genome.fa.s3.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  108  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36511487--36511662	50	3.5	50	91	0	271	26	23	29	20	1.99
36516883--36516908	5	5.2	5	100	0	52	42	19	19	19	1.90
36517907--36517943	9	4.1	9	92	0	56	27	10	16	45	1.80
36517997--36518027	9	3.4	9	90	0	53	38	22	12	25	1.90
36518995--36519050	28	2.0	28	100	0	112	42	17	7	32	1.77
36519247--36519282	16	2.2	16	90	0	54	61	0	2	36	1.11
36521137--36521978	421	2.0	421	99	0	1675	38	9	14	38	1.78
36524260--36524312	20	2.6	21	79	11	56	41	3	3	50	1.38
36526177--36526212	16	2.2	16	90	0	54	61	0	2	36	1.11
36526315--36526600	138	2.1	139	95	4	524	40	22	7	29	1.81
36539912--36540035	65	1.9	66	85	8	173	53	8	15	23	1.68
36540910--36540938	2	14.5	2	100	0	58	51	0	48	0	1.00
36544754--36544807	27	2.0	27	100	0	108	11	14	14	59	1.62
36558484--36558527	23	2.0	22	82	13	54	31	20	4	43	1.72
36558669--36558712	23	1.9	22	82	17	54	36	25	0	38	1.56
36558757--36558850	45	2.1	45	87	0	134	30	23	19	26	1.98
36558856--36559026	51	3.4	50	81	4	209	32	26	16	24	1.96
36570405--36570464	29	2.1	29	96	0	111	28	11	38	21	1.89
36570476--36570546	36	2.0	36	82	0	88	19	25	22	32	1.98
36572319--36572348	14	2.1	14	93	0	51	40	6	3	50	1.45
36573566--36573603	17	2.2	17	95	0	67	78	0	7	13	0.94
36573629--36573764	68	2.0	67	90	4	211	30	12	22	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36578328--36578368	19	2.2	19	100	0	82	46	7	4	41	1.53
36579594--36579643	19	2.5	20	83	3	66	62	18	2	18	1.43
36583004--36583041	6	6.5	6	87	6	51	78	0	21	0	0.74
36583005--36583041	17	2.2	17	90	0	56	78	0	21	0	0.75
36586065--36586106	6	6.8	6	82	12	50	76	0	2	21	0.90
36596250--36596291	21	2.0	22	90	4	68	38	26	4	30	1.77
36598351--36598510	43	3.7	43	75	6	137	30	25	18	26	1.98
36607007--36607031	11	2.3	11	100	0	50	92	0	8	0	0.40
36610930--36610990	17	3.4	17	68	12	50	32	3	13	50	1.57
36610925--36610996	37	1.9	37	94	0	126	33	2	15	48	1.59
36613141--36613251	55	2.0	55	87	3	161	44	2	2	50	1.30
36621652--36621884	43	5.4	43	85	5	276	29	25	16	28	1.97
36625365--36625579	64	3.4	66	81	9	216	33	7	17	40	1.78
36625399--36625575	64	2.8	64	85	6	229	33	7	18	40	1.79
36627992--36628092	28	3.6	27	90	5	139	27	23	22	25	2.00
36627986--36628109	56	2.2	57	79	12	150	29	23	21	25	1.99
36628578--36628638	27	2.3	27	85	5	88	24	16	18	40	1.90
36629977--36630025	25	2.0	25	92	8	82	14	44	16	24	1.84
36629977--36630031	25	2.3	23	85	14	69	14	45	16	23	1.84
36638913--36638954	21	2.0	21	90	0	66	33	14	47	4	1.65
36638919--36638965	21	2.2	21	80	0	58	36	17	42	4	1.68
36639362--36639578	43	5.0	43	84	2	229	30	15	23	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36639369--36639578	86	2.4	86	84	1	260	30	16	23	29	1.96
36644764--36644839	1	76.0	1	70	0	53	85	13	1	0	0.66
36644764--36644839	14	5.6	13	80	13	91	85	13	1	0	0.66
36644763--36644832	6	11.8	6	81	14	83	84	15	0	0	0.63
36644763--36644839	11	6.6	11	81	11	82	84	14	1	0	0.69
36645274--36645335	6	10.2	6	78	16	58	79	3	17	0	0.87
36645277--36645321	19	2.2	21	84	7	58	82	4	13	0	0.82
36645276--36645335	13	4.5	13	79	6	57	80	3	16	0	0.85
36645274--36645337	32	2.1	30	85	5	83	78	3	18	0	0.89
36645609--36645696	45	1.9	47	83	4	117	28	13	9	48	1.73
36648044--36648353	132	2.4	132	87	1	435	31	19	22	26	1.98
36652597--36652636	21	1.9	21	90	10	64	12	37	27	22	1.90
36656243--36656271	12	2.3	13	94	5	51	10	17	0	72	1.11
36659422--36659454	15	2.2	15	85	15	50	63	0	3	33	1.10
36659424--36659454	16	1.9	16	93	0	53	64	0	3	32	1.09
36660878--36660947	20	3.6	19	83	11	88	38	1	5	54	1.33
36661238--36661281	22	2.0	22	100	0	88	31	4	18	45	1.69
36661243--36661289	22	2.2	22	84	3	60	31	12	12	42	1.81
36663279--36663367	42	2.1	42	97	0	169	30	28	6	34	1.83
36667441--36668019	308	1.9	308	88	2	878	29	17	14	38	1.89
36669615--36669673	29	2.0	29	100	0	118	20	6	16	55	1.63
36669622--36669683	29	2.1	29	85	5	81	24	4	19	51	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36679111--36679296	93	2.0	93	98	0	363	32	9	19	39	1.83
36687510--36687587	23	3.4	23	87	1	113	21	21	19	37	1.95
36688936--36689034	23	4.3	23	84	0	126	32	24	18	25	1.97
36688936--36689033	46	2.1	46	88	0	142	32	24	18	24	1.97
36689642--36689767	45	2.8	45	100	0	252	26	23	3	46	1.69
36689742--36689778	17	2.2	17	95	0	65	27	29	0	43	1.55
36691361--36691388	14	2.0	14	100	0	56	57	0	14	28	1.38
36695207--36695379	32	5.4	32	83	0	213	37	20	20	20	1.94
36695549--36695611	24	2.6	24	84	0	72	44	22	7	25	1.79
36695628--36695880	27	9.4	27	80	2	258	25	22	16	34	1.95
36695628--36695880	54	4.7	54	83	2	285	25	22	16	34	1.95
36715387--36715483	34	2.9	34	100	0	194	26	13	15	44	1.83
36716922--36717064	76	1.9	78	83	5	193	35	4	18	41	1.72
36722088--36722739	323	2.0	324	99	0	1297	41	6	11	39	1.68
36723733--36723968	125	1.9	124	80	6	280	39	1	35	23	1.63
36723974--36724034	30	2.0	30	87	6	88	34	0	44	21	1.53
36724081--36724119	18	2.2	18	90	9	62	25	10	15	48	1.76
36725630--36725725	37	2.6	38	83	3	113	31	33	14	20	1.93
36726961--36726997	18	2.1	18	100	0	74	40	5	37	16	1.71
36727409--36727446	18	2.1	18	85	9	51	34	0	18	47	1.49
36728654--36728705	20	2.8	17	82	8	50	21	44	23	11	1.84
36729929--36729974	23	2.0	23	100	0	92	30	30	21	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36733540--36735470	965	2.0	966	99	0	3855	35	22	10	30	1.89
36737891--36737955	9	6.8	9	70	19	51	36	1	0	61	1.05
36737916--36737955	20	2.0	21	90	5	64	37	0	0	62	0.95
36746672--36746714	21	2.0	21	86	4	59	44	20	6	27	1.77
36760886--36761682	44	17.8	45	79	4	684	33	16	19	30	1.94
36760899--36761682	89	8.8	89	80	5	652	34	15	20	29	1.94
36760886--36761664	179	4.4	178	79	5	673	33	16	19	30	1.94
36764700--36764747	22	2.2	22	88	7	71	33	14	14	37	1.87
36768971--36769000	5	5.8	5	92	7	51	60	0	0	40	0.97
36770484--36770511	13	2.2	13	100	0	56	14	10	35	39	1.81
36775861--36775912	21	2.4	22	77	3	61	48	19	1	30	1.60
36778002--36778038	19	1.9	19	88	0	56	70	5	5	18	1.27
36779795--36779843	23	2.1	24	92	3	82	51	0	0	48	1.00
36779788--36779923	24	5.2	24	72	21	89	52	0	0	46	1.11
36779865--36779937	24	2.9	25	82	10	87	53	0	1	45	1.09
36780152--36780190	16	2.4	16	86	0	51	35	15	5	43	1.69
36787119--36787245	62	2.1	59	89	5	193	44	2	3	50	1.30
36787167--36787248	38	2.2	37	78	10	87	45	2	2	50	1.28
36788675--36788707	13	2.6	13	95	4	59	39	42	0	18	1.50
36788705--36788813	39	2.8	39	90	1	175	52	27	2	17	1.58
36788946--36789008	17	3.5	17	71	12	63	33	3	14	49	1.59
36788926--36789017	37	2.5	37	89	7	125	33	4	15	46	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36790785--36790835	23	2.2	23	92	0	84	35	0	13	50	1.42
36790794--36790835	13	3.5	13	81	18	63	35	0	14	50	1.43
36804783--36805539	44	17.2	44	76	6	606	29	15	24	29	1.96
36804775--36805546	131	5.8	133	86	3	907	30	15	24	29	1.96
36804783--36805539	175	4.3	177	80	5	698	29	15	24	29	1.96
36805434--36805657	119	1.9	120	80	8	269	31	12	24	31	1.93
36819338--36819432	48	2.0	48	91	0	154	24	31	20	24	1.98
36821497--36821556	25	2.5	24	78	8	68	30	21	25	23	1.99
36828560--36828601	18	2.5	17	84	7	50	71	7	0	21	1.09
36828783--36828845	33	1.9	34	84	12	87	57	1	0	41	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210