genome.fa.s3.2.7.7.80.10.50.1000.180.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  180  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59946664--59946708	22	2.1	21	91	4	72	11	17	28	42	1.84
59946800--59946898	43	2.3	43	80	3	110	28	30	20	21	1.98
59946917--59946961	20	2.2	20	80	11	56	42	4	0	53	1.21
59952103--59952145	19	2.2	20	87	4	61	13	2	4	79	1.00
59952968--59953118	82	1.8	82	95	0	275	44	26	1	27	1.62
59953444--59953758	41	7.6	41	89	1	432	33	24	20	21	1.97
59953444--59953758	124	2.5	122	86	3	416	33	24	20	21	1.97
59953444--59953758	165	1.9	165	86	1	452	33	24	20	21	1.97
59953795--59953931	40	3.4	39	81	4	157	18	21	22	37	1.94
59956952--59957033	41	2.0	41	100	0	164	21	24	7	46	1.77
59962620--59962743	4	30.8	4	96	1	221	47	25	1	25	1.61
59968582--59968654	37	1.9	38	88	2	112	31	24	2	41	1.69
59968642--59968685	23	1.9	22	82	17	54	38	22	2	36	1.67
59968849--59969049	51	4.0	51	80	8	221	30	28	16	23	1.97
59968857--59969041	101	1.8	102	90	3	302	31	27	17	23	1.97
59969272--59969328	30	1.9	30	85	0	78	29	22	7	40	1.80
59975013--59975063	23	2.2	22	80	10	57	23	23	25	27	2.00
59975953--59975995	21	2.1	21	87	8	63	55	18	4	20	1.60
59977346--59977376	15	2.1	15	100	0	62	0	19	0	80	0.71
59994556--59994595	21	1.9	21	90	10	64	30	10	20	40	1.85
59997206--59997569	100	3.7	100	99	0	712	33	14	18	33	1.91
59998199--59998241	21	2.0	21	86	8	61	32	9	4	53	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60004370--60004411	18	2.2	20	83	8	52	54	7	0	38	1.28
60007879--60007919	12	3.4	12	90	6	57	4	19	0	75	0.98
60012074--60012175	41	2.5	40	88	4	150	27	20	24	27	1.99
60016323--60016420	41	2.4	41	89	5	146	25	23	10	40	1.86
60020327--60020365	16	2.4	16	83	12	53	61	2	33	2	1.23
60020428--60020472	19	2.4	19	92	0	72	24	0	4	71	1.05
60021440--60021590	40	3.8	39	84	2	185	38	19	18	23	1.93
60021650--60021843	41	4.7	41	83	7	225	22	19	29	28	1.98
60021650--60021843	82	2.4	82	86	5	259	22	19	29	28	1.98
60022264--60022320	21	2.7	21	75	20	64	21	1	33	43	1.63
60023021--60023054	15	2.3	15	90	10	52	44	2	0	52	1.16
60023670--60023728	26	2.3	26	88	5	86	11	30	30	27	1.92
60026235--60026342	43	2.5	43	83	4	121	23	17	29	29	1.97
60028297--60028348	14	3.6	14	75	14	52	3	21	1	73	1.10
60030347--60030410	27	2.3	27	86	2	83	37	14	0	48	1.44
60030546--60030633	4	22.0	4	76	21	55	71	0	28	0	0.86
60030547--60030639	10	8.7	10	73	13	53	72	0	27	0	0.85
60030550--60030691	32	4.3	32	75	19	116	70	0	28	0	0.92
60030545--60030639	27	3.6	26	80	12	97	70	0	29	0	0.87
60030554--60030680	29	4.6	28	78	18	108	70	0	29	0	0.93
60030555--60030653	27	3.6	27	76	15	96	71	0	28	0	0.86
60030583--60030656	22	3.1	22	76	9	58	72	0	27	0	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60030553--60030660	18	6.1	17	66	19	51	72	0	27	0	0.85
60030617--60030663	16	2.8	17	81	12	62	76	0	23	0	0.78
60030573--60030681	27	4.0	27	76	17	102	70	0	28	0	0.93
60030810--60030850	13	3.2	13	85	0	55	46	39	0	14	1.45
60030817--60030858	13	3.3	13	86	3	59	47	40	0	11	1.40
60031950--60032032	18	4.3	18	66	24	53	27	8	2	61	1.38
60034015--60034600	275	2.1	275	97	0	1104	50	8	11	30	1.67
60036753--60036779	11	2.5	11	100	0	54	37	7	14	40	1.74
60039030--60039074	18	2.5	18	85	0	63	17	46	6	28	1.73
60040358--60040424	29	2.5	27	88	9	93	52	1	10	35	1.45
60050668--60050789	45	2.7	46	82	6	151	43	7	3	45	1.48
60061224--60061253	11	2.6	11	94	5	51	36	3	0	60	1.14
60061596--60061680	30	2.8	30	89	5	127	60	1	2	36	1.18
60061729--60061775	20	2.3	20	75	7	51	44	2	10	42	1.51
60061839--60061893	19	3.2	17	82	14	60	49	12	0	38	1.41
60063030--60063070	20	2.1	20	86	4	57	34	4	0	60	1.18
60077168--60077214	20	2.4	20	75	10	53	36	0	2	61	1.08
60077255--60077338	28	3.2	26	80	12	84	34	0	5	59	1.22
60077255--60077313	28	2.2	28	87	6	86	35	0	5	59	1.20
60081073--60081108	18	2.0	18	88	0	54	19	13	13	52	1.74
60089392--60089565	88	2.0	88	89	0	267	27	18	26	27	1.98
60089413--60089557	45	3.3	44	71	3	130	26	15	28	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60089589--60089960	168	2.2	166	76	4	354	29	17	26	26	1.97
60090000--60090159	44	3.8	42	76	8	144	30	20	20	28	1.98
60092064--60092116	27	2.0	26	85	3	70	18	3	9	67	1.33
60092079--60092116	13	2.8	14	80	19	53	21	5	7	65	1.38
60092123--60092156	15	2.3	15	89	0	50	17	2	17	61	1.46
60094468--60094504	9	4.1	9	92	0	65	45	13	10	29	1.77
60102351--60102580	73	3.2	72	84	1	291	26	22	26	24	2.00
60102473--60102939	114	4.1	114	83	0	574	25	19	28	27	1.98
60103177--60103261	7	11.7	7	69	12	55	15	2	44	37	1.59
60103174--60103261	38	2.4	36	88	5	124	15	2	44	37	1.60
60103401--60103452	20	2.6	20	85	8	70	13	0	38	48	1.43
60103585--60103666	28	3.0	28	75	12	71	20	2	31	45	1.64
60103727--60103786	8	8.4	7	75	14	52	20	0	35	45	1.51
60103824--60103856	16	2.1	16	88	5	50	60	6	0	33	1.21
60105727--60106008	9	31.8	9	69	13	183	46	16	2	35	1.59
60105790--60106014	97	2.3	97	99	0	441	46	15	1	36	1.55
60106746--60106811	21	3.1	21	88	0	96	34	15	43	6	1.71
60106705--60107612	108	8.4	108	99	0	1807	39	16	31	12	1.86
60106854--60106919	21	3.1	21	88	0	96	34	15	43	6	1.71
60106962--60107027	21	3.1	21	88	0	96	34	15	43	6	1.71
60107070--60107135	21	3.1	21	88	0	96	34	15	43	6	1.71
60107178--60107243	21	3.1	21	88	0	96	34	15	43	6	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60107286--60107351	21	3.1	21	88	0	96	34	15	43	6	1.71
60107394--60107459	21	3.1	21	88	0	96	34	15	43	6	1.71
60107502--60107567	21	3.1	21	88	0	96	34	15	43	6	1.71
60107939--60108091	40	3.7	40	83	6	189	27	21	18	32	1.97
60112754--60112792	20	1.9	21	85	15	55	46	15	5	33	1.68
60113525--60113561	19	1.9	19	100	0	74	37	8	10	43	1.69
60113559--60113596	2	19.0	2	100	0	76	50	0	0	50	1.00
60115707--60115741	2	17.5	2	100	0	70	51	0	0	48	1.00
60116046--60116078	14	2.3	15	94	5	59	0	24	0	75	0.80
60124912--60124976	20	3.3	20	89	4	96	47	7	3	41	1.48
60124919--60124977	19	3.1	19	90	4	91	50	8	1	38	1.43
60124826--60125126	149	2.0	149	98	0	575	39	13	7	39	1.74
60125068--60125126	19	3.1	19	90	4	91	50	8	1	38	1.43
60125991--60126062	30	2.4	32	84	9	89	55	4	15	25	1.58
60127866--60127912	24	2.0	24	87	4	69	51	19	4	25	1.65
60129727--60129823	4	22.2	4	73	21	63	54	20	4	20	1.61
60129729--60129817	12	6.3	15	74	21	86	55	20	4	20	1.61
60129729--60129825	27	3.5	27	79	12	108	55	20	4	19	1.59
60129744--60129870	65	2.0	66	92	3	213	56	19	1	22	1.50
60129739--60129870	5	26.4	5	71	19	75	56	19	1	21	1.50
60129808--60129897	38	2.5	35	75	13	94	55	17	1	25	1.49
60129995--60130062	30	2.3	29	80	5	91	60	8	10	20	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60133824--60133849	5	5.2	5	100	0	52	23	19	19	38	1.93
60135250--60135279	15	2.0	15	100	0	60	33	6	26	33	1.83
60136488--60136656	76	2.2	77	93	5	299	52	10	7	30	1.61
60146110--60146147	19	2.1	18	90	5	58	57	7	0	34	1.28
60146072--60146141	30	2.3	30	80	4	79	57	10	0	32	1.32
60153049--60153099	19	2.7	19	81	6	59	52	0	0	47	1.00
60153115--60153141	8	3.4	8	100	0	54	62	0	0	37	0.95
60155765--60155825	29	2.1	29	81	0	68	36	19	19	24	1.95
60158656--60158696	15	2.7	15	88	7	57	73	4	0	21	1.02
60158655--60158696	18	2.3	18	91	0	66	71	4	0	23	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210