genome.fa.s3.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  131  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43525025--43525121	18	5.3	18	76	12	83	60	1	3	35	1.19
43525075--43525153	8	9.0	8	73	17	59	65	0	6	27	1.16
43525084--43525172	29	3.1	28	79	10	101	65	1	5	28	1.22
43527635--43527871	50	4.6	50	84	4	271	22	28	21	27	1.99
43528478--43528642	49	3.4	49	77	8	149	29	16	23	30	1.96
43532586--43532696	28	4.0	28	79	2	125	29	16	17	36	1.91
43533253--43533323	34	2.1	34	94	5	126	33	19	5	40	1.75
43534209--43535871	836	2.0	836	100	0	3326	37	14	12	34	1.85
43536042--43536138	18	5.3	18	76	12	83	60	1	3	35	1.19
43536092--43536170	8	9.0	8	73	17	59	65	0	6	27	1.16
43536101--43536189	29	3.1	28	79	10	101	65	1	5	28	1.22
43536722--43536797	36	2.1	35	88	7	109	28	7	2	60	1.38
43538491--43538537	18	2.5	19	76	13	53	34	2	0	63	1.06
43539156--43539190	7	5.0	7	100	0	70	42	0	0	57	0.99
43539156--43539199	21	2.0	21	91	4	70	40	0	0	59	0.98
43545707--43545839	50	2.7	49	84	4	169	22	29	20	27	1.98
43548099--43548182	43	2.0	43	95	0	150	25	21	20	33	1.97
43551497--43551558	16	3.9	16	69	10	56	38	33	9	17	1.83
43551535--43551612	32	2.5	33	85	8	108	29	33	10	26	1.89
43551789--43552035	52	4.8	52	78	3	201	39	17	13	30	1.87
43553444--43553500	26	2.2	26	87	6	80	42	8	14	35	1.76
43556853--43556894	22	1.9	22	85	9	59	59	21	0	19	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43557622--43557662	21	2.1	19	86	9	55	39	4	14	41	1.67
43578379--43578451	37	1.9	39	81	10	89	60	4	5	30	1.38
43584607--43584647	20	2.1	19	86	4	55	53	0	24	21	1.46
43597674--43597914	29	8.3	29	81	3	173	24	17	21	36	1.94
43597726--43597914	87	2.2	86	80	5	211	25	18	21	34	1.96
43599626--43599672	19	2.4	19	86	10	60	23	4	0	72	1.02
43607415--43607441	7	3.9	7	100	0	54	14	0	0	85	0.61
43615484--43615525	3	14.3	3	95	5	77	0	30	0	69	0.89
43617856--43617899	17	2.5	18	78	14	56	34	2	2	61	1.21
43617859--43617891	16	1.9	17	88	11	50	33	3	3	60	1.27
43628715--43628800	37	2.2	38	85	6	111	29	27	1	41	1.63
43630530--43630589	28	2.1	28	90	0	93	18	30	16	35	1.93
43633909--43633934	4	6.5	4	100	0	52	50	23	0	26	1.50
43640310--43640403	25	3.8	24	73	10	73	23	25	20	30	1.98
43640302--43640429	49	2.6	49	82	1	139	25	24	21	28	1.99
43640390--43640448	25	2.4	24	83	11	66	30	22	22	25	1.99
43662244--43662289	16	2.9	16	100	0	92	58	19	6	15	1.58
43662660--43662722	20	3.0	20	84	6	81	42	22	25	9	1.83
43665492--43665539	3	15.7	3	78	4	51	60	2	6	31	1.33
43665492--43665529	15	2.5	15	86	0	58	60	2	7	28	1.38
43667047--43667932	51	18.2	49	77	9	825	30	23	16	30	1.96
43667047--43667932	148	6.1	139	77	10	751	30	23	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43667040--43667932	97	9.2	97	83	5	1007	30	23	16	30	1.96
43667938--43668562	44	13.9	44	73	12	339	29	23	18	28	1.98
43668096--43668560	89	5.3	88	73	12	240	30	23	18	27	1.98
43668234--43668559	132	2.5	132	81	7	376	30	22	18	27	1.97
43668083--43668513	221	1.9	222	81	5	523	29	24	17	28	1.97
43668890--43668947	24	2.4	24	97	0	107	25	29	12	32	1.92
43669850--43669975	43	2.9	44	85	1	164	17	21	17	43	1.88
43669852--43669978	44	2.9	43	85	1	164	17	22	17	43	1.88
43671912--43671943	16	2.0	16	93	0	55	25	15	0	59	1.36
43672161--43672297	51	2.7	51	80	3	161	31	26	17	24	1.97
43677119--43677193	19	3.8	19	80	16	80	69	2	4	24	1.19
43677161--43677201	19	2.2	19	90	0	64	73	2	0	24	0.96
43677701--43677751	25	2.0	25	88	7	77	31	1	1	64	1.15
43678992--43679046	29	1.9	27	85	10	74	27	27	20	25	1.99
43680658--43680737	25	3.2	25	79	8	83	13	27	21	37	1.91
43680668--43680747	25	3.2	24	74	8	72	13	26	22	37	1.91
43680741--43680829	25	3.6	24	80	10	81	19	20	24	35	1.95
43680658--43680833	74	2.4	74	78	9	180	15	23	23	36	1.94
43680826--43680884	24	2.5	24	88	5	84	16	23	23	35	1.95
43680817--43680935	48	2.4	48	76	15	118	16	24	21	36	1.94
43680818--43680909	24	3.8	24	76	13	82	16	23	20	39	1.92
43680879--43680934	25	2.2	25	83	0	67	16	25	19	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43680898--43680952	25	2.2	25	87	6	76	21	21	21	34	1.97
43688513--43688543	9	3.4	9	90	0	53	25	12	22	38	1.90
43694883--43695008	27	4.7	26	77	8	92	25	22	33	19	1.97
43697695--43697745	26	2.0	26	88	0	75	23	25	13	37	1.92
43702422--43702466	22	2.0	22	100	0	90	35	24	22	17	1.95
43704673--43704705	17	1.9	17	88	11	50	66	30	3	0	1.06
43720253--43721853	800	2.0	800	100	0	3202	29	25	18	25	1.98
43725329--43725380	27	1.9	27	84	0	68	32	15	13	38	1.86
43741415--43741452	20	2.0	20	85	15	53	34	7	15	42	1.76
43747651--43747919	133	2.0	134	98	1	522	36	14	23	26	1.92
43752669--43752712	12	3.7	12	76	11	54	38	0	40	20	1.53
43752669--43752718	12	4.0	13	75	15	52	38	0	40	22	1.54
43753384--43753476	27	3.5	27	80	10	93	43	22	16	18	1.88
43753429--43753654	27	8.5	27	78	7	194	37	19	20	23	1.95
43753503--43753675	53	3.3	52	82	8	190	35	20	22	21	1.96
43753485--43753675	27	7.2	27	81	6	185	36	18	21	23	1.95
43753699--43753765	23	2.9	23	88	2	89	19	5	25	49	1.71
43753700--43753781	24	3.5	24	86	5	96	20	6	24	48	1.72
43753850--43753907	27	2.1	27	81	6	64	24	25	15	34	1.95
43753907--43753962	26	2.2	26	80	6	60	16	21	28	33	1.95
43753953--43754040	32	2.8	32	87	3	124	21	21	21	35	1.96
43753950--43754123	32	5.5	32	78	7	104	21	20	20	37	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43754173--43754225	26	2.0	26	88	0	79	18	28	20	32	1.97
43758618--43758652	12	2.9	12	100	0	70	31	25	8	34	1.86
43760707--43760755	21	2.3	21	83	13	57	22	0	12	65	1.26
43761707--43761752	23	2.0	23	83	8	58	28	2	19	50	1.60
43762855--43762890	14	2.6	14	90	0	63	22	38	13	25	1.91
43762947--43762999	28	1.9	27	84	3	70	37	16	20	24	1.93
43766596--43766656	3	20.3	3	100	0	122	67	0	0	32	0.91
43770541--43770803	43	6.2	43	74	3	190	38	16	19	26	1.92
43770569--43770680	42	2.7	42	78	0	125	38	15	19	26	1.91
43776408--43776438	14	2.2	14	100	0	62	58	6	6	29	1.48
43777349--43777375	14	1.9	14	100	0	54	59	0	7	33	1.25
43777349--43777382	14	2.4	14	90	0	50	58	5	5	29	1.45
43781565--43781628	28	2.3	30	76	13	73	53	7	7	31	1.58
43782572--43782601	14	2.2	14	94	5	53	33	6	20	40	1.78
43782585--43782624	20	2.0	20	95	0	71	30	12	15	42	1.83
43782571--43782634	34	1.9	32	84	12	85	34	9	15	40	1.80
43783866--43783930	32	2.0	32	96	0	121	52	16	3	27	1.59
43783869--43783938	32	2.4	29	86	11	90	54	17	2	25	1.57
43786176--43786211	2	18.0	2	88	0	54	47	2	0	50	1.15
43792941--43792976	19	1.9	18	94	5	63	30	19	0	50	1.48
43793900--43793957	29	2.0	29	80	12	66	41	25	1	31	1.66
43794236--43794274	18	2.2	17	86	4	51	48	5	0	46	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43794360--43794431	33	2.2	32	85	11	94	50	6	2	40	1.44
43794246--43794508	144	1.8	142	80	7	316	39	12	3	45	1.57
43794500--43794552	8	7.0	8	77	16	51	58	1	0	39	1.09
43794490--43794555	29	2.3	29	85	10	91	51	3	0	45	1.16
43794619--43794648	15	2.0	15	93	0	51	20	20	10	50	1.76
43799187--43799238	24	2.2	24	85	0	68	38	3	7	50	1.50
43801500--43801718	51	4.3	52	80	3	223	31	28	15	25	1.95
43809476--43809555	39	2.1	39	100	0	160	42	12	7	37	1.71
43817840--43817929	31	2.9	31	96	0	162	38	22	12	26	1.89
43820511--43820698	51	3.7	49	82	4	223	30	26	20	23	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210