genome.fa.s3.2.7.7.80.10.50.1000.196.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  196  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65118844--65118901	25	2.3	24	80	16	73	50	0	3	46	1.18
65118885--65118915	13	2.4	13	94	0	53	61	0	3	35	1.12
65118844--65118908	24	2.6	25	77	20	73	49	0	3	47	1.17
65123930--65124193	72	3.6	73	79	7	304	39	11	12	36	1.80
65128542--65128584	18	2.5	17	78	10	52	74	2	2	20	1.04
65128831--65128863	16	2.0	17	88	5	50	27	3	0	69	1.03
65129899--65129960	29	2.2	28	83	13	74	40	1	0	58	1.08
65141103--65141136	11	3.1	11	86	0	50	23	32	0	44	1.54
65141103--65141155	22	2.3	23	83	3	63	24	30	1	43	1.65
65142031--65142118	44	2.0	44	84	0	113	25	10	7	56	1.59
65144857--65144922	9	7.2	9	86	10	89	39	28	10	21	1.86
65144857--65144922	20	3.6	18	80	11	89	39	28	10	21	1.86
65144892--65144934	11	4.2	11	85	14	65	46	27	6	18	1.75
65145945--65145986	22	1.9	22	85	9	59	59	11	0	28	1.33
65146298--65146353	19	3.1	18	82	10	60	55	5	0	39	1.23
65146277--65146348	20	3.7	19	83	7	83	58	6	0	34	1.25
65147613--65147674	26	2.4	26	76	7	65	70	1	1	25	1.05
65150638--65150677	21	1.9	21	90	10	64	35	10	2	52	1.48
65153112--65153191	29	2.8	28	74	14	65	33	2	0	63	1.08
65153090--65153211	40	3.0	40	86	6	147	36	2	0	60	1.16
65154049--65154113	5	13.0	5	100	0	130	40	20	0	40	1.52
65169822--65169950	63	2.0	63	86	0	177	28	19	17	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65170460--65170492	16	2.1	16	94	0	57	21	33	6	39	1.78
65172298--65172787	243	2.0	244	99	0	973	31	9	6	52	1.61
65194911--65195017	51	2.1	51	85	3	144	34	9	34	21	1.86
65229348--65229553	103	2.0	103	86	0	286	33	8	20	36	1.83
65231555--65231579	3	8.3	3	100	0	50	0	32	0	68	0.90
65232813--65232853	2	20.5	2	94	0	73	48	0	51	0	1.00
65235472--65235515	24	1.9	24	90	9	74	36	0	2	61	1.09
65235582--65235859	68	4.1	68	96	1	499	45	8	4	41	1.56
65235680--65235707	9	3.1	9	100	0	56	57	10	0	32	1.33
65235748--65235775	9	3.1	9	100	0	56	57	10	0	32	1.33
65235848--65235889	16	2.6	16	92	0	66	42	7	2	47	1.43
65235863--65235918	23	2.5	23	82	2	69	44	1	1	51	1.22
65237551--65237740	97	2.0	97	87	2	274	31	18	20	30	1.96
65249856--65249895	20	2.0	20	90	0	62	25	0	2	72	0.97
65251089--65251126	20	1.9	20	88	0	58	21	13	15	50	1.78
65264719--65264748	2	15.5	2	93	6	53	46	0	0	53	1.00
65269325--65269385	30	2.0	30	90	0	95	40	18	14	26	1.89
65282226--65282253	5	5.6	5	100	0	56	39	21	17	21	1.93
65282704--65282761	30	1.9	30	85	0	80	44	0	36	18	1.50
65282977--65283004	9	3.1	9	100	0	56	32	10	10	46	1.73
65288503--65288566	33	2.0	32	87	3	92	26	1	0	71	0.94
65288508--65288577	33	2.1	33	81	5	79	22	1	4	71	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65288881--65288917	18	2.1	18	90	5	58	78	8	8	5	1.09
65289203--65289236	17	2.0	17	88	11	52	67	17	0	14	1.23
65290261--65290299	15	2.6	15	83	0	51	41	5	2	51	1.38
65293850--65293918	28	2.6	25	76	13	66	57	2	2	36	1.28
65295863--65295960	39	2.6	38	78	13	103	56	2	0	41	1.11
65296082--65296110	13	2.2	13	100	0	58	75	0	0	24	0.80
65296272--65296321	15	3.5	15	78	13	52	28	4	0	68	1.08
65312032--65312108	31	2.5	31	83	8	86	27	5	14	53	1.62
65322954--65323064	48	2.3	48	80	0	123	18	24	27	28	1.98
65322978--65323060	23	3.5	23	68	18	62	20	24	26	28	1.99
65323730--65323866	54	2.5	54	84	0	184	38	11	18	31	1.86
65324534--65324580	17	2.8	17	90	0	67	23	21	21	34	1.97
65328770--65328875	25	4.3	25	73	7	74	33	21	25	18	1.96
65328832--65328935	25	4.2	24	75	12	77	35	17	26	20	1.94
65330305--65330352	20	2.2	23	75	25	66	33	0	8	58	1.28
65330313--65330359	20	2.3	20	96	3	85	36	0	6	57	1.24
65332866--65332916	23	2.3	23	96	3	95	68	0	0	31	0.90
65336481--65336514	14	2.4	14	90	9	52	58	0	0	41	0.98
65337154--65337207	26	2.1	26	100	0	108	37	22	11	29	1.89
65344321--65345235	457	2.0	457	100	0	1830	31	16	21	29	1.96
65348894--65349096	46	4.5	46	94	1	347	33	14	23	28	1.94
65350343--65350484	49	2.9	49	83	2	176	26	14	26	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65355200--65355424	46	4.9	46	96	0	414	32	15	21	31	1.94
65358960--65358995	18	2.0	18	88	0	54	19	8	19	52	1.70
65359277--65359320	20	2.3	18	84	7	52	36	0	4	59	1.18
65359271--65359386	38	3.2	38	67	13	93	31	3	5	60	1.35
65386076--65386167	3	30.7	3	93	4	159	33	1	0	65	1.00
65388149--65388438	42	7.0	41	82	5	321	32	21	21	25	1.98
65388913--65388963	21	2.4	21	90	0	75	1	45	17	35	1.60
65395112--65395144	17	1.9	17	100	0	66	51	6	6	36	1.51
65397930--65398091	73	2.2	73	98	0	315	35	13	18	32	1.90
65398500--65398530	7	4.4	7	100	0	62	48	38	0	12	1.42
65399483--65399537	21	2.7	20	77	5	56	38	36	3	21	1.71
65399976--65400188	114	1.9	114	90	3	340	32	18	13	35	1.90
65403987--65404025	19	2.1	19	85	0	51	35	20	7	35	1.81
65406097--65406151	20	2.7	20	89	10	85	34	12	12	40	1.82
65406113--65406195	21	4.2	20	69	23	59	43	9	7	39	1.65
65406122--65406193	37	1.9	37	82	2	90	50	11	6	31	1.65
65406222--65406499	37	7.7	35	78	10	244	43	10	12	33	1.76
65406223--65406523	17	16.4	18	70	15	190	43	9	12	33	1.76
65406476--65406521	22	2.0	22	91	4	74	41	8	8	41	1.67
65407211--65407305	46	2.1	45	82	5	111	3	25	1	70	1.08
65407807--65407942	58	2.3	59	86	3	177	40	6	19	33	1.77
65407798--65407942	29	5.0	29	76	8	143	40	6	17	34	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65408140--65409216	153	7.0	154	83	9	1038	35	19	16	27	1.94
65408140--65409216	77	13.9	76	82	9	1088	35	19	16	27	1.94
65410056--65410118	16	4.1	15	79	18	60	1	9	3	85	0.77
65421128--65421316	19	10.0	20	67	19	86	44	9	8	37	1.67
65421132--65421232	36	2.7	36	83	8	114	44	8	9	36	1.69
65421174--65421312	56	2.4	58	77	10	151	46	10	8	34	1.70
65421206--65421258	20	2.8	17	83	16	61	35	13	13	37	1.83
65421206--65421289	37	2.2	39	82	4	100	40	10	10	38	1.75
65421329--65421635	17	16.8	17	68	15	159	42	10	13	32	1.78
65421328--65421604	37	7.7	35	79	8	240	42	10	13	33	1.77
65421329--65421628	18	16.4	18	70	14	186	43	10	13	33	1.77
65421313--65421548	75	3.2	72	78	12	250	43	10	14	32	1.79
65421581--65421626	23	2.1	22	84	8	58	39	8	8	43	1.66
65421581--65421626	22	2.0	22	87	4	65	39	8	8	43	1.66
65422018--65422543	264	2.0	265	98	0	1027	25	19	23	31	1.98
65422582--65422676	46	2.1	45	82	5	111	3	25	1	70	1.08
65423168--65423313	29	5.0	29	78	8	154	40	7	17	34	1.78
65423178--65423313	58	2.3	59	87	3	186	40	7	19	33	1.79
65424008--65424048	16	2.7	15	82	17	50	12	12	0	75	1.05
65432774--65432817	12	3.6	12	87	6	61	65	2	2	29	1.16
65433341--65433384	22	2.0	23	95	4	81	52	0	0	47	1.00
65433959--65433988	15	1.9	15	93	6	51	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65439405--65439457	22	2.5	21	81	6	54	45	0	0	54	0.99
65443172--65443338	43	3.9	43	85	2	183	27	32	16	23	1.96
65446047--65446081	3	11.7	3	100	0	70	65	0	0	34	0.93
65451427--65451464	18	2.2	17	95	4	67	42	15	7	34	1.76
65459993--65460045	16	3.3	16	83	0	70	35	30	22	11	1.89
65467701--65467727	13	2.1	13	100	0	54	55	7	7	29	1.55
65468910--65469293	187	2.1	186	93	0	660	28	11	16	43	1.82
65469724--65469757	2	17.0	2	100	0	68	50	0	0	50	1.00
65469838--65469871	2	17.0	2	100	0	68	50	0	0	50	1.00
65471291--65471316	2	13.0	2	100	0	52	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210