genome.fa.s3.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  134  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44379160--44379263	17	6.2	16	73	15	61	34	7	10	47	1.67
44379179--44379259	34	2.4	32	82	14	83	34	9	9	45	1.71
44385227--44385259	17	1.9	17	100	0	66	57	12	12	18	1.64
44396093--44396161	32	2.2	32	86	5	95	40	24	4	30	1.74
44396250--44396281	17	1.9	16	93	6	55	59	9	0	31	1.29
44397650--44397834	49	3.7	50	79	5	162	27	23	26	22	1.99
44398035--44398073	12	3.2	12	85	0	51	56	5	20	17	1.60
44407272--44407392	59	2.1	59	100	0	242	30	4	28	35	1.79
44410092--44410137	19	2.4	18	85	10	56	71	0	2	26	0.97
44416482--44416564	41	2.0	41	97	0	157	39	14	15	30	1.87
44425588--44425622	18	1.9	18	88	0	52	71	8	11	8	1.31
44426902--44427072	27	6.4	27	81	1	182	19	18	19	42	1.90
44435391--44435432	12	3.2	13	83	13	50	76	2	4	16	1.07
44441871--44441987	44	2.6	45	84	1	164	45	13	17	23	1.84
44444447--44444483	19	1.9	19	94	0	65	13	35	13	37	1.84
44447831--44447926	50	1.9	49	85	2	129	25	26	30	18	1.98
44448223--44448261	12	3.2	12	88	0	60	56	7	20	15	1.63
44455237--44455362	50	2.5	50	83	2	146	27	19	30	23	1.98
44462873--44462936	25	2.5	24	80	9	65	31	17	28	23	1.97
44466809--44466951	41	3.5	41	81	7	141	29	20	24	25	1.99
44475749--44475792	23	1.9	22	82	17	54	36	25	0	38	1.56
44475934--44476062	51	2.5	51	82	8	147	34	25	15	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44480045--44480111	32	2.1	32	97	0	125	37	14	8	38	1.78
44483440--44483530	25	3.7	25	71	7	60	34	16	24	25	1.95
44483606--44483672	26	2.7	25	77	6	75	35	17	23	22	1.95
44485146--44485200	11	5.2	11	84	8	78	38	7	0	54	1.28
44485146--44485200	21	2.6	21	91	2	83	38	7	0	54	1.28
44489430--44489504	37	2.0	37	97	0	141	24	30	13	32	1.93
44497147--44497607	237	1.9	237	86	2	649	38	22	13	26	1.90
44501381--44501475	25	3.8	25	78	1	82	35	27	11	25	1.90
44507632--44507674	24	1.9	24	86	13	65	30	13	20	34	1.92
44508095--44508128	17	2.0	17	88	11	52	5	17	0	76	0.98
44508093--44508140	22	2.2	21	85	14	62	8	16	0	75	1.04
44514600--44514752	62	2.5	61	82	3	171	23	21	29	25	1.99
44516043--44516080	14	2.8	13	92	7	67	36	10	5	47	1.61
44516245--44516451	69	3.0	68	81	2	243	20	22	15	41	1.90
44516245--44516451	34	6.0	34	85	1	225	20	22	15	41	1.90
44516264--44516451	103	1.8	103	90	0	304	20	23	14	40	1.90
44520802--44520846	21	2.1	22	84	12	58	15	6	6	71	1.29
44520878--44520920	21	2.0	23	81	9	54	32	11	11	44	1.77
44521645--44521673	6	4.8	6	100	0	58	0	17	0	82	0.66
44523208--44523245	20	1.9	20	88	0	58	31	5	13	50	1.63
44524422--44524571	41	3.7	41	88	0	201	17	19	26	36	1.94
44539835--44539864	8	3.9	8	95	4	53	13	0	10	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44539983--44540026	21	2.1	21	82	0	52	61	2	2	34	1.21
44540648--44540684	10	3.5	11	82	10	51	62	0	37	0	0.96
44561401--44561444	19	2.3	19	84	7	54	15	34	47	2	1.58
44568691--44568717	12	2.2	12	100	0	54	14	40	0	44	1.46
44571616--44571669	16	3.4	16	89	0	81	27	33	1	37	1.68
44572379--44572440	26	2.4	26	97	0	115	41	11	0	46	1.39
44572445--44572475	11	2.8	11	90	0	53	87	12	0	0	0.55
44572503--44572562	27	2.2	27	90	0	93	26	23	33	16	1.96
44572514--44572578	27	2.4	27	89	0	94	23	26	32	18	1.97
44572659--44572700	11	3.9	11	78	6	50	69	0	28	2	1.01
44572829--44572857	3	9.7	3	100	0	58	0	0	31	68	0.89
44572958--44572996	3	13.0	3	88	0	60	30	0	5	64	1.15
44572716--44572974	144	1.8	142	94	1	464	25	1	13	58	1.44
44573763--44573807	18	2.5	18	96	0	81	28	4	51	15	1.63
44577661--44577685	12	2.1	12	100	0	50	24	36	24	16	1.94
44577840--44577906	9	7.4	9	86	0	80	43	25	8	22	1.82
44577979--44578056	39	2.1	36	81	11	88	19	2	28	50	1.61
44579431--44579486	27	2.1	27	93	0	94	8	32	14	44	1.76
44580045--44580218	40	4.7	37	76	14	146	0	32	0	67	0.91
44580105--44580255	4	38.0	4	74	19	97	0	30	0	68	0.94
44580113--44580237	33	3.7	33	76	17	123	0	31	0	68	0.96
44580073--44580252	38	4.6	40	81	12	196	0	31	0	68	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44580098--44580211	10	11.7	10	66	26	59	0	31	0	68	0.90
44580072--44580264	79	2.4	79	86	8	246	0	32	0	67	0.95
44580300--44580378	27	2.9	27	86	0	104	15	32	22	29	1.95
44580435--44580498	28	2.4	28	94	5	114	48	0	10	40	1.38
44581744--44581775	15	2.1	15	100	0	64	31	21	12	34	1.91
44583846--44584051	103	2.0	103	98	0	394	32	11	13	42	1.80
44589415--44589460	16	2.9	16	75	21	51	58	4	2	34	1.30
44595319--44595430	42	2.7	43	80	6	140	46	16	19	17	1.84
44595319--44595445	42	3.0	41	78	4	137	44	17	19	18	1.87
44601288--44601397	51	2.2	51	85	6	143	33	11	11	42	1.78
44611123--44611156	17	2.0	17	94	0	59	44	2	0	52	1.16
44611642--44611711	28	2.4	29	82	15	92	41	2	0	55	1.14
44613452--44613518	34	1.9	35	84	3	91	47	1	0	50	1.10
44618457--44618956	168	3.0	166	85	2	660	38	17	21	23	1.93
44622376--44622415	21	2.0	20	90	5	62	62	17	5	15	1.49
44624143--44624269	63	2.0	63	85	0	173	25	22	22	28	1.99
44627465--44627515	18	2.8	18	78	3	57	39	47	1	11	1.52
44627618--44627693	9	8.4	9	77	11	84	27	13	21	38	1.90
44627626--44627693	18	3.8	18	86	0	100	27	13	20	38	1.90
44627618--44627693	36	2.1	36	85	4	100	27	13	21	38	1.90
44639166--44639213	22	2.2	22	85	3	62	22	18	12	45	1.83
44642346--44642500	80	1.9	80	98	0	301	41	22	16	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44644946--44645013	18	3.9	17	73	21	61	10	14	1	73	1.16
44645103--44645132	9	3.3	9	95	0	51	6	0	3	90	0.56
44645135--44645175	17	2.5	16	84	7	55	4	17	0	78	0.93
44646147--44646194	23	2.0	23	88	4	69	72	0	8	18	1.08
44651405--44651488	21	3.9	22	84	9	120	16	20	25	38	1.93
44655847--44655912	30	2.2	30	88	2	96	39	9	31	19	1.83
44655856--44655915	30	2.0	30	100	0	120	33	10	30	26	1.89
44657564--44657595	16	2.1	16	94	5	57	59	0	0	40	0.97
44657556--44657608	24	2.1	26	86	10	74	56	0	0	43	0.99
44657566--44657623	24	2.4	22	78	16	53	55	0	1	43	1.10
44657567--44657625	28	2.1	27	81	12	66	54	0	1	44	1.10
44657840--44657887	22	2.2	22	82	14	55	70	8	20	0	1.12
44658552--44658600	12	4.1	12	83	0	53	36	2	6	55	1.37
44658554--44658600	18	2.6	18	90	6	69	36	2	4	57	1.30
44660049--44660114	25	2.6	25	77	18	64	30	21	25	22	1.99
44667291--44667347	25	2.3	25	78	6	71	33	22	22	21	1.97
44679009--44679044	17	2.1	18	89	5	56	50	25	0	25	1.50
44679235--44679428	42	4.6	42	81	8	207	29	25	15	28	1.96
44681658--44681717	24	2.5	24	81	10	70	53	5	5	36	1.45
44681658--44681726	24	2.9	22	79	12	66	49	5	5	39	1.51
44681812--44681853	9	4.8	9	82	14	52	59	2	7	30	1.37
44681869--44681928	24	2.5	24	78	10	61	55	5	5	35	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44681658--44682075	210	2.0	211	97	0	793	52	5	10	32	1.57
44682022--44682063	9	4.8	9	82	14	52	59	2	7	30	1.37
44681661--44682134	210	2.3	211	90	4	674	53	5	9	31	1.56
44683588--44683675	44	2.0	44	86	0	122	25	23	21	29	1.99
44683631--44683869	98	2.5	97	91	1	381	26	20	17	34	1.96
44683825--44683942	44	2.7	44	91	0	182	28	22	18	30	1.97
44685404--44685439	13	2.6	14	91	8	56	13	16	0	69	1.19
44685404--44685436	7	4.9	7	92	7	59	15	15	0	69	1.19
44685781--44685828	21	2.2	22	82	10	55	0	27	6	66	1.15
44685809--44685892	27	3.2	26	74	12	82	4	20	1	73	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210