genome.fa.s3.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  145  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48118210--48118564	180	2.0	180	92	0	593	30	17	20	31	1.96
48125833--48125872	20	2.0	21	85	5	55	80	5	5	10	1.02
48130353--48130426	24	3.2	24	64	24	68	24	32	13	29	1.93
48130354--48130461	45	2.4	45	96	0	198	24	30	12	32	1.93
48130354--48130483	45	2.9	45	91	0	179	23	28	12	35	1.91
48132651--48132785	30	4.5	30	77	3	146	20	26	14	38	1.91
48132651--48132814	60	2.8	60	82	4	181	21	26	14	37	1.92
48132771--48132838	29	2.3	29	87	2	91	26	25	13	35	1.92
48139891--48139924	16	2.1	16	100	0	68	64	23	5	5	1.38
48140246--48140405	30	5.4	30	73	5	137	23	26	10	38	1.88
48140181--48140365	90	2.1	90	85	0	244	23	26	11	38	1.89
48140246--48140403	60	2.7	60	75	8	162	23	27	10	38	1.88
48140347--48140405	29	2.0	29	83	6	75	25	27	10	37	1.88
48140396--48140452	29	2.0	29	82	0	69	24	22	19	33	1.97
48141582--48141629	21	2.4	20	93	6	80	29	14	16	39	1.88
48142634--48142674	20	2.0	20	95	0	73	60	0	31	7	1.24
48145802--48145869	29	2.3	29	87	5	93	47	11	7	33	1.68
48154737--48154761	7	3.6	7	100	0	50	40	0	0	60	0.97
48155189--48155218	3	10.0	3	100	0	60	33	33	0	33	1.58
48162194--48162224	9	3.4	9	90	0	53	25	12	22	38	1.90
48162278--48162314	9	4.1	9	92	0	65	45	13	10	29	1.77
48164424--48164475	24	2.2	24	82	6	61	40	9	36	13	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48164432--48164486	24	2.3	24	84	6	76	43	7	34	14	1.73
48165057--48165609	279	2.0	280	81	1	660	28	22	18	31	1.97
48165939--48165989	26	2.0	26	96	0	93	19	13	23	43	1.87
48168689--48168863	95	1.8	95	85	0	242	29	26	20	23	1.98
48168952--48169223	102	2.6	102	84	2	348	29	18	17	33	1.94
48175791--48175825	2	17.5	2	100	0	70	51	0	0	48	1.00
48183395--48183442	15	3.1	15	81	3	51	72	2	0	25	0.95
48190196--48190247	24	2.1	25	82	3	61	40	19	26	13	1.88
48190589--48190630	21	2.0	21	85	0	57	38	23	0	38	1.55
48190600--48190630	10	2.9	11	90	9	55	35	29	0	35	1.58
48190751--48190822	33	2.2	34	95	5	130	18	23	20	37	1.94
48198035--48198075	3	13.7	3	100	0	82	31	0	0	68	0.90
48204349--48204404	25	2.2	26	93	3	96	25	28	23	23	1.99
48206011--48206196	46	4.0	46	96	0	336	28	26	8	36	1.86
48214310--48214355	24	1.9	24	95	0	83	23	6	15	54	1.64
48214317--48214372	24	2.4	24	84	3	69	25	7	19	48	1.74
48221753--48221825	37	2.0	37	94	2	130	19	6	8	65	1.42
48235616--48235688	37	2.0	37	89	2	112	20	10	6	61	1.51
48240460--48240496	5	7.4	5	100	0	74	40	40	18	0	1.51
48241296--48241320	6	4.2	6	100	0	50	48	0	0	52	1.00
48255381--48255640	130	2.0	130	100	0	520	23	32	22	22	1.98
48256274--48256369	51	1.9	50	84	4	122	47	2	22	27	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48256333--48256376	12	3.8	12	76	11	56	45	0	27	27	1.54
48259850--48259986	26	5.3	26	75	3	132	25	13	26	35	1.92
48261995--48262047	19	2.8	19	75	11	56	69	1	0	28	0.99
48261995--48262055	24	2.6	24	78	17	65	68	1	0	29	0.99
48267507--48267699	50	3.8	50	84	0	251	25	23	30	20	1.99
48269792--48270001	26	8.1	26	84	0	240	27	11	27	34	1.91
48276479--48276545	27	2.5	27	87	0	98	22	19	26	31	1.98
48276553--48276604	27	2.0	26	85	7	70	40	15	25	19	1.90
48278100--48278443	51	6.8	51	77	8	278	29	25	15	28	1.96
48278102--48278443	102	3.4	102	82	4	392	30	26	15	28	1.96
48278100--48278442	153	2.3	148	77	6	341	30	25	15	28	1.96
48278725--48278788	30	2.1	30	82	5	76	32	21	4	40	1.74
48285491--48285827	51	6.7	49	75	8	243	28	26	15	29	1.96
48285486--48285827	102	3.4	102	81	4	365	28	26	15	28	1.96
48285921--48285953	17	2.1	17	88	11	52	63	6	0	30	1.18
48292919--48293004	39	2.2	39	79	6	95	25	25	26	22	2.00
48297143--48297190	25	1.9	25	86	0	69	31	14	10	43	1.79
48309738--48309795	30	1.9	30	86	6	82	29	25	3	41	1.72
48311511--48311695	95	1.9	95	94	0	325	30	9	22	37	1.86
48312766--48312818	26	2.0	26	100	0	106	54	15	11	18	1.70
48312980--48313004	5	5.0	5	100	0	50	40	0	0	60	0.97
48313026--48313975	474	2.0	475	99	0	1893	43	9	10	36	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48319524--48319634	43	2.6	43	79	13	138	22	22	27	27	1.99
48320736--48320775	22	2.0	20	85	14	55	25	2	17	55	1.55
48321157--48321181	2	12.5	2	100	0	50	52	0	0	48	1.00
48326468--48326526	23	2.5	23	76	15	57	18	25	18	37	1.94
48326516--48326567	25	2.1	25	89	7	79	21	21	21	36	1.95
48326464--48326618	73	2.1	73	83	4	197	19	23	21	34	1.96
48327645--48327725	42	1.9	42	85	9	112	23	27	29	19	1.98
48329416--48329467	9	5.8	9	77	8	52	28	7	3	59	1.43
48329413--48329455	15	2.9	15	82	0	50	32	6	0	60	1.23
48329416--48329477	27	2.3	27	83	5	72	32	6	4	56	1.46
48332253--48332299	22	2.1	22	88	7	69	36	4	21	38	1.73
48338863--48338896	16	2.1	16	88	0	50	20	14	20	44	1.87
48345016--48345040	6	4.2	6	100	0	50	36	32	16	16	1.90
48348796--48348898	45	2.3	45	79	3	118	27	17	28	27	1.98
48356812--48356862	21	2.4	21	93	0	84	1	45	17	35	1.60
48356747--48356906	87	1.8	87	87	0	230	12	30	16	40	1.86
48358567--48358626	17	3.5	17	75	8	59	36	1	16	45	1.58
48358570--48358653	34	2.3	36	86	8	109	34	1	16	47	1.55
48358570--48358626	9	6.8	8	76	7	51	33	1	17	47	1.58
48358600--48358655	17	3.1	17	74	18	58	37	0	14	48	1.44
48362099--48362391	9	34.4	9	73	16	234	31	1	21	45	1.59
48362099--48362391	16	17.2	17	74	13	209	31	1	21	45	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48362092--48362391	25	11.8	25	81	9	251	31	1	21	46	1.58
48362116--48362351	41	5.5	41	76	13	176	30	0	21	46	1.57
48364759--48364783	13	1.9	13	100	0	50	24	12	24	40	1.88
48365641--48365683	7	6.1	7	84	10	52	37	34	0	27	1.57
48365642--48365683	15	2.9	15	82	10	61	35	35	0	28	1.58
48365954--48366040	38	2.2	40	80	8	99	50	24	0	25	1.49
48366125--48366192	34	2.0	34	97	0	127	20	13	20	45	1.84
48366180--48366420	115	2.1	112	79	9	245	27	22	17	31	1.97
48388357--48388416	25	2.4	25	88	0	84	20	40	30	10	1.85
48392148--48392216	32	2.2	32	97	0	129	39	27	8	24	1.85
48392202--48392233	14	2.3	14	100	0	64	40	37	0	21	1.54
48396099--48396365	10	28.4	9	65	21	77	34	3	2	59	1.29
48396083--48396141	20	2.9	20	80	10	66	30	3	3	62	1.28
48396240--48396285	18	2.6	18	80	13	58	36	0	2	60	1.09
48396223--48396289	27	2.4	27	87	7	91	32	1	4	61	1.25
48396216--48396285	35	2.0	35	83	8	88	35	1	2	60	1.21
48398171--48398210	14	2.9	14	84	0	53	32	7	17	42	1.77
48398194--48398233	20	2.0	20	90	0	62	27	10	12	50	1.72
48398179--48398245	34	1.9	35	90	3	109	31	8	13	46	1.74
48398405--48398432	13	2.2	13	100	0	56	32	0	14	53	1.41
48399825--48399852	12	2.3	12	100	0	56	46	17	7	28	1.75
48407547--48407615	16	4.2	16	96	3	129	24	0	37	37	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48407547--48407615	33	2.1	32	97	2	129	24	0	37	37	1.56
48407851--48407885	18	2.0	17	88	5	52	54	0	0	45	0.99
48409365--48410131	121	6.3	121	99	0	1498	34	11	6	47	1.66
48417539--48417627	40	2.2	40	95	0	160	38	5	33	22	1.78
48430693--48430784	25	3.6	25	79	2	85	26	21	28	23	1.99
48432243--48432393	54	2.8	54	79	4	144	23	23	34	19	1.96
48450312--48450556	27	9.1	27	78	8	241	41	20	17	20	1.90
48450314--48450543	54	4.3	54	81	3	275	43	20	17	19	1.89
48450314--48450554	81	3.0	81	85	3	308	41	20	17	19	1.90
48452687--48452754	33	2.1	33	97	0	127	51	17	8	22	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210