genome.fa.s3.2.7.7.80.10.50.1000.185.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  185  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61525303--61525364	27	2.3	27	94	0	106	43	6	0	50	1.28
61525475--61525570	19	5.2	18	72	14	79	38	12	0	48	1.41
61525475--61525570	37	2.6	37	94	0	165	38	12	0	48	1.41
61525494--61525557	18	3.5	18	80	4	83	42	12	0	45	1.42
61526108--61526186	27	2.9	27	94	0	131	15	32	20	31	1.93
61526110--61526195	27	3.2	27	91	0	127	15	30	23	31	1.95
61527457--61527508	16	3.2	16	97	0	95	25	0	34	40	1.56
61533354--61533452	51	1.9	52	89	4	155	40	12	3	44	1.57
61538095--61538139	14	2.8	17	70	22	51	15	17	13	53	1.73
61542508--61542549	18	2.3	18	91	0	66	71	2	0	26	0.98
61547378--61547428	24	2.2	23	82	10	59	74	7	3	13	1.18
61547378--61547451	23	3.1	25	79	11	66	71	9	2	16	1.23
61552108--61552145	18	2.1	18	85	9	51	65	5	2	26	1.27
61558428--61558471	16	2.8	16	86	10	63	31	2	0	65	1.05
61561070--61561102	15	2.4	14	85	14	50	45	0	0	54	0.99
61564457--61564494	16	2.4	16	90	0	58	28	5	10	55	1.56
61565648--61565758	33	3.3	33	81	3	116	43	13	0	42	1.50
61565651--61565770	34	3.6	32	76	9	114	43	15	0	40	1.53
61567922--61567969	20	2.5	19	80	6	60	70	4	14	10	1.29
61571005--61571062	28	2.0	31	90	10	95	37	18	13	29	1.90
61571675--61571719	17	2.6	17	86	6	65	31	0	6	62	1.21
61575196--61575250	21	2.6	21	94	0	101	38	9	10	41	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61575171--61575245	21	3.5	20	81	12	78	38	12	9	40	1.75
61579417--61579542	34	3.7	34	76	12	109	43	13	2	40	1.57
61579586--61579648	15	4.6	15	82	9	57	46	39	0	14	1.45
61579588--61579626	6	6.3	6	88	5	60	38	43	0	17	1.50
61581930--61581967	16	2.4	17	86	8	53	44	5	2	47	1.39
61585073--61585115	21	2.0	21	86	8	61	48	2	0	48	1.14
61585289--61585341	13	4.1	13	80	9	72	35	26	7	30	1.84
61586708--61586774	13	5.3	12	71	15	55	22	7	1	68	1.23
61586832--61586859	3	9.3	3	100	0	56	32	0	0	67	0.91
61593068--61593109	21	2.0	21	81	9	50	45	9	4	40	1.58
61594972--61595032	19	3.4	17	78	10	68	49	8	9	32	1.66
61594971--61595032	18	3.4	18	82	8	81	48	8	9	33	1.65
61594931--61595032	36	2.8	36	80	5	100	44	7	8	39	1.65
61595210--61595303	20	4.9	19	71	22	72	48	10	11	28	1.73
61595210--61595308	17	5.3	18	67	25	64	46	10	11	32	1.73
61595273--61595311	20	1.9	21	94	5	71	38	10	10	41	1.73
61595630--61595662	16	2.0	17	94	5	59	0	21	0	78	0.75
61595771--61595804	13	2.6	13	90	0	59	0	5	11	82	0.83
61596482--61596589	29	3.7	30	81	3	121	40	5	22	31	1.77
61596834--61596977	49	3.0	50	78	7	161	31	27	15	25	1.95
61597724--61597879	23	7.4	20	74	16	61	39	23	19	17	1.92
61597753--61597788	16	2.2	16	90	0	54	38	19	25	16	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61597777--61597873	23	4.2	23	91	0	167	41	22	17	18	1.90
61601029--61601091	13	4.8	13	80	0	72	38	22	6	33	1.79
61602599--61602630	17	1.9	16	93	6	55	87	0	12	0	0.54
61603498--61603921	143	3.0	143	88	0	596	29	20	22	28	1.98
61603852--61603986	44	3.0	46	71	6	141	30	22	23	23	1.99
61603668--61604153	232	2.1	232	86	0	659	30	20	22	26	1.98
61603837--61604010	89	2.0	89	87	0	249	31	22	21	24	1.99
61603528--61604284	375	2.0	375	89	0	1136	29	21	22	26	1.99
61603528--61604434	375	2.4	369	82	4	892	29	21	22	26	1.99
61603900--61604518	143	4.3	143	90	0	916	30	21	21	26	1.98
61605117--61605171	19	2.8	19	82	15	60	67	10	20	1	1.30
61606141--61606207	13	5.3	12	71	15	55	20	8	1	68	1.25
61606265--61606289	3	8.3	3	100	0	50	32	0	0	68	0.90
61606378--61606407	5	5.8	5	92	7	51	20	3	0	76	0.92
61607444--61607482	17	2.4	17	86	4	53	28	0	7	64	1.21
61609834--61609903	19	3.6	18	69	19	52	57	7	1	34	1.35
61609850--61609897	19	2.5	19	86	10	62	56	8	0	35	1.30
61609911--61609948	11	3.5	11	82	7	51	73	0	0	26	0.83
61609908--61609948	21	2.0	21	95	0	73	68	0	0	31	0.90
61609952--61610110	83	1.9	83	98	0	309	41	10	8	39	1.70
61611556--61611594	14	2.8	14	88	0	60	38	12	20	28	1.89
61613568--61613610	19	2.3	19	88	4	70	58	4	0	37	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61613570--61613619	19	2.6	19	87	9	66	58	8	0	34	1.28
61613599--61613653	26	2.1	26	86	6	76	54	5	0	40	1.23
61614210--61614239	15	2.0	15	93	0	51	70	3	6	20	1.25
61615626--61615675	24	2.1	24	85	3	66	64	8	6	22	1.43
61615875--61615936	31	2.0	31	100	0	124	45	9	22	22	1.81
61616033--61616137	52	2.0	52	94	0	183	26	20	25	27	1.99
61623037--61623086	20	2.5	19	78	12	55	70	4	16	10	1.30
61623268--61623301	16	2.1	17	88	5	52	44	5	2	47	1.42
61630015--61630054	20	1.9	20	85	10	53	65	0	2	32	1.06
61633925--61633981	30	1.9	30	85	3	80	1	17	0	80	0.79
61645157--61645198	17	2.5	17	92	3	68	33	0	2	64	1.07
61646387--61646423	9	4.1	9	92	0	65	29	10	13	45	1.77
61646477--61646507	9	3.4	9	90	0	53	38	22	12	25	1.90
61647293--61647331	15	2.5	16	83	4	53	53	30	0	15	1.42
61649412--61649461	20	2.5	19	78	12	55	70	4	16	10	1.30
61649643--61649676	16	2.1	17	88	5	52	44	5	2	47	1.42
61649603--61649771	83	2.0	84	98	1	331	40	9	8	41	1.67
61649726--61649759	16	2.1	17	88	5	52	44	5	2	47	1.42
61653510--61653548	19	2.1	19	90	4	62	56	5	0	38	1.22
61656792--61656825	17	2.0	17	100	0	68	5	29	17	47	1.71
61658630--61658708	38	2.0	40	83	9	101	30	1	2	65	1.13
61660312--61660346	17	2.1	17	94	0	61	65	2	5	25	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61663762--61663792	15	2.1	15	93	0	53	22	29	6	41	1.78
61666654--61666683	15	2.0	15	93	0	51	23	46	6	23	1.75
61667622--61667652	15	2.1	15	100	0	62	22	32	6	38	1.80
61672735--61672776	14	3.1	14	93	3	68	38	11	21	28	1.89
61675947--61675972	7	3.7	7	100	0	52	11	0	42	46	1.40
61677418--61677542	29	4.2	30	81	7	148	38	19	3	39	1.68
61677418--61677554	59	2.3	59	85	0	175	36	21	3	38	1.71
61678039--61678085	13	3.7	13	85	2	60	74	0	25	0	0.82
61678051--61678082	15	2.1	16	94	5	57	78	0	21	0	0.76
61678334--61678377	9	4.9	9	83	10	54	81	0	18	0	0.68
61678534--61678582	5	9.6	5	88	4	71	34	2	0	63	1.06
61678534--61678579	16	2.9	16	93	3	76	36	2	0	60	1.09
61678534--61678583	21	2.4	21	90	3	75	34	2	0	64	1.05
61678533--61678582	26	1.9	26	91	0	82	34	2	0	64	1.05
61678750--61678811	21	3.2	18	81	9	61	40	14	9	35	1.79
61678750--61678812	20	3.2	20	86	4	83	41	14	9	34	1.78
61678922--61679030	17	6.2	17	77	14	71	36	11	10	41	1.76
61678922--61679222	35	8.5	34	72	17	179	32	12	12	42	1.80
61678950--61679276	18	18.2	18	71	13	210	29	12	12	45	1.79
61679253--61679324	37	1.9	38	82	2	92	33	6	9	50	1.62
61679293--61679333	20	2.0	20	85	0	55	31	7	7	53	1.56
61680902--61680947	24	2.0	23	87	12	67	28	26	0	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61680913--61680957	23	1.9	24	81	4	56	33	24	0	42	1.55
61681104--61681321	3	72.7	3	100	0	436	66	0	0	33	0.92
61689021--61689530	75	6.5	75	82	10	542	29	16	21	32	1.95
61689181--61689501	166	1.9	165	91	1	527	28	16	20	33	1.95
61689102--61689573	241	2.0	239	86	5	673	29	17	20	32	1.96
61689638--61689833	96	2.0	96	97	0	365	31	15	18	34	1.92
61689804--61689951	30	4.9	30	79	4	156	34	21	5	38	1.77
61689804--61689952	59	2.5	58	81	5	172	34	21	6	38	1.78
61690445--61690489	15	3.1	15	81	9	58	77	0	22	0	0.76
61690449--61690487	20	2.0	20	90	10	62	76	0	23	0	0.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210