genome.fa.s3.2.7.7.80.10.50.1000.203.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  203  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67647815--67647869	9	6.1	9	74	16	51	32	1	1	63	1.15
67647861--67647907	22	2.2	22	88	3	69	38	2	4	55	1.31
67647811--67647922	49	2.3	48	80	8	113	37	1	2	58	1.23
67649076--67649144	30	2.3	30	85	5	86	27	34	18	18	1.95
67651659--67651727	30	2.3	30	85	5	86	27	34	18	18	1.95
67657860--67658011	30	5.1	30	80	6	148	30	22	3	42	1.72
67657880--67658011	59	2.2	59	83	5	167	31	21	3	43	1.70
67658313--67658353	21	2.1	19	86	13	57	78	7	14	0	0.96
67658495--67658549	3	18.3	3	96	0	101	65	0	32	1	1.03
67658835--67658896	6	10.5	6	73	26	53	80	1	16	1	0.87
67658831--67658896	21	3.1	21	78	8	73	80	1	16	1	0.87
67658820--67658896	27	2.8	28	82	11	79	79	1	18	1	0.88
67658819--67658896	15	5.0	15	75	14	61	78	1	19	1	0.90
67659047--67659104	28	2.1	28	90	6	91	39	3	0	56	1.16
67659359--67659456	37	2.8	34	82	15	119	35	11	9	43	1.72
67659362--67659456	34	2.7	33	83	15	111	36	10	9	43	1.72
67659364--67659459	19	5.4	18	67	18	67	39	10	9	40	1.72
67664528--67664649	43	2.8	43	81	7	158	26	29	18	25	1.98
67674402--67674460	30	2.0	30	93	0	100	47	15	15	22	1.82
67678013--67678097	25	3.4	25	85	3	82	29	21	25	23	1.99
67678002--67678097	50	1.9	50	81	8	115	30	19	26	23	1.98
67678028--67678232	25	8.4	24	71	5	99	36	20	24	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67678060--67678169	47	2.3	47	82	3	130	34	20	26	18	1.96
67678090--67678193	47	2.2	47	83	13	124	35	21	25	18	1.95
67685110--67685150	19	2.2	19	91	4	66	58	4	0	36	1.20
67686337--67686422	40	2.2	40	82	0	109	37	4	6	51	1.50
67689414--67689456	3	14.3	3	90	0	68	27	0	4	67	1.10
67689550--67689605	3	18.7	3	96	0	103	30	0	1	67	1.01
67689323--67689586	130	2.0	131	97	2	496	25	8	15	50	1.72
67700861--67700962	9	10.8	9	74	15	55	67	0	1	29	1.08
67700913--67700979	29	2.4	27	82	7	73	67	2	0	29	1.06
67700913--67700962	20	2.7	19	88	11	77	70	0	0	30	0.88
67700996--67701074	31	2.7	30	71	7	72	62	2	2	32	1.22
67701624--67701786	9	17.6	9	70	13	82	26	3	4	65	1.26
67701716--67701797	30	2.9	28	80	7	78	21	2	2	73	1.07
67705540--67705620	41	2.0	41	100	0	162	34	17	7	40	1.77
67710232--67710264	13	2.5	13	95	0	57	27	42	18	12	1.85
67721371--67721413	3	14.3	3	100	0	86	32	0	0	67	0.91
67733357--67733396	16	2.5	16	91	0	62	47	2	7	42	1.45
67733329--67733381	22	2.4	22	87	0	70	52	1	1	43	1.23
67734019--67734058	20	1.9	22	90	10	66	60	0	0	40	0.97
67745696--67745764	16	4.2	16	96	3	129	24	0	37	37	1.56
67745696--67745764	33	2.1	32	97	2	129	24	0	37	37	1.56
67745745--67745835	45	2.0	45	85	2	121	27	6	28	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67747161--67747692	7	76.0	7	100	0	1064	28	14	14	42	1.84
67749738--67749806	35	1.9	36	83	13	90	68	5	0	26	1.12
67749774--67749803	15	1.9	16	93	6	53	73	0	0	26	0.84
67749820--67749867	20	2.2	21	82	10	62	62	4	6	27	1.38
67751696--67751812	62	1.9	62	100	0	234	30	28	11	29	1.92
67752015--67752050	2	18.0	2	88	0	54	50	0	44	5	1.25
67752015--67752050	16	2.2	16	100	0	72	50	0	44	5	1.25
67754734--67754762	8	3.6	8	100	0	58	51	10	0	37	1.36
67754757--67754795	2	19.5	2	100	0	78	48	0	0	51	1.00
67757472--67757527	25	2.2	25	87	6	78	28	5	19	46	1.72
67760655--67760693	17	2.3	17	86	8	53	30	0	20	48	1.50
67760832--67760939	21	5.3	20	82	2	94	16	21	17	44	1.87
67760890--67760936	19	2.5	19	96	0	85	17	25	17	40	1.90
67762808--67762950	54	2.6	54	97	0	268	25	18	25	30	1.98
67763989--67764040	21	2.5	20	84	6	68	38	5	28	26	1.79
67766240--67766303	21	3.0	22	75	9	78	35	25	20	18	1.95
67768698--67768889	96	2.0	96	94	0	339	27	22	6	43	1.77
67769185--67769220	18	2.1	18	89	5	56	33	25	0	41	1.55
67773037--67773222	90	2.1	89	93	2	320	24	1	17	57	1.46
67773126--67773408	114	2.7	104	82	11	339	26	1	14	57	1.46
67773218--67773439	114	2.0	113	90	2	347	27	1	13	58	1.44
67773762--67773814	21	2.5	21	87	0	70	30	33	9	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67775174--67775226	21	2.5	21	87	0	70	30	33	9	26	1.88
67779539--67779689	54	2.9	54	71	16	143	57	9	1	31	1.40
67779539--67779698	51	3.1	51	72	13	137	58	10	1	30	1.40
67779983--67780031	24	2.0	25	92	4	82	67	0	0	32	0.91
67787670--67787710	20	2.2	20	86	8	59	58	2	2	36	1.24
67787679--67787736	29	2.0	28	83	6	71	62	3	3	31	1.29
67790588--67790793	69	3.1	63	79	13	168	33	15	5	44	1.70
67790686--67790862	69	2.6	68	87	4	241	36	15	4	43	1.68
67792393--67792428	18	1.9	18	88	5	54	55	25	0	19	1.43
67793989--67794137	69	2.2	69	85	2	192	36	18	5	38	1.74
67794134--67794177	21	2.0	22	91	4	72	45	9	0	45	1.35
67809915--67809958	18	2.4	18	81	7	54	59	0	2	38	1.10
67809960--67810034	21	3.8	20	77	21	68	58	1	2	37	1.20
67809915--67810143	10	23.4	9	69	17	104	58	3	2	35	1.27
67810732--67810813	19	4.2	19	71	17	51	32	2	4	59	1.31
67810839--67810918	31	2.6	31	75	9	83	42	1	2	53	1.22
67820654--67821145	243	2.0	243	94	0	867	33	18	23	24	1.97
67821568--67821760	75	2.6	75	100	0	386	32	8	24	34	1.86
67823858--67824215	177	2.0	177	98	0	689	31	24	19	24	1.98
67836883--67836951	28	2.5	28	83	4	86	33	26	14	26	1.94
67836883--67836965	28	3.0	28	81	0	76	33	22	15	27	1.95
67838360--67838384	12	2.1	12	100	0	50	84	0	0	16	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67843198--67843231	12	2.9	11	91	8	50	0	14	17	67	1.23
67849168--67849206	20	1.9	20	89	5	60	20	17	23	38	1.93
67849949--67849998	22	2.3	22	83	10	59	24	6	4	66	1.32
67853430--67853459	13	2.3	13	100	0	60	46	10	6	36	1.64
67857535--67857567	15	2.1	16	88	5	50	15	12	27	45	1.81
67865442--67865484	23	2.0	23	81	9	54	65	2	0	32	1.06
67865726--67865778	21	2.5	21	93	0	88	30	39	9	20	1.84
67868569--67868618	10	4.9	10	81	11	57	54	4	0	42	1.19
67868576--67868663	31	2.7	31	76	10	88	57	2	0	39	1.11
67868630--67868741	19	5.9	18	73	17	77	58	1	7	32	1.35
67869051--67869154	9	10.5	10	68	16	56	32	3	0	62	1.20
67882708--67882757	13	3.8	13	79	7	57	32	2	28	38	1.68
67884410--67884437	6	4.7	6	100	0	56	14	0	50	35	1.43
67886241--67886284	19	2.5	17	79	13	52	40	0	6	52	1.28
67886246--67886299	19	2.8	20	85	2	74	37	0	5	57	1.22
67886252--67886298	20	2.4	20	89	3	69	40	0	2	57	1.11
67887939--67887974	18	2.0	18	94	0	63	30	16	8	44	1.77
67892848--67892892	23	2.0	22	82	4	54	28	2	20	48	1.61
67893136--67893203	26	2.7	26	79	6	77	17	19	22	41	1.91
67893183--67893324	24	5.9	24	65	17	64	18	26	20	34	1.96
67893245--67893362	48	2.4	49	79	10	134	19	25	20	34	1.96
67893550--67893617	5	13.6	5	100	0	136	39	0	20	39	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67896810--67896855	21	2.0	24	84	12	62	39	8	4	47	1.54
67900089--67900494	27	14.2	28	72	11	153	22	17	5	54	1.63
67900163--67900346	96	1.9	95	83	3	235	22	16	5	55	1.61
67900258--67900542	29	10.2	28	74	7	175	23	16	5	54	1.62
67900258--67900449	57	3.4	56	76	9	153	23	16	4	55	1.60
67900356--67900495	53	2.6	55	80	5	160	23	14	6	55	1.62
67900258--67900495	27	8.6	28	76	6	180	23	15	5	55	1.61
67901413--67901464	26	2.0	26	85	7	70	32	21	19	26	1.97
67904666--67904763	50	1.9	51	83	6	128	40	15	5	38	1.69
67907055--67907100	21	2.2	21	88	0	65	36	21	39	2	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210