genome.fa.s3.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  123  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41364073--41364108	17	2.1	17	94	0	63	63	5	2	27	1.30
41365837--41366107	44	6.3	42	68	16	162	23	19	23	32	1.97
41365867--41366203	128	2.6	128	92	0	550	24	21	21	32	1.98
41366210--41367611	50	28.1	50	69	3	793	24	21	22	30	1.99
41366212--41367436	100	12.3	100	88	1	1710	24	21	23	30	1.99
41366212--41367436	299	4.1	300	88	2	1793	24	21	23	30	1.99
41366212--41367436	199	6.1	200	87	1	1737	24	21	23	30	1.99
41367677--41367841	43	3.8	43	83	4	206	31	26	15	26	1.95
41367677--41367864	87	2.1	88	91	0	297	29	27	14	27	1.96
41367677--41367982	44	7.0	43	75	3	261	29	26	16	27	1.96
41367705--41367976	87	3.1	86	83	5	296	31	26	15	26	1.96
41369375--41369455	8	9.8	8	79	10	74	2	3	14	79	0.98
41369375--41369455	23	3.2	24	81	10	83	2	3	14	79	0.98
41372888--41372923	17	2.1	17	89	0	54	61	5	2	30	1.33
41375137--41375177	19	2.2	19	100	0	82	36	4	14	43	1.67
41375215--41375296	41	2.0	41	95	0	146	29	8	14	47	1.74
41377958--41378187	109	2.1	107	88	1	334	32	15	19	33	1.93
41379265--41379307	11	3.9	11	81	0	59	11	51	20	16	1.75
41379260--41379305	22	2.1	22	95	0	83	10	54	21	13	1.69
41383710--41383942	78	3.0	77	80	7	251	15	18	17	48	1.81
41393659--41393720	32	1.9	32	87	6	90	46	12	17	22	1.82
41394621--41394646	13	2.0	13	100	0	52	46	15	7	30	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41394848--41394886	20	1.9	21	84	5	53	30	0	5	64	1.15
41395840--41395864	7	3.6	7	100	0	50	28	0	12	60	1.32
41396451--41396493	18	2.4	18	88	0	59	20	30	9	39	1.84
41400002--41400396	127	3.1	126	90	3	591	29	17	15	36	1.91
41400467--41400566	34	3.0	33	82	4	119	47	16	0	37	1.47
41406967--41407010	19	2.4	18	85	14	63	25	0	2	72	0.96
41413057--41413091	17	2.1	18	89	10	56	48	0	8	42	1.33
41414036--41414223	51	3.7	51	78	8	177	26	14	25	33	1.94
41423087--41423192	56	1.9	56	94	0	185	50	14	13	21	1.76
41426226--41426285	27	2.2	27	90	0	93	26	18	35	20	1.95
41426703--41426742	16	2.7	15	85	11	55	42	5	0	52	1.23
41426700--41426746	16	3.0	16	78	9	53	42	6	0	51	1.27
41433060--41433089	6	5.0	6	100	0	60	33	0	0	66	0.92
41443122--41443157	16	2.3	16	90	4	56	58	5	13	22	1.56
41446985--41447018	17	1.9	18	94	5	61	20	23	0	55	1.43
41448728--41448765	3	12.7	3	100	0	76	34	0	0	65	0.93
41453570--41453623	24	2.2	24	90	0	81	37	12	20	29	1.90
41453895--41454091	44	4.5	43	69	11	139	28	21	23	26	1.99
41453899--41454213	132	2.4	133	91	1	490	29	20	23	26	1.99
41454024--41454451	220	1.9	220	88	0	649	28	20	24	27	1.99
41454251--41454437	44	4.2	44	72	5	144	25	18	25	30	1.98
41456243--41456301	3	19.7	3	100	0	118	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41458650--41458690	21	2.0	21	85	0	55	36	7	9	46	1.65
41462947--41462998	3	17.3	3	100	0	104	67	0	0	32	0.91
41464127--41464160	17	1.9	18	88	5	52	26	5	11	55	1.58
41471352--41471403	22	2.4	22	80	6	61	36	11	19	32	1.87
41472166--41472334	28	6.0	28	77	5	169	18	14	7	59	1.58
41472187--41472334	57	2.6	56	85	5	190	20	13	6	60	1.54
41472167--41472355	28	6.7	27	77	10	155	19	15	6	58	1.58
41472259--41472375	56	2.1	56	80	3	128	22	13	4	59	1.51
41479051--41479103	27	2.0	27	88	7	81	39	7	11	41	1.69
41480123--41480152	6	5.0	6	100	0	60	16	0	0	83	0.65
41486359--41486429	33	2.3	30	86	13	92	60	11	9	18	1.57
41491677--41491948	75	3.6	75	84	2	350	20	22	21	34	1.97
41494251--41494301	25	2.1	24	85	10	68	29	5	5	58	1.45
41500677--41500722	24	1.9	24	90	0	74	26	10	19	43	1.84
41504237--41504272	18	1.9	19	88	5	56	72	0	0	27	0.85
41504252--41504281	14	2.1	15	93	6	53	73	0	0	26	0.84
41504233--41504294	25	2.4	25	84	10	72	64	1	0	33	1.03
41504235--41504275	19	2.1	20	86	4	57	70	0	0	29	0.87
41505249--41505298	25	2.0	25	96	0	91	22	16	0	62	1.33
41507549--41507623	20	3.7	19	76	13	60	70	1	22	5	1.15
41514789--41514835	24	2.0	24	84	16	62	51	17	0	31	1.46
41516729--41516765	16	2.3	16	90	0	56	16	24	0	59	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41522176--41522208	2	16.5	2	93	0	57	51	3	0	45	1.16
41527413--41527966	275	2.0	276	99	0	1101	32	14	21	31	1.93
41528048--41528267	106	2.1	106	93	0	370	31	17	17	32	1.94
41528476--41528536	30	2.0	30	84	6	79	65	9	6	18	1.43
41528641--41528684	19	2.4	19	88	3	63	70	0	6	22	1.11
41528741--41528769	14	2.0	15	93	6	51	68	6	0	24	1.13
41532852--41532877	2	13.0	2	100	0	52	50	0	0	50	1.00
41546581--41546606	2	13.0	2	100	0	52	50	0	0	50	1.00
41548829--41549032	102	2.0	102	95	1	365	25	19	31	23	1.98
41550220--41550247	13	2.2	13	100	0	56	53	0	0	46	1.00
41551639--41551684	20	2.3	20	92	0	74	52	15	4	28	1.61
41551647--41551690	20	2.2	20	83	0	52	52	9	4	34	1.54
41555346--41555376	7	4.4	7	91	0	53	25	12	16	45	1.83
41555650--41555714	22	3.0	22	75	4	71	18	20	15	46	1.84
41556339--41556372	7	4.7	7	85	7	50	41	2	0	55	1.15
41568077--41568122	21	2.1	22	84	11	60	65	2	2	30	1.16
41569861--41569900	21	1.9	21	94	0	71	40	17	17	25	1.91
41570148--41570203	22	2.5	22	85	5	69	32	16	19	32	1.94
41572837--41572933	25	3.8	25	78	9	99	30	21	27	19	1.98
41573086--41574087	503	2.0	503	99	0	1988	35	19	9	35	1.84
41574459--41574497	18	2.0	20	90	9	64	46	0	0	53	1.00
41574460--41574502	15	2.8	16	86	10	63	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41576413--41576449	20	2.0	19	85	15	51	37	8	0	54	1.30
41578034--41578155	40	3.0	40	100	0	244	27	2	22	48	1.63
41578052--41578168	21	5.8	21	62	9	64	28	2	20	48	1.62
41585541--41585685	41	3.5	41	95	0	254	27	20	28	22	1.99
41595000--41595057	25	2.4	24	83	11	73	13	27	25	32	1.94
41595071--41595145	25	3.0	25	77	11	82	21	25	21	32	1.98
41596953--41597068	24	4.8	23	75	8	79	16	31	21	30	1.95
41597024--41597080	25	2.3	24	75	3	60	21	29	21	28	1.98
41597973--41598003	16	1.9	16	93	0	53	32	6	3	58	1.40
41605741--41605806	20	3.4	19	72	8	62	19	16	9	54	1.68
41605761--41605817	19	2.9	19	71	5	60	19	21	7	52	1.69
41605736--41605817	39	2.1	39	97	0	155	20	19	7	52	1.70
41609548--41609577	13	2.3	13	94	0	51	36	63	0	0	0.95
41616252--41616433	43	4.3	43	85	3	242	31	29	18	20	1.96
41616381--41616521	42	3.3	42	81	12	171	34	29	14	21	1.93
41617302--41617371	32	2.2	32	97	2	131	41	14	15	28	1.86
41619466--41619579	57	2.0	58	96	1	212	31	3	18	46	1.66
41619333--41619705	204	1.8	204	96	1	694	30	12	16	40	1.86
41619859--41619999	49	2.9	50	90	2	153	53	10	4	31	1.55
41620009--41620125	41	2.9	41	78	10	139	27	28	22	22	1.99
41620157--41620293	40	3.5	40	81	5	152	18	20	21	39	1.93
41625985--41626043	29	2.0	29	96	0	109	27	5	27	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41628522--41628564	10	4.3	10	78	0	50	44	0	9	46	1.35
41628607--41628633	14	1.9	14	100	0	54	59	7	3	29	1.42
41629996--41630046	20	2.6	20	84	9	61	35	9	19	35	1.85
41639225--41639371	43	3.4	43	80	3	154	27	17	26	29	1.97
41644769--41644811	18	2.5	17	85	7	52	11	37	32	18	1.87
41651020--41651047	10	2.8	10	100	0	56	17	0	0	82	0.68
41652707--41652755	20	2.4	21	80	16	59	46	0	12	40	1.41
41671013--41671107	42	2.3	42	94	0	163	36	10	27	25	1.89
41673707--41673732	9	2.9	9	100	0	52	7	0	0	92	0.39
41673775--41673848	3	24.3	3	83	2	85	31	5	2	60	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210