genome.fa.s3.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  36  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12809945--12809987	18	2.4	17	82	17	52	34	0	2	62	1.08
12816404--12816618	86	2.5	86	100	0	430	21	22	9	46	1.81
12820227--12820826	301	2.0	301	97	0	1137	37	19	15	28	1.92
12824346--12824412	26	2.6	26	83	6	75	2	14	0	82	0.79
12824366--12824415	12	4.0	12	90	10	82	0	12	0	88	0.53
12824346--12824415	8	8.8	8	83	9	81	2	14	0	82	0.77
12825964--12826023	32	1.9	32	90	10	97	41	3	3	51	1.35
12827060--12827138	27	2.8	30	77	9	85	54	7	8	29	1.59
12828070--12828737	110	6.1	109	87	5	959	39	14	14	31	1.86
12828656--12828825	92	1.9	89	86	8	247	41	15	12	31	1.84
12828787--12829081	104	2.9	101	82	7	339	42	15	15	26	1.86
12833595--12833661	29	2.3	29	77	10	75	58	8	2	29	1.44
12833806--12834000	98	2.0	99	92	1	329	27	15	13	43	1.84
12834171--12834371	96	2.1	98	91	3	329	30	14	15	39	1.88
12833769--12834373	203	3.0	203	83	10	663	30	15	14	40	1.87
12834366--12834396	16	1.9	16	100	0	62	0	9	6	83	0.79
12835213--12835253	21	1.9	22	90	5	66	43	21	4	29	1.73
12836924--12836986	21	3.0	21	75	9	74	42	17	20	19	1.89
12836918--12837038	42	2.9	42	82	1	145	42	16	19	21	1.89
12836924--12837030	21	5.1	22	69	13	73	42	15	19	21	1.88
12861176--12861218	19	2.2	20	84	12	63	32	18	0	48	1.48
12861379--12861422	6	7.2	6	79	5	52	47	15	18	18	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12861379--12861427	18	2.6	19	77	6	55	46	16	16	20	1.83
12861402--12861596	45	4.3	45	88	0	291	42	18	18	20	1.90
12885907--12885946	17	2.4	17	86	0	53	40	20	7	32	1.80
12894991--12895022	16	1.9	17	93	6	57	31	18	0	50	1.48
12895490--12895539	3	17.3	3	79	8	59	66	4	0	30	1.10
12895490--12895536	18	2.7	18	87	6	71	65	4	0	29	1.11
12896388--12896444	25	2.3	25	78	6	62	63	15	7	14	1.51
12911508--12911546	19	2.0	19	85	5	51	41	2	2	53	1.28
12916573--12916627	27	2.0	27	100	0	110	34	14	14	36	1.87
12917341--12917493	76	2.0	75	84	3	200	28	33	13	25	1.93
12927248--12927295	25	2.0	24	87	4	69	35	22	27	14	1.93
12930025--12930086	25	2.5	25	86	0	88	40	17	20	20	1.92
12930632--12930739	47	2.2	48	85	4	137	37	32	12	18	1.88
12930632--12930765	47	2.8	47	81	4	135	33	30	13	22	1.92
12931469--12931497	14	2.0	15	93	6	51	27	0	20	51	1.47
12944560--12944637	22	3.6	21	81	10	86	23	29	0	47	1.52
12944562--12944631	11	6.4	11	79	11	72	22	32	0	44	1.53
12944562--12944637	33	2.3	33	84	4	100	23	30	0	46	1.53
12946339--12946381	18	2.4	18	84	0	50	18	25	9	46	1.79
12946858--12947068	116	1.8	115	87	0	305	42	5	5	46	1.48
12950081--12950366	126	2.3	126	89	2	423	27	20	18	32	1.96
12951738--12951764	14	1.9	14	100	0	54	48	7	0	44	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12953751--12953776	12	2.2	12	100	0	52	7	42	7	42	1.62
12962154--12962413	127	2.0	128	94	1	459	27	12	16	43	1.84
12966471--12966558	40	2.2	40	84	9	110	37	18	7	36	1.80
12967279--12967304	11	2.4	11	100	0	52	0	42	7	50	1.31
12968599--12968663	29	2.2	31	77	5	71	33	16	13	35	1.89
12968596--12968764	92	1.8	92	82	2	214	31	13	13	41	1.83
12968596--12968787	92	2.1	92	79	1	206	32	12	13	41	1.82
12970608--12970654	20	2.3	21	78	10	62	29	2	2	65	1.15
12970668--12970708	19	2.1	20	90	4	66	36	4	4	53	1.44
12970672--12970731	18	3.2	19	77	13	63	31	3	3	61	1.28
12974839--12974958	61	2.0	61	86	6	172	46	10	12	30	1.74
12974843--12974949	30	3.5	30	70	18	78	49	11	10	28	1.71
12976128--12976156	2	14.5	2	100	0	58	48	0	0	51	1.00
12981656--12981834	92	1.9	92	86	0	250	32	13	12	41	1.82
12985739--12985775	19	2.0	19	89	5	58	32	5	0	62	1.18
12986408--12986467	20	3.0	20	79	11	70	68	0	1	30	0.99
12990321--12990415	47	2.0	47	95	0	172	24	15	13	46	1.82
12991441--12991520	42	1.9	42	86	0	115	18	27	10	43	1.82
12992713--12992756	23	1.9	23	85	0	61	47	6	2	43	1.42
12996462--12996524	30	2.1	31	96	3	119	47	12	9	30	1.73
13000063--13000088	7	3.7	7	100	0	52	88	0	0	11	0.52
13011439--13011639	100	2.0	99	90	2	314	33	11	16	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13016910--13016934	4	6.2	4	100	0	50	76	0	0	24	0.80
13019287--13019324	17	2.2	17	86	9	51	18	0	5	76	0.97
13027147--13027327	90	2.0	91	98	1	355	47	4	7	40	1.52
13027306--13027344	21	2.0	21	85	14	57	58	0	0	41	0.98
13028583--13030160	788	2.0	788	97	0	3012	33	20	10	36	1.86
13032953--13033094	46	3.1	46	85	1	196	38	9	23	29	1.86
13036788--13036827	18	2.2	19	86	4	55	47	7	12	32	1.69
13037141--13037188	24	2.0	25	91	4	80	14	18	25	41	1.88
13038964--13039009	18	2.6	17	80	6	56	65	6	0	28	1.17
13039151--13039192	22	1.9	22	85	0	57	54	7	14	23	1.64
13039149--13039198	22	2.3	22	75	0	55	58	6	12	24	1.56
13044235--13044720	167	2.9	167	99	0	947	45	9	13	31	1.76
13053585--13053641	30	1.9	30	85	7	80	24	3	49	22	1.66
13057979--13058004	3	8.7	3	100	0	52	69	0	30	0	0.89
13061528--13061607	40	2.0	41	82	9	101	37	2	5	55	1.35
13061780--13061831	24	2.2	24	85	0	68	38	3	7	50	1.50
13062857--13062905	19	2.6	19	93	0	80	40	10	34	14	1.79
13070735--13070774	18	2.1	18	86	9	53	25	0	10	65	1.24
13072148--13072216	31	2.3	31	85	7	88	21	10	20	47	1.79
13073667--13073695	8	3.8	8	95	4	51	44	0	0	55	0.99
13076968--13077093	62	2.0	62	95	0	225	34	17	13	34	1.89
13079340--13079458	57	2.1	57	100	0	238	21	37	25	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13092016--13092071	21	2.7	21	74	0	58	28	5	33	32	1.80
13103343--13103396	21	2.6	22	77	13	53	9	66	0	24	1.20
13104020--13104125	40	2.7	40	86	1	133	26	4	61	7	1.43
13104065--13104182	56	2.1	57	85	3	159	24	5	62	7	1.42
13104020--13104222	96	2.1	97	97	2	385	25	4	61	7	1.44
13104120--13104226	40	2.7	40	85	1	142	25	4	62	7	1.41
13111805--13111925	60	2.0	60	100	0	242	29	18	24	27	1.98
13111961--13111994	15	2.2	16	94	5	61	38	17	26	17	1.92
13115393--13115447	3	18.3	3	100	0	110	67	0	0	32	0.91
13115689--13115749	17	3.4	17	70	12	59	50	14	3	31	1.59
13115680--13115755	37	2.1	37	94	0	134	46	14	5	34	1.67
13118818--13118879	21	3.0	21	90	0	88	12	45	4	37	1.64
13128416--13128440	8	3.1	8	100	0	50	48	0	12	40	1.40
13128790--13129242	18	23.8	18	69	21	98	45	11	12	30	1.77
13128956--13129015	19	3.0	20	88	9	95	43	10	8	38	1.68
13128808--13129245	154	2.9	150	90	5	645	45	11	12	30	1.76
13129099--13129130	16	2.0	16	100	0	64	43	6	6	43	1.54
13128788--13129330	17	28.7	18	71	18	261	46	11	11	30	1.75
13129250--13129330	33	2.4	34	83	6	101	51	13	8	25	1.69
13129744--13129802	20	3.0	20	77	18	61	57	5	3	33	1.37
13130000--13130046	19	2.6	18	83	6	58	2	8	12	76	1.09
13130005--13130046	19	2.2	19	91	0	66	2	7	11	78	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13129987--13130067	18	4.3	19	78	10	78	1	9	22	66	1.28
13130145--13130205	11	5.6	11	77	9	63	0	24	0	75	0.80
13130806--13130961	59	2.6	60	80	9	160	37	5	23	33	1.77
13130765--13130939	59	3.0	56	79	12	165	36	6	23	33	1.82
13130825--13130946	30	4.1	30	79	12	128	37	4	23	34	1.74
13130830--13130961	30	4.5	28	78	12	113	38	4	25	31	1.76
13131232--13131913	78	8.7	78	98	0	1303	36	23	14	26	1.93
13132192--13132254	1	63.0	1	74	0	54	0	4	7	87	0.67
13132204--13132253	8	5.9	8	86	9	64	0	2	10	88	0.61
13132193--13132251	17	3.3	18	83	11	77	0	5	8	86	0.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210