311514	16	3.1	16	96	0	89	36	2	36	24	1.67
67311727--67311768	15	2.7	16	82	14	52	52	2	0	45	1.13
67311736--67311777	15	2.9	15	82	10	52	52	0	0	47	1.00
67311712--67311993	131	2.2	132	73	3	311	45	5	1	40	1.38
67315134--67315171	20	1.9	20	94	0	67	39	15	31	13	1.86
67332984--67333018	18	2.1	16	89	10	52	45	0	0	54	0.99
67348064--67348136	34	2.1	34	100	0	146	36	16	10	35	1.84
67350559--67350587	5	5.8	5	100	0	58	79	0	0	20	0.74
67352231--67352269	3	13.0	3	100	0	78	66	0	0	33	0.92
67354069--67354572	263	1.9	263	94	0	882	28	24	17	30	1.97
67355635--67355911	124	2.2	126	93	2	470	33	20	15	31	1.93
67362017--67362068	24	2.2	24	85	0	68	38	3	7	50	1.50
67366636--67366708	33	2.2	34	80	7	87	58	12	4	24	1.51
67366803--67366875	33	2.2	34	80	7	87	58	12	4	24	1.51
67366575--67366913	167	2.0	168	99	0	671	56	11	4	28	1.53
67374563--67374593	13	2.4	13	88	0	53	0	12	0	87	0.55
67383624--67383901	114	2.5	108	91	6	443	41	14	16	26	1.88
67384035--67384275	114	2.1	111	82	10	308	25	15	14	43	1.86
67389069--67389111	21	2.0	21	82	8	52	60	16	16	6	1.56
67399967--67400012	17	2.6	18	77	19	51	41	4	2	52	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67401662--67401817	75	2.1	75	92	0	258	35	26	17	20	1.94
67402104--67402169	16	4.1	16	96	0	123	27	0	34	37	1.57
67410200--67410277	31	2.5	31	80	14	81	62	1	0	35	1.03
67411596--67411632	9	4.1	9	85	0	56	48	13	8	29	1.71
67418906--67418940	13	2.8	12	83	8	52	28	0	2	68	1.04
67418956--67418980	9	2.8	9	100	0	50	68	0	0	32	0.90
67419069--67419104	19	2.0	17	89	10	54	66	11	2	19	1.35
67422744--67422814	24	3.0	24	82	0	88	15	8	54	21	1.67
67425236--67425383	76	2.0	75	86	5	212	36	8	11	43	1.72
67427148--67427186	16	2.3	17	82	13	53	76	7	2	12	1.09
67428103--67428142	19	2.2	17	86	8	53	75	0	7	17	1.03
67428939--67429703	44	17.8	44	73	10	356	28	21	18	31	1.97
67429038--67429664	170	3.7	170	94	0	1044	28	22	18	30	1.97
67428881--67429489	214	2.8	211	73	11	534	28	20	19	31	1.97
67442361--67442398	20	1.9	20	100	0	76	76	5	13	5	1.13
67443822--67443882	21	3.0	20	82	4	68	36	27	8	27	1.85
67446900--67446948	19	2.4	21	83	10	57	73	6	2	18	1.14
67452764--67452802	16	2.4	16	86	0	60	53	5	15	25	1.62
67452887--67452989	51	2.0	51	98	0	197	29	12	20	37	1.89
67454123--67454209	25	3.6	25	70	14	65	41	2	3	52	1.31
67454136--67454254	62	1.9	63	87	5	179	43	2	5	48	1.38
67455273--67455534	43	6.1	43	76	5	219	30	25	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67464028--67464070	23	1.9	22	86	13	61	46	2	2	48	1.27
67464822--67464864	19	2.3	18	80	7	50	53	2	2	41	1.26
67464855--67464895	22	1.9	22	85	5	57	58	4	0	36	1.20
67465329--67465368	20	2.2	17	86	13	53	55	2	7	35	1.42
67465408--67465455	21	2.4	20	79	6	53	50	0	10	39	1.37
67465486--67465523	20	1.9	20	88	0	58	71	0	2	26	1.00
67465486--67465529	20	2.2	20	83	0	52	75	0	2	22	0.92
67481202--67481253	24	2.2	23	93	3	86	42	1	0	55	1.10
67481204--67481266	24	2.7	25	76	13	73	47	3	0	49	1.17
67481925--67481966	19	2.2	20	76	16	54	52	0	4	42	1.22
67483516--67483563	15	3.2	15	71	11	53	52	6	4	37	1.46
67485012--67485048	19	1.9	19	88	0	56	32	2	0	64	1.07
67488498--67488575	41	1.9	41	86	5	113	32	26	19	21	1.97
67488662--67488783	64	1.9	64	84	3	165	40	14	8	36	1.76
67488812--67488937	60	2.1	61	81	7	143	42	15	3	38	1.65
67502701--67503037	168	2.0	169	99	0	667	33	13	11	40	1.81
67506151--67506201	26	2.0	26	100	0	102	21	7	23	47	1.77
67506561--67506770	106	2.0	106	100	0	420	30	19	18	31	1.95
67508198--67508229	16	2.0	16	100	0	64	18	18	25	37	1.94
67515544--67515569	13	2.0	13	100	0	52	46	0	23	30	1.53
67515834--67516109	50	5.6	50	78	7	278	27	21	28	21	1.99
67515834--67516116	99	2.8	98	77	4	289	27	21	28	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67517705--67517755	23	2.2	23	92	0	84	41	17	9	31	1.82
67525209--67525244	9	3.9	9	88	3	54	30	22	25	22	1.99
67526314--67526379	29	2.2	30	89	2	98	27	13	24	34	1.93
67527016--67527044	7	4.1	7	100	0	58	86	0	0	13	0.58
67539185--67539220	18	2.0	18	88	0	54	16	5	19	58	1.58
67541005--67541228	111	2.0	112	99	0	441	38	6	10	44	1.65
67541264--67541296	17	2.0	17	88	5	50	48	0	3	48	1.17
67541271--67541318	21	2.3	21	81	0	51	43	2	2	52	1.24
67541265--67541324	13	4.8	13	77	6	61	45	1	3	50	1.28
67541265--67541323	25	2.4	25	82	0	73	44	1	3	50	1.28
67546834--67546881	25	2.0	25	88	8	73	35	16	18	29	1.93
67546932--67547004	16	4.6	16	75	0	74	42	2	27	27	1.69
67548355--67548407	26	2.0	26	100	0	106	52	3	11	32	1.55
67548348--67548402	26	2.3	22	75	21	65	52	3	9	34	1.50
67558498--67558529	14	2.3	14	94	0	55	34	28	15	21	1.94
67558445--67558580	65	2.1	65	83	2	166	31	28	16	23	1.96
67558517--67558698	51	3.6	50	79	6	197	28	29	17	25	1.97
67560711--67560745	4	8.8	4	93	0	61	45	0	2	51	1.16
67574603--67574628	13	2.0	13	100	0	52	61	7	7	23	1.49
67575246--67575283	12	2.9	13	88	7	51	78	2	2	15	0.97
67576103--67576766	44	15.0	44	74	5	480	27	24	18	29	1.98
67576077--67576766	89	7.8	89	82	4	831	27	24	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67576884--67577014	44	2.9	45	73	5	147	27	23	17	31	1.97
67577139--67577233	45	2.2	44	84	3	120	29	22	17	30	1.97
67581144--67581183	19	2.0	20	85	4	55	47	10	20	22	1.79
67582943--67582968	13	2.0	13	100	0	52	61	7	7	23	1.49
67582943--67582976	12	2.8	12	90	4	50	55	8	8	26	1.59
67583236--67583363	62	2.1	60	91	2	211	59	0	9	31	1.29
67583465--67583524	18	3.3	19	81	9	63	66	0	6	26	1.16
67583483--67583524	9	4.7	9	82	11	50	71	0	2	26	0.98
67584234--67584273	12	3.1	13	89	7	55	77	2	2	17	0.99
67584239--67584273	6	5.7	6	86	6	52	80	2	0	17	0.84
67594493--67594555	27	2.3	27	86	5	83	30	20	17	31	1.96
67594503--67594559	27	2.1	27	93	0	96	26	21	15	36	1.93
67600275--67600399	64	2.0	64	88	3	189	49	3	10	36	1.53
67600637--67600675	18	2.3	16	86	8	51	30	0	0	69	0.89
67600638--67600688	26	1.9	27	92	4	86	29	0	1	68	1.00
67604709--67604734	13	2.0	13	100	0	52	53	30	0	15	1.42
67617418--67617478	31	2.0	31	90	0	95	32	16	8	42	1.78
67619733--67620048	156	2.0	156	98	0	605	32	19	18	29	1.96
67623286--67623311	2	13.0	2	100	0	52	50	0	0	50	1.00
67634039--67634096	31	1.9	31	89	3	91	25	6	1	65	1.27
67634080--67634154	19	3.8	20	71	15	75	28	4	4	64	1.30
67634039--67634123	30	2.8	30	82	8	84	28	5	2	63	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67634154--67634205	26	1.9	28	84	7	72	38	0	3	57	1.17
67634262--67634452	89	2.1	89	87	2	267	35	9	20	34	1.85
67635103--67635161	29	2.0	29	100	0	118	37	20	3	38	1.69
67635938--67635998	30	2.0	31	93	3	106	37	0	42	19	1.52
67636127--67636157	9	3.4	9	90	0	53	38	22	12	25	1.90
67638620--67638786	83	2.0	83	98	0	325	28	15	11	44	1.82
67645931--67645985	28	2.0	29	85	7	78	23	7	5	63	1.41
67647221--67647386	20	8.5	19	70	20	76	63	4	1	29	1.25
67647244--67647386	10	14.4	10	64	20	59	65	4	1	29	1.20
67647281--67647321	21	2.0	20	85	4	55	60	4	0	34	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210