genome.fa.s3.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  153  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51388689--51388791	41	2.5	41	80	3	109	29	22	25	23	1.99
51396357--51396393	2	18.5	2	94	0	65	48	0	2	48	1.15
51402160--51402257	49	2.0	49	95	0	178	40	26	6	26	1.79
51403269--51403313	23	2.0	22	82	4	54	44	20	2	33	1.63
51408976--51409009	12	2.8	12	95	0	59	23	5	0	70	1.09
51409000--51409036	14	2.6	15	83	12	51	18	0	2	78	0.87
51409007--51409087	36	2.4	34	78	13	87	18	6	3	71	1.22
51415845--51415939	34	2.7	35	73	12	97	22	23	22	32	1.98
51415844--51415928	35	2.5	35	77	11	95	18	23	23	34	1.97
51415793--51416072	144	1.9	144	83	1	355	24	21	18	36	1.95
51417708--51417839	43	3.1	42	83	4	158	28	28	21	21	1.99
51417746--51417839	42	2.2	43	90	1	145	27	34	18	20	1.95
51419903--51421553	844	2.0	806	95	4	2933	31	17	13	34	1.88
51422918--51422967	25	2.0	25	96	0	91	26	0	8	66	1.19
51422936--51423407	105	4.4	105	84	6	637	25	11	12	50	1.73
51422943--51423406	217	2.2	211	91	4	741	26	11	12	50	1.73
51423508--51423537	15	2.0	15	100	0	60	33	0	0	66	0.92
51423690--51423727	15	2.8	14	88	11	53	26	0	2	71	1.00
51424034--51424136	15	7.1	14	77	14	68	35	39	0	24	1.56
51424062--51424115	7	7.4	7	77	8	54	35	44	0	20	1.52
51424077--51424118	8	5.5	8	77	11	52	35	47	0	16	1.47
51424747--51424883	73	1.9	73	90	3	222	23	24	24	28	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51424747--51424901	73	2.1	73	86	4	215	25	23	23	27	2.00
51424801--51425243	114	3.9	114	91	1	683	24	26	23	26	2.00
51425146--51425315	73	2.3	73	90	2	270	24	25	22	27	2.00
51429041--51429086	21	2.1	22	84	4	58	67	2	23	6	1.25
51431579--51431625	19	2.2	22	82	14	55	34	6	6	53	1.52
51442329--51442362	4	8.5	4	93	0	59	47	26	2	23	1.66
51452258--51452379	42	2.9	43	83	9	135	32	27	15	23	1.95
51452281--51452419	42	3.2	42	83	7	147	30	27	17	24	1.97
51452262--51452419	43	3.7	42	80	7	149	31	28	16	24	1.96
51456533--51456575	17	2.5	17	85	7	52	48	4	9	37	1.56
51457328--51457360	11	2.8	12	86	4	50	33	3	12	51	1.54
51458687--51458721	10	3.4	10	88	7	52	45	2	0	51	1.16
51458686--51458724	16	2.5	16	87	4	53	43	2	0	53	1.14
51458684--51458716	11	3.1	11	91	8	59	45	0	0	54	0.99
51458639--51458755	58	1.9	59	84	6	155	42	3	3	50	1.36
51471697--51471889	51	3.9	49	77	4	165	22	15	29	32	1.95
51471900--51471989	44	2.0	45	91	2	146	22	16	24	36	1.94
51476601--51476629	12	2.4	12	100	0	58	24	17	27	31	1.97
51477467--51477512	23	2.0	23	100	0	92	39	8	0	52	1.33
51477865--51477923	19	3.2	19	79	13	77	37	13	0	49	1.43
51484070--51484127	30	2.0	30	86	6	84	65	5	1	27	1.23
51493246--51493392	69	2.1	71	96	3	280	32	34	14	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51496035--51496084	20	2.5	19	80	9	55	36	4	6	54	1.44
51496038--51496087	19	2.6	19	84	12	66	38	4	6	52	1.45
51499514--51499564	21	2.4	21	100	0	102	54	0	29	15	1.41
51508534--51508906	44	8.0	44	68	19	204	33	19	21	26	1.97
51508467--51508969	142	3.5	142	92	0	819	33	18	21	26	1.96
51510647--51510689	20	2.2	20	87	4	61	34	4	6	53	1.49
51510651--51510697	19	2.4	19	83	13	60	36	4	6	53	1.46
51510770--51510807	14	2.4	16	83	16	53	28	7	2	60	1.38
51514156--51514214	26	2.2	27	84	3	75	42	16	11	28	1.84
51514274--51514398	66	2.0	64	88	6	191	46	20	5	28	1.73
51516055--51516169	41	2.8	41	75	10	126	20	23	24	32	1.98
51522603--51522993	195	2.0	195	98	1	766	32	20	10	36	1.87
51523901--51523930	12	2.4	13	94	5	53	0	40	0	60	0.97
51524628--51524689	26	2.4	27	86	8	92	38	24	17	19	1.93
51524635--51524712	26	3.0	26	85	7	79	38	20	17	23	1.93
51525022--51525098	28	2.8	28	85	0	100	23	23	23	29	1.99
51527616--51527657	20	2.1	20	100	0	84	21	33	9	35	1.86
51528282--51528337	10	5.3	10	80	16	60	64	7	0	28	1.20
51534974--51535035	26	2.4	27	86	8	92	38	24	17	19	1.93
51534981--51535058	26	3.0	26	85	7	79	38	20	17	23	1.93
51535368--51535444	28	2.8	28	85	0	100	23	23	23	29	1.99
51537962--51538003	20	2.1	20	100	0	84	21	33	9	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51538628--51538683	10	5.3	10	80	16	60	64	7	0	28	1.20
51545311--51545372	26	2.4	27	86	8	92	38	24	17	19	1.93
51545318--51545395	26	3.0	26	85	7	79	38	20	17	23	1.93
51545705--51545781	28	2.8	28	85	0	100	23	23	23	29	1.99
51548299--51548340	20	2.1	20	100	0	84	21	33	9	35	1.86
51548965--51549020	10	5.3	10	80	16	60	64	7	0	28	1.20
51560596--51560653	22	2.7	21	76	10	53	41	15	5	37	1.70
51560625--51560676	19	2.9	17	78	10	59	32	15	11	40	1.83
51565713--51565737	9	2.8	9	100	0	50	12	0	12	76	1.04
51570242--51570292	6	8.7	6	95	2	86	11	1	0	86	0.66
51571244--51571282	20	2.0	20	85	10	53	56	2	30	10	1.46
51573818--51573893	11	6.8	11	72	21	52	44	2	0	52	1.14
51573832--51573928	17	5.7	18	73	20	75	42	4	2	51	1.32
51573969--51574004	18	2.1	17	89	5	54	52	0	0	47	1.00
51583593--51583696	37	2.7	40	73	19	105	44	1	1	51	1.23
51583634--51583692	20	3.0	20	78	11	68	42	3	1	52	1.28
51587890--51587938	16	3.1	16	81	0	62	44	4	28	22	1.71
51594378--51594445	33	2.1	33	91	5	111	47	14	27	10	1.77
51597763--51597812	21	2.4	21	89	0	73	0	44	18	38	1.50
51600303--51600362	27	2.3	26	85	5	77	65	1	0	33	1.03
51604186--51604248	3	21.0	3	74	6	56	31	3	4	60	1.33
51604195--51604248	18	3.0	18	83	0	63	33	1	5	59	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51604832--51605037	107	1.9	109	90	3	328	29	10	10	50	1.70
51605081--51605294	106	2.0	106	90	3	333	28	11	12	48	1.74
51605329--51605521	107	1.8	105	90	2	314	26	11	11	50	1.73
51604732--51605625	248	3.6	249	85	6	1169	27	13	12	47	1.78
51611878--51612093	107	2.0	108	88	1	319	30	12	10	46	1.75
51611856--51612588	258	2.8	256	87	5	1041	28	13	11	46	1.79
51612393--51612588	106	1.8	106	91	0	320	25	10	12	51	1.72
51612504--51612779	81	3.4	82	72	22	285	27	10	13	49	1.74
51612506--51612824	160	2.0	159	93	1	550	27	10	12	49	1.73
51612876--51613091	106	2.0	107	87	5	314	26	12	11	49	1.74
51613126--51613337	104	2.0	106	85	1	284	27	12	13	46	1.79
51613382--51613596	106	2.0	107	84	4	283	28	13	10	47	1.76
51612782--51613724	258	3.7	254	87	5	1322	27	14	13	44	1.82
51613663--51613794	70	1.9	70	84	4	178	24	9	13	52	1.71
51613504--51613939	222	2.0	221	90	3	689	27	13	12	46	1.80
51613862--51614032	93	1.8	93	90	3	274	29	11	8	50	1.68
51614098--51614311	105	2.0	107	86	3	299	27	11	12	48	1.76
51613935--51614804	254	3.4	252	87	5	1222	28	13	12	46	1.78
51614352--51614565	106	2.0	105	84	5	279	28	10	12	48	1.74
51613725--51614804	512	2.2	491	86	5	1495	28	13	12	46	1.79
51614610--51614915	105	3.0	103	78	13	332	29	12	10	48	1.74
51614712--51614897	94	2.0	93	90	1	291	27	11	10	50	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51611962--51614692	989	2.8	959	85	6	2807	27	13	12	45	1.80
51614951--51615474	106	5.0	105	85	3	669	28	11	12	47	1.75
51614951--51615473	209	2.5	209	86	3	690	28	10	12	47	1.75
51614344--51616033	915	1.9	877	84	7	2218	28	12	12	47	1.76
51615526--51615660	68	2.0	69	86	4	193	31	11	9	48	1.71
51615594--51615808	107	2.0	107	91	1	351	29	12	11	46	1.75
51615843--51616026	95	2.0	93	86	2	260	26	9	11	52	1.69
51615697--51616168	238	2.0	237	91	2	777	27	12	12	48	1.76
51616120--51616217	49	2.0	49	90	4	153	20	5	11	63	1.46
51615259--51616420	536	2.1	547	85	9	1543	27	12	12	46	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210