Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  175  of  210  ( 25174 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58252246--58252411
41
4.0
41
76
6
156
28
25
22
22
1.99
58252584--58252632
6
7.8
6
81
4
53
32
53
2
12
1.50
58252788--58252820
14
2.3
15
94
5
59
36
33
0
30
1.58
58253235--58253390
41
3.8
41
84
5
172
27
30
21
20
1.98
58253235--58253390
82
1.9
82
85
2
215
27
30
21
20
1.98
58253429--58253522
40
2.3
42
85
9
131
19
20
25
35
1.96
58255301--58255327
12
2.2
12
100
0
54
29
37
0
33
1.58
58257947--58258034
27
3.3
26
79
6
95
23
14
26
35
1.94
58257947--58258060
54
2.1
54
81
0
129
25
13
26
35
1.92
58257967--58258060
27
3.5
26
81
5
98
24
13
27
34
1.93
58259295--58259340
22
2.1
22
100
0
92
32
17
8
41
1.80
58259875--58260216
50
6.8
50
79
7
302
23
27
21
28
1.99
58263236--58263311
21
3.7
21
91
3
120
39
10
13
36
1.79
58263236--58263334
21
4.6
24
77
16
78
38
9
14
38
1.77
58263303--58263345
22
1.9
23
85
4
61
34
4
13
46
1.65
58263506--58263544
19
2.0
21
85
10
55
15
10
5
69
1.34
58270638--58270675
8
4.5
8
93
6
58
81
0
0
18
0.69
58270814--58271728
88
10.4
88
89
1
1352
26
28
24
20
1.99
58271215--58271709
44
11.3
44
61
10
143
25
28
25
20
1.99
58271742--58271990
44
5.7
44
83
4
297
26
19
26
28
1.99
58272298--58272413
44
2.7
43
80
6
126
31
20
21
26
1.98
58272829--58272912
19
4.4
18
82
8
80
38
8
17
35
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58272831--58272905
19
3.8
19
91
6
123
37
9
16
37
1.80
58272832--58272894
21
3.1
21
95
4
112
38
9
14
38
1.78
58272844--58272928
21
4.0
22
79
14
81
37
7
16
38
1.76
58272894--58272938
23
2.0
23
86
4
65
33
4
15
46
1.66
58275734--58275792
30
1.9
31
86
3
84
30
23
0
45
1.53
58276529--58276693
80
2.0
81
98
1
323
23
13
10
52
1.72
58278884--58278918
12
2.9
12
82
0
52
17
22
0
60
1.37
58278884--58278918
18
1.9
18
94
0
61
17
22
0
60
1.37
58281857--58281993
33
4.2
33
83
2
163
17
31
10
40
1.84
58281914--58281993
15
5.1
15
72
8
70
20
30
10
40
1.85
58286265--58286324
10
6.6
9
77
22
63
68
1
1
28
1.09
58286263--58286398
9
14.4
9
69
21
68
63
2
1
31
1.18
58286263--58286375
19
5.9
19
77
11
79
63
2
1
31
1.18
58286319--58286398
29
2.8
29
83
5
83
62
3
1
32
1.21
58286351--58286422
19
4.2
18
74
24
66
63
1
0
34
1.03
58287146--58287188
8
4.9
9
85
8
54
25
0
2
72
0.97
58287163--58287215
18
2.9
18
82
0
61
30
7
7
54
1.56
58287173--58287221
18
2.7
18
78
6
55
28
10
8
53
1.63
58287772--58287809
2
19.0
2
100
0
76
0
50
0
50
1.00
58288634--58288670
9
4.1
9
85
0
56
43
13
10
32
1.79
58291270--58291296
13
2.1
13
100
0
54
22
14
14
48
1.81
58292187--58292229
18
2.4
18
84
7
61
23
4
9
62
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58317306--58317426
60
2.0
60
95
0
215
31
13
19
36
1.90
58331247--58331489
52
4.7
52
98
0
459
25
17
22
34
1.96
58337432--58337502
27
2.6
27
91
8
110
7
15
40
36
1.74
58338971--58339046
39
1.9
39
91
0
125
22
23
31
22
1.98
58338928--58339096
89
1.8
93
83
7
229
27
20
27
24
1.99
58339023--58339143
49
2.4
50
83
4
156
30
20
25
23
1.98
58352967--58353252
52
5.5
52
84
2
346
26
10
20
41
1.85
58352979--58353252
104
2.7
104
87
2
383
27
10
19
42
1.84
58366278--58366495
52
4.2
52
82
2
276
27
11
21
39
1.88
58392832--58392918
28
3.1
28
86
0
111
21
22
25
29
1.99
58392832--58392938
56
1.9
56
83
7
137
21
24
26
28
1.99
58392829--58392950
56
2.2
56
79
8
133
21
21
25
31
1.98
58393621--58393654
17
2.0
17
100
0
68
58
11
0
29
1.33
58393715--58393904
40
4.8
40
86
0
236
20
30
14
35
1.92
58393731--58393836
20
5.3
19
68
20
74
16
33
15
34
1.90
58396117--58396143
13
2.1
13
100
0
54
29
0
7
62
1.22
58396243--58396428
50
3.7
50
89
0
273
25
23
30
20
1.99
58399431--58399485
21
2.6
22
80
11
62
9
23
1
65
1.31
58405069--58405203
51
2.6
51
81
2
155
25
17
24
32
1.97
58410005--58410038
17
2.0
17
100
0
68
47
0
5
47
1.26
58414884--58414947
33
1.9
34
90
3
103
7
28
6
57
1.51
58414948--58414985
12
3.3
11
89
10
58
2
21
0
76
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58414948--58414996
24
2.1
24
85
11
66
4
22
0
73
1.00
58414965--58415011
23
2.1
22
84
11
60
4
25
0
70
1.05
58416642--58416772
40
3.3
40
86
0
181
32
22
19
25
1.98
58416807--58416915
39
2.7
39
77
5
121
25
22
23
27
2.00
58416663--58417076
143
2.8
145
82
6
451
31
20
20
26
1.98
58416961--58417068
40
2.7
40
84
2
137
28
21
23
26
1.99
58416797--58417076
154
1.8
154
85
3
402
30
20
22
27
1.98
58417528--58417559
15
2.1
15
94
0
55
21
0
43
34
1.53
58418156--58418229
37
2.0
37
94
0
130
35
8
16
40
1.78
58421772--58421834
21
2.8
24
76
16
71
39
6
3
50
1.44
58421770--58421852
44
1.9
44
87
4
125
38
7
3
50
1.47
58427624--58427747
43
2.9
43
86
2
151
27
20
22
29
1.98
58427561--58427729
86
2.0
86
81
4
198
27
15
25
31
1.96
58431777--58431815
20
2.0
19
85
5
51
17
5
25
51
1.66
58433962--58434146
50
3.8
49
79
10
191
29
25
17
26
1.98
58434302--58434333
16
2.0
16
93
0
55
40
12
6
40
1.68
58438807--58438883
21
3.7
21
76
0
73
12
29
33
23
1.92
58440157--58440211
27
2.0
27
96
0
101
43
0
14
41
1.45
58442341--58442424
16
5.2
16
73
15
75
15
25
2
57
1.51
58442341--58442424
32
2.6
32
82
0
105
15
25
2
57
1.51
58443944--58444511
152
3.7
151
94
1
906
30
9
7
52
1.61
58444635--58444672
16
2.4
16
86
8
51
65
2
7
23
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58445006--58445279
125
2.2
125
92
1
462
28
16
23
31
1.96
58450228--58450471
43
5.7
43
81
1
283
22
26
21
30
1.99
58450228--58450471
129
1.9
129
84
3
330
22
26
21
30
1.99
58450264--58450533
86
3.1
86
80
5
244
24
24
20
29
1.99
58452322--58452596
136
2.0
136
96
0
505
25
18
17
37
1.93
58456633--58456711
25
3.2
25
85
0
95
32
2
16
48
1.60
58456632--58456736
41
2.5
40
84
6
122
33
2
16
47
1.61
58456632--58456970
66
5.3
65
77
13
290
30
3
18
47
1.66
58456693--58456976
25
10.8
25
69
15
99
29
3
18
47
1.66
58456684--58456837
83
1.9
83
94
0
272
30
5
16
48
1.68
58456725--58456945
41
5.4
41
74
10
166
29
4
18
48
1.66
58457045--58457116
37
1.9
37
97
0
135
33
0
18
48
1.48
58457922--58457955
16
2.1
16
89
10
52
52
0
0
47
1.00
58458598--58458628
9
3.4
9
90
0
53
25
12
22
38
1.90
58458679--58458733
9
6.1
9
93
0
83
47
14
9
29
1.75
58459811--58459848
15
2.5
15
86
0
58
55
0
2
42
1.14
58461764--58461816
22
2.2
25
81
18
69
35
3
9
50
1.53
58470842--58470909
13
4.8
13
70
26
50
14
17
0
67
1.23
58470829--58470894
30
2.2
30
86
0
87
18
18
0
63
1.31
58470915--58470973
18
3.3
18
82
0
73
5
16
6
71
1.26
58470885--58470978
6
15.5
6
67
5
55
5
19
4
71
1.22
58472059--58472091
9
3.8
9
96
4
59
9
0
6
84
0.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58473724--58473788
20
3.3
19
73
16
51
38
16
21
23
1.93
58475822--58475860
20
2.0
20
85
10
53
25
2
5
66
1.25
58478923--58479233
43
7.4
43
81
7
359
29
30
20
19
1.97
58479082--58479232
80
1.9
79
84
1
203
28
33
19
19
1.96
58480735--58480771
9
4.1
9
92
0
65
45
13
10
29
1.77
58482510--58482535
9
2.9
9
100
0
52
23
30
11
34
1.90
58482674--58482703
4
7.5
4
100
0
60
26
0
73
0
0.84
58484610--58485044
165
2.7
162
87
6
626
30
13
11
45
1.78
58485465--58485545
21
3.8
21
73
11
67
39
33
0
27
1.57
58485496--58485522
14
1.9
14
100
0
54
37
37
0
25
1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210