genome.fa.s3.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  76  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26547972--26548023	25	2.1	25	79	13	63	69	1	0	28	0.99
26547973--26548023	24	2.1	24	85	7	68	68	1	0	29	1.00
26554658--26554827	31	5.6	31	70	8	98	31	15	8	44	1.76
26554653--26554882	90	2.6	90	95	0	397	30	16	9	44	1.79
26559426--26559472	24	2.0	24	91	0	76	38	36	19	6	1.77
26562325--26562370	19	2.4	20	76	20	53	26	21	8	43	1.81
26580206--26580242	18	2.1	18	89	0	56	32	0	0	67	0.91
26580211--26580257	22	2.1	22	88	7	69	34	0	0	65	0.93
26586934--26586986	13	4.1	13	76	9	63	37	24	5	32	1.79
26587418--26587504	44	2.0	44	90	0	138	32	31	16	20	1.94
26593092--26593131	21	1.9	21	89	0	62	30	0	7	62	1.23
26593092--26593132	10	4.0	10	84	6	55	29	0	9	60	1.28
26595140--26595175	18	2.0	18	89	10	56	19	0	8	72	1.10
26599888--26599964	39	2.0	40	82	12	97	68	5	19	6	1.31
26599966--26600010	18	2.6	17	82	6	56	68	4	20	6	1.29
26603235--26603302	35	1.9	35	87	0	100	23	19	17	39	1.92
26614235--26614287	25	2.1	25	100	0	106	37	7	0	54	1.29
26614234--26614294	25	2.5	24	92	7	104	37	8	0	54	1.31
26617274--26617343	23	3.0	23	77	8	70	37	1	1	60	1.15
26617815--26617931	60	2.0	59	94	1	207	31	0	13	54	1.39
26618893--26618922	15	2.0	15	100	0	60	40	6	13	40	1.71
26627866--26627916	6	8.5	6	78	8	50	19	0	0	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26627871--26627916	14	3.1	14	84	15	58	19	0	0	80	0.71
26628375--26628410	3	11.7	3	88	5	54	0	30	0	69	0.89
26629847--26629888	21	2.0	20	86	4	57	33	11	2	52	1.51
26632579--26632611	16	2.0	17	88	5	50	39	9	12	39	1.74
26634947--26634977	16	1.9	16	93	0	53	35	9	9	45	1.70
26635202--26635393	102	1.9	101	86	3	278	24	17	26	31	1.97
26635194--26635394	51	4.0	52	81	7	243	24	16	27	30	1.97
26635612--26635643	16	2.0	16	93	0	55	59	0	15	25	1.36
26645962--26646029	34	2.0	34	91	5	111	23	22	19	35	1.96
26645969--26646047	34	2.3	34	81	14	92	24	24	21	30	1.99
26647525--26647604	38	2.0	40	92	4	137	31	38	1	28	1.65
26671854--26671886	7	4.6	7	96	3	57	27	3	0	69	1.03
26671870--26671986	21	5.7	21	72	16	77	18	6	2	71	1.20
26686819--26686850	12	2.5	13	95	5	57	18	3	18	59	1.51
26688937--26688971	18	1.9	18	100	0	70	22	17	31	28	1.96
26690896--26690983	42	2.1	42	91	0	140	22	23	15	37	1.93
26695904--26695956	18	2.9	19	82	17	69	41	0	3	54	1.18
26695908--26695976	18	3.7	17	81	13	66	40	1	4	53	1.30
26696452--26696476	12	2.1	12	100	0	50	44	8	8	40	1.63
26696637--26696692	26	2.2	25	81	6	67	53	0	1	44	1.11
26696649--26696805	61	2.6	61	79	11	171	52	3	1	42	1.27
26700666--26700692	7	3.9	7	100	0	54	85	0	0	14	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26708297--26708390	45	2.1	45	91	0	152	29	25	19	25	1.98
26708396--26708529	50	2.7	50	87	3	189	30	28	16	24	1.96
26714905--26714933	9	3.3	9	95	4	51	79	6	0	13	0.93
26717311--26718336	514	2.0	514	97	0	1926	37	13	18	30	1.89
26719151--26719195	20	2.2	20	88	0	63	28	13	13	44	1.81
26720139--26720197	22	2.6	22	78	2	64	37	27	8	27	1.85
26725945--26725989	20	2.2	20	80	0	54	28	17	13	40	1.88
26731339--26731507	45	3.8	45	87	6	218	41	17	20	20	1.91
26731680--26731765	13	6.5	13	72	6	66	45	2	18	33	1.62
26736295--26736461	43	3.9	42	73	8	124	28	12	24	34	1.92
26737084--26737177	26	3.8	24	82	13	102	23	26	19	30	1.98
26737084--26737178	49	1.9	49	83	8	122	24	26	18	30	1.98
26739706--26739787	33	2.8	28	74	16	83	52	25	0	21	1.47
26762255--26762297	19	2.3	19	83	0	50	60	4	6	27	1.43
26768724--26768771	19	2.6	19	77	6	55	47	0	2	50	1.12
26780998--26781039	14	3.1	13	86	13	50	47	7	0	45	1.30
26789140--26789189	23	2.2	23	85	0	64	26	20	10	44	1.82
26789148--26789191	23	1.9	23	95	0	79	22	20	9	47	1.78
26791327--26791449	60	2.0	61	82	1	149	45	14	17	22	1.84
26792393--26792432	22	1.9	20	85	10	53	22	22	17	37	1.94
26793704--26793733	12	2.5	12	94	0	51	63	0	20	16	1.31
26793879--26793927	25	1.9	26	87	4	73	38	6	20	34	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26796440--26796465	12	2.2	12	100	0	52	7	15	30	46	1.74
26796454--26796586	41	3.3	39	78	5	115	35	20	21	23	1.96
26796471--26796606	39	3.4	40	80	3	150	38	20	19	21	1.93
26796657--26796747	41	2.2	41	96	0	164	18	21	28	30	1.97
26796726--26796768	21	2.0	21	100	0	86	13	18	30	37	1.90
26796685--26796809	62	2.0	62	95	0	223	17	22	28	31	1.97
26796654--26796850	103	1.9	103	95	0	358	18	22	29	29	1.97
26796747--26796897	41	3.7	41	96	0	266	19	23	29	27	1.98
26797102--26797400	7	42.7	7	67	14	82	18	1	39	41	1.59
26797249--26797317	36	1.9	35	88	2	102	21	0	36	42	1.53
26797234--26797292	22	2.7	22	82	7	68	20	0	40	38	1.53
26797000--26797266	125	2.1	125	100	0	534	19	1	35	43	1.61
26797000--26797310	125	2.5	125	93	2	473	20	1	36	42	1.60
26799691--26799733	17	2.5	17	96	3	77	53	4	4	37	1.43
26801651--26801862	43	4.9	42	87	5	275	22	17	31	29	1.96
26801651--26801862	86	2.5	86	87	4	320	22	17	31	29	1.96
26803921--26804028	2	53.5	2	82	5	110	46	0	47	6	1.28
26806527--26806635	54	2.0	55	96	1	202	36	5	8	49	1.56
26818087--26818119	16	2.1	16	94	0	57	39	0	0	60	0.97
26818114--26818460	173	2.0	174	98	0	678	40	9	6	44	1.61
26821066--26821106	13	3.1	13	89	6	64	46	0	0	53	1.00
26822030--26822071	18	2.3	18	83	0	57	23	45	0	30	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26822042--26822083	18	2.3	18	84	8	50	33	28	0	38	1.58
26825290--26825324	16	2.2	16	100	0	70	48	20	0	31	1.50
26832308--26832349	22	1.9	22	90	9	68	54	0	2	42	1.13
26835280--26835520	119	2.0	119	99	0	473	29	15	13	41	1.85
26839446--26839501	21	2.8	20	78	5	60	26	7	3	62	1.38
26845497--26845530	5	6.8	5	87	12	52	17	2	0	79	0.86
26845949--26845978	14	2.1	14	93	0	51	86	0	10	3	0.67
26846406--26846499	48	2.0	48	100	0	188	31	19	19	29	1.96
26853660--26853685	5	5.2	5	100	0	52	42	19	19	19	1.90
26855886--26855945	11	5.1	11	77	15	57	70	1	0	28	0.97
26858904--26858954	21	2.6	20	78	9	61	50	1	0	47	1.12
26874701--26874731	3	10.3	3	100	0	62	67	0	32	0	0.91
26874893--26874926	3	11.7	3	93	6	61	0	29	0	70	0.87
26874893--26874928	14	2.5	14	95	4	63	0	27	0	72	0.85
26874896--26874930	17	2.1	17	94	5	63	0	25	0	74	0.82
26875361--26875421	29	2.1	31	85	14	85	45	4	14	34	1.67
26875365--26875429	29	2.2	29	81	10	80	49	4	13	32	1.63
26875482--26875523	21	2.0	21	100	0	84	33	28	14	23	1.94
26875565--26875626	31	2.0	31	84	9	83	25	8	17	48	1.75
26878026--26878076	12	4.2	12	82	7	59	66	9	1	21	1.31
26878039--26878069	9	3.6	9	95	4	55	70	6	0	22	1.09
26878231--26878257	5	5.4	5	100	0	54	81	0	0	18	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26880629--26880744	52	2.2	52	80	8	121	48	14	18	18	1.81
26883498--26883623	40	3.1	41	84	4	168	37	19	21	22	1.94
26883667--26883825	40	3.9	41	80	4	196	17	17	33	31	1.94
26884052--26884083	15	2.1	15	94	0	55	25	0	34	40	1.56
26884114--26884185	21	3.4	21	75	9	65	20	1	41	36	1.61
26884371--26884418	7	6.7	7	82	2	60	29	0	35	35	1.58
26884363--26884418	14	3.9	14	93	4	94	28	0	37	33	1.58
26884360--26884422	29	2.2	29	88	2	101	26	0	36	36	1.57
26884417--26884461	15	3.1	15	90	3	65	20	0	44	35	1.51
26884433--26884509	15	5.3	15	72	16	54	29	1	32	36	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210