genome.fa.s3.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  101  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34467842--34468351	200	2.5	200	83	2	612	30	22	22	24	1.99
34467892--34468351	100	4.6	100	86	0	542	30	21	23	24	1.99
34468720--34468763	15	2.8	16	86	10	56	31	4	2	61	1.28
34475007--34475143	46	3.0	46	96	0	247	28	27	8	35	1.86
34476370--34476431	17	3.6	17	82	8	72	48	20	1	29	1.59
34477878--34478078	109	1.8	109	96	0	375	33	20	18	27	1.96
34480741--34480862	43	2.9	42	82	3	165	27	25	20	27	1.99
34480733--34480860	41	3.0	42	80	4	168	25	25	21	27	2.00
34480932--34480972	16	2.7	15	81	7	55	29	2	24	43	1.67
34492485--34492702	109	2.0	109	91	0	355	33	17	16	31	1.93
34492968--34493001	14	2.3	15	90	5	52	50	0	14	35	1.44
34498827--34498867	13	2.9	15	79	20	52	41	0	0	58	0.98
34498847--34498900	25	2.2	25	83	9	67	50	1	1	46	1.23
34501871--34502028	78	2.0	79	98	1	309	37	10	3	48	1.55
34502521--34502626	27	3.9	26	76	5	95	54	1	0	43	1.11
34502534--34502624	18	4.9	19	70	15	57	56	2	0	41	1.12
34503658--34503690	5	6.6	5	92	0	57	39	24	0	36	1.56
34506026--34506085	29	2.2	27	85	8	77	28	11	13	46	1.78
34506247--34506527	126	2.2	124	89	4	422	29	15	21	32	1.95
34510321--34510410	46	2.0	46	95	0	162	24	0	33	42	1.55
34510373--34510476	28	3.7	28	93	1	163	30	0	23	45	1.59
34512905--34512938	15	2.3	15	90	5	52	67	5	0	26	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34513083--34513120	18	2.1	19	85	14	53	60	0	13	26	1.33
34513131--34513172	22	1.9	22	90	0	66	33	0	33	33	1.58
34513177--34513245	22	3.1	22	91	0	111	40	0	27	31	1.57
34513454--34513512	29	2.2	26	84	9	73	44	15	13	27	1.84
34517048--34517135	43	2.0	43	93	0	149	42	10	9	38	1.71
34517757--34517834	41	1.9	40	84	7	104	39	0	5	55	1.22
34518003--34518081	32	2.5	32	82	0	104	31	16	21	30	1.95
34520188--34520278	41	2.2	41	84	3	112	24	15	25	35	1.94
34520242--34520496	127	2.0	128	99	0	503	26	10	18	44	1.82
34520664--34520708	22	2.0	22	95	0	81	62	8	6	22	1.48
34527837--34527888	24	2.2	24	82	0	59	34	3	7	53	1.48
34529723--34529775	24	2.2	24	82	0	61	33	5	9	50	1.58
34531377--34531545	3	56.3	3	72	9	94	57	1	8	32	1.37
34531393--34531577	92	2.0	93	98	1	363	56	2	9	31	1.44
34533004--34533093	44	2.0	44	82	0	108	24	20	21	34	1.96
34533425--34533996	50	11.5	50	66	8	270	23	18	24	33	1.96
34533418--34534058	99	6.4	99	81	4	668	23	18	24	33	1.97
34533487--34534048	199	2.8	199	88	2	806	22	19	24	33	1.97
34550004--34550208	101	2.0	102	98	1	394	38	6	8	46	1.61
34550160--34550217	20	2.9	19	85	7	64	46	10	1	41	1.48
34553101--34553142	21	2.0	20	86	4	57	23	16	33	26	1.96
34555699--34555767	32	2.2	32	94	0	120	33	20	7	39	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34556007--34556078	33	2.1	34	82	7	94	26	23	25	25	2.00
34556005--34556137	28	4.5	28	81	12	151	27	22	24	24	2.00
34556505--34557277	27	28.9	27	81	7	677	18	17	22	41	1.90
34559118--34559160	17	2.5	17	88	0	59	32	16	4	46	1.67
34565326--34565394	6	11.0	6	72	14	50	18	4	2	73	1.12
34565317--34565366	20	2.4	21	83	6	66	22	2	6	70	1.20
34575240--34575285	25	1.9	24	86	8	67	28	17	32	21	1.96
34575325--34575409	25	3.3	25	68	9	71	32	22	21	23	1.98
34582548--34582621	16	4.4	16	72	21	55	75	6	14	2	1.12
34582546--34582621	24	3.1	24	75	9	64	76	6	14	2	1.10
34582551--34582621	18	4.2	17	77	12	67	76	7	14	2	1.11
34591759--34591916	33	4.7	34	69	12	112	28	25	15	31	1.95
34591728--34591951	101	2.2	101	86	0	313	28	25	15	29	1.96
34595913--34595951	20	2.0	20	89	0	60	48	2	25	23	1.63
34595913--34595943	10	3.1	10	100	0	62	48	0	29	22	1.51
34596173--34596217	22	2.0	23	83	8	58	46	4	6	42	1.50
34601082--34602027	44	20.9	44	76	10	701	31	18	20	29	1.96
34601082--34602027	138	7.0	136	77	10	586	31	18	20	29	1.96
34602622--34602659	18	2.1	18	95	0	67	68	2	23	5	1.23
34606430--34606520	46	2.0	46	86	6	130	52	21	9	15	1.71
34608820--34608891	27	2.8	27	81	6	69	37	20	22	19	1.94
34609386--34609414	10	2.7	11	94	5	51	37	20	0	41	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34615990--34616015	8	3.2	8	100	0	52	38	11	0	50	1.39
34616320--34616403	19	4.4	19	78	0	78	35	23	23	16	1.95
34631154--34631190	14	2.8	13	88	8	56	43	5	13	37	1.67
34631399--34631465	35	1.9	35	96	0	125	19	23	17	38	1.93
34632603--34632635	15	2.1	15	94	5	57	0	24	0	75	0.80
34632607--34632633	14	1.9	14	100	0	54	0	18	0	81	0.69
34632610--34632644	17	2.0	18	88	5	54	2	17	0	80	0.84
34633121--34633308	82	2.4	78	93	3	313	37	12	17	32	1.86
34634575--34634616	16	2.6	16	92	0	66	42	7	2	47	1.43
34634590--34634651	23	2.7	23	82	2	72	48	1	1	48	1.21
34635857--34635970	32	3.7	30	77	10	115	47	6	10	35	1.63
34646642--34646758	41	2.8	42	80	10	134	32	29	19	18	1.96
34646803--34646955	64	2.3	67	85	6	197	41	15	8	34	1.78
34646992--34647118	60	2.1	60	81	5	141	41	14	4	38	1.67
34655576--34655606	15	2.1	15	100	0	62	35	6	38	19	1.77
34658248--34658292	3	15.0	3	100	0	90	33	0	0	66	0.92
34659298--34660608	653	2.0	653	97	0	2489	33	9	19	37	1.85
34662148--34662478	27	12.3	27	81	3	355	42	18	18	20	1.90
34662144--34662459	107	2.9	107	84	3	402	42	18	18	20	1.90
34662144--34662459	134	2.3	136	85	3	408	42	18	18	20	1.90
34662809--34662911	28	3.7	28	85	2	136	21	18	25	34	1.96
34662809--34662930	28	4.4	28	81	6	113	22	21	24	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34662816--34662930	56	2.1	56	85	6	153	22	21	25	30	1.99
34668250--34668289	20	2.0	20	100	0	80	25	15	40	20	1.90
34668957--34669289	27	12.3	27	81	2	328	42	18	19	20	1.90
34671981--34672048	26	2.7	26	77	6	77	19	25	19	36	1.94
34672360--34672405	24	2.0	23	82	4	56	23	17	21	36	1.94
34672069--34672542	234	2.0	234	90	2	738	24	20	20	34	1.96
34673819--34673865	16	3.1	15	81	6	51	53	6	4	36	1.46
34675371--34675416	21	2.1	22	84	11	60	26	6	30	36	1.82
34676251--34676308	22	2.7	21	86	7	80	34	3	18	43	1.68
34676228--34676279	18	3.0	17	73	15	52	36	9	19	34	1.84
34691093--34691145	19	3.0	17	78	10	61	35	9	18	35	1.84
34691117--34691174	22	2.7	21	86	7	80	34	3	18	43	1.68
34697126--34697198	28	2.6	27	78	16	78	56	2	2	38	1.28
34698303--34698357	28	2.0	28	82	7	67	38	9	0	52	1.33
34698455--34698497	22	2.0	22	85	0	59	44	0	2	53	1.13
34699115--34699319	90	2.3	90	99	0	401	49	1	6	42	1.39
34700251--34700372	64	1.9	64	86	0	172	22	20	22	35	1.96
34702711--34702770	31	1.9	32	93	3	104	35	18	16	30	1.93
34702707--34702787	32	2.6	31	84	2	108	39	18	13	28	1.89
34704564--34704635	32	2.2	33	82	7	85	29	4	16	50	1.64
34704813--34704847	17	2.1	17	88	0	52	54	0	2	42	1.15
34705301--34705382	33	2.7	29	75	17	85	53	7	14	24	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34705313--34705379	33	2.0	33	88	0	98	53	8	11	25	1.66
34710366--34710487	64	1.9	64	86	0	172	22	20	22	35	1.96
34712826--34712885	31	1.9	32	93	3	104	35	18	16	30	1.93
34712822--34712902	32	2.6	31	84	2	108	39	18	13	28	1.89
34714679--34714750	32	2.2	33	82	7	85	29	4	16	50	1.64
34714928--34714962	17	2.0	18	88	5	54	54	0	2	42	1.15
34717519--34717693	49	3.5	49	80	9	183	34	28	12	25	1.91
34717551--34717693	52	2.8	53	83	10	190	32	29	13	24	1.93
34719389--34719649	45	5.8	45	87	4	357	34	24	13	27	1.92
34719867--34719940	30	2.5	30	97	0	139	37	20	6	35	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210