genome.fa.s3.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  139  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46145176--46145650	232	2.1	232	89	2	731	29	20	23	26	1.99
46145319--46146497	89	12.8	89	69	13	544	29	20	22	27	1.98
46145321--46146309	44	21.4	44	65	11	224	29	20	23	27	1.99
46145033--46145793	375	2.0	374	84	4	998	30	20	22	26	1.98
46145408--46146075	143	4.7	143	87	2	907	29	19	22	27	1.98
46144890--46145936	518	2.0	518	87	2	1489	30	20	22	26	1.98
46144890--46146187	518	2.5	513	82	5	1377	29	20	22	26	1.98
46146034--46146283	45	5.6	45	68	10	163	30	20	24	25	1.99
46146292--46146529	44	5.3	44	73	12	139	30	21	18	30	1.97
46146375--46146497	46	2.7	46	84	3	160	30	19	20	29	1.97
46147982--46148049	24	2.7	25	80	11	77	26	4	4	64	1.31
46147992--46148049	26	2.3	24	88	5	80	25	3	5	65	1.29
46147974--46148079	26	4.1	26	72	14	78	29	5	4	60	1.40
46147992--46148093	52	2.0	50	80	3	114	29	3	4	61	1.35
46148083--46148130	21	2.3	19	77	19	51	39	2	4	54	1.32
46148123--46148185	25	2.7	23	74	13	65	22	0	6	71	1.08
46148240--46148273	17	2.0	17	94	0	59	35	5	2	55	1.39
46154250--46154765	40	12.3	43	79	12	413	21	20	23	33	1.97
46154252--46154768	168	3.1	169	85	7	725	21	20	23	34	1.97
46154275--46154764	124	3.9	126	88	6	671	21	20	23	33	1.97
46154252--46154768	84	6.2	84	85	7	653	21	20	23	34	1.97
46154986--46155092	44	2.4	46	75	13	114	23	23	23	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46155044--46155756	88	8.1	88	85	1	862	23	23	23	28	1.99
46155181--46155487	44	7.0	43	64	14	115	25	25	23	25	2.00
46156181--46156376	108	1.8	108	85	2	277	45	10	17	26	1.80
46156342--46156442	45	2.3	43	80	10	112	52	8	12	25	1.68
46156714--46156769	18	3.1	18	87	7	69	1	12	3	82	0.88
46156714--46156770	25	2.3	25	84	6	80	1	14	3	80	0.92
46158504--46158684	62	2.9	62	98	0	344	32	6	21	39	1.79
46172981--46173012	16	2.0	17	88	11	50	43	12	15	28	1.83
46180499--46180537	18	2.0	20	85	9	55	48	10	12	28	1.74
46192553--46192592	14	2.9	14	84	0	53	32	7	17	42	1.77
46202396--46202535	63	2.2	63	96	0	253	52	12	18	17	1.75
46209061--46210610	670	2.3	660	81	5	1760	38	12	12	35	1.82
46218625--46218758	58	2.2	60	82	11	152	44	2	5	48	1.37
46219160--46219197	12	3.3	12	82	14	53	76	13	0	10	1.02
46219200--46219243	12	3.4	12	79	14	52	50	36	4	9	1.55
46219338--46219450	4	27.8	4	70	15	54	23	8	0	67	1.24
46219338--46219386	25	2.0	25	84	8	64	22	12	0	65	1.26
46219388--46219419	15	2.1	15	94	0	55	28	0	0	71	0.86
46222645--46222683	11	3.5	11	82	0	51	15	10	15	58	1.62
46224726--46224768	20	2.1	21	82	4	52	51	16	11	20	1.75
46227253--46227439	40	4.6	40	76	10	164	33	28	14	22	1.94
46232720--46232854	40	3.3	40	80	5	155	31	26	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46233370--46233408	16	2.4	16	86	4	51	46	15	0	38	1.46
46239576--46239605	14	2.2	14	94	5	53	33	0	13	53	1.40
46246579--46246694	39	2.9	40	84	2	162	34	17	28	19	1.95
46256875--46257052	50	3.6	50	84	0	230	29	21	29	19	1.98
46258999--46259028	12	2.5	12	94	0	51	23	40	30	6	1.80
46260015--46260041	9	3.0	9	100	0	54	33	11	22	33	1.89
46266241--46266300	30	2.0	30	93	0	102	26	3	15	55	1.56
46274740--46274817	34	2.3	34	90	0	120	34	2	16	46	1.61
46274738--46274852	34	3.5	31	82	10	99	32	3	18	46	1.66
46275091--46275173	36	2.3	36	81	4	87	30	7	19	43	1.78
46275144--46275181	18	2.1	18	90	0	58	36	13	13	36	1.83
46275801--46275848	17	2.9	16	75	9	51	39	10	6	43	1.64
46291245--46291271	14	1.9	14	100	0	54	44	18	7	29	1.77
46307106--46307130	13	1.9	13	100	0	50	16	16	0	68	1.22
46316583--46316628	24	1.9	24	86	0	65	47	4	0	47	1.21
46316592--46316648	30	1.9	30	82	13	73	47	3	0	49	1.18
46316946--46316988	21	2.0	21	82	8	52	67	4	4	23	1.28
46327679--46327706	14	2.0	14	100	0	56	35	7	28	28	1.84
46340363--46340391	14	2.0	15	93	6	51	27	6	20	44	1.77
46349874--46349933	27	2.3	27	97	2	113	38	10	16	35	1.82
46351465--46351490	12	2.2	12	100	0	52	23	0	15	61	1.33
46357653--46357683	12	2.5	12	94	5	53	9	32	6	51	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46360114--46360234	25	4.8	25	71	10	86	36	19	23	21	1.95
46364524--46364566	20	2.2	20	87	4	61	51	13	16	18	1.77
46364599--46364643	20	2.2	20	88	0	63	66	4	11	17	1.38
46364666--46364710	20	2.2	20	84	7	56	35	4	4	55	1.40
46371151--46371385	124	1.9	124	94	0	416	32	17	10	40	1.83
46375791--46375873	40	2.1	40	100	0	166	21	19	8	50	1.73
46376884--46376914	12	2.5	12	94	5	53	64	32	0	3	1.09
46386146--46386210	7	9.1	7	72	14	53	40	44	0	15	1.46
46386146--46386195	22	2.3	22	89	3	75	38	46	0	16	1.47
46386147--46386292	14	10.2	14	73	9	80	44	32	0	22	1.58
46386399--46386428	14	2.1	14	93	0	51	63	16	0	20	1.31
46386427--46386488	21	2.9	22	81	9	67	38	43	0	17	1.49
46386588--46386909	40	8.2	40	71	10	225	27	22	19	30	1.98
46387904--46387965	29	2.1	29	87	0	88	27	14	8	50	1.71
46388183--46388387	36	5.8	35	82	6	234	25	20	15	38	1.92
46388182--46388387	73	2.9	71	84	3	270	25	21	15	37	1.92
46391788--46392088	112	2.7	112	77	6	257	31	20	22	24	1.98
46391922--46392173	113	2.2	112	77	8	251	30	21	23	25	1.99
46391983--46392648	208	3.2	207	91	0	1044	29	18	22	28	1.98
46396176--46396223	9	5.6	9	80	9	64	43	18	2	35	1.62
46396174--46396252	16	5.0	16	77	13	83	43	15	1	40	1.54
46396463--46396663	16	12.8	16	71	18	122	46	18	1	32	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46396463--46396663	9	24.3	9	71	18	152	46	18	1	32	1.61
46396532--46396663	25	5.3	25	87	0	192	46	19	2	31	1.63
46399275--46399516	43	5.7	42	90	2	331	27	19	26	27	1.99
46399275--46399474	85	2.3	86	93	0	339	28	19	27	25	1.99
46399275--46399516	85	2.8	85	88	1	315	27	19	26	27	1.99
46399275--46399516	128	1.9	128	86	1	342	27	19	26	27	1.99
46401111--46401195	21	4.1	21	86	1	100	27	20	21	31	1.97
46401111--46401195	42	2.0	41	86	2	116	27	20	21	31	1.97
46401348--46401424	34	2.3	34	84	4	93	42	16	9	31	1.80
46401701--46401733	17	1.9	17	88	11	50	54	3	6	36	1.41
46401795--46401906	51	2.2	51	95	1	199	64	5	24	6	1.38
46401843--46401879	19	1.9	19	88	0	56	67	2	18	10	1.32
46402587--46402633	24	2.0	24	84	16	62	34	0	14	51	1.43
46402853--46402929	40	1.9	40	86	0	109	27	18	23	31	1.97
46405344--46405708	185	2.0	185	98	0	703	41	4	12	41	1.64
46411260--46411311	24	2.2	24	89	0	77	55	9	1	32	1.43
46413554--46413591	19	2.1	19	85	14	53	44	0	0	55	0.99
46413554--46413591	18	2.1	18	85	14	51	44	0	0	55	0.99
46418259--46418427	62	2.7	62	96	0	302	49	9	6	34	1.61
46425394--46425424	14	2.2	14	100	0	62	61	19	6	12	1.53
46428553--46429273	183	3.9	183	97	0	1325	27	9	21	42	1.83
46433391--46433415	12	2.1	12	100	0	50	52	16	8	24	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46434100--46434218	59	2.0	60	98	1	231	34	15	25	25	1.94
46435557--46435715	82	1.9	82	93	0	273	29	6	19	44	1.77
46446857--46446887	16	1.9	16	93	0	53	51	0	0	48	1.00
46448534--46448578	24	1.9	24	86	4	65	20	2	24	53	1.57
46451116--46452389	486	2.6	485	89	1	1917	33	14	21	31	1.93
46455656--46456533	462	1.9	462	93	0	1495	32	15	20	31	1.94
46460096--46460134	18	2.2	18	85	0	51	56	0	2	41	1.13
46470284--46470562	78	3.6	78	79	9	306	30	12	12	44	1.79
46470268--46470606	151	2.2	154	77	11	358	28	12	12	46	1.78
46473760--46473972	31	6.9	31	83	1	248	31	9	15	43	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210