genome.fa.s3.2.7.7.80.10.50.1000.207.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  207  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68811270--68811340	29	2.4	29	95	2	124	33	15	45	5	1.70
68811416--68811533	44	2.4	50	77	18	149	22	1	32	44	1.63
68811445--68811521	25	3.3	25	70	20	85	16	2	33	46	1.61
68811432--68811545	44	2.6	44	94	1	203	20	1	35	42	1.62
68811470--68811542	19	3.5	19	68	20	56	19	1	36	42	1.60
68811529--68811553	13	1.9	13	100	0	50	16	0	44	40	1.47
68814025--68814070	24	1.9	24	86	0	65	45	0	34	19	1.51
68814592--68814686	48	1.9	47	83	8	118	51	2	4	42	1.33
68814611--68814686	37	2.1	36	83	11	93	52	0	2	44	1.14
68815018--68815048	3	10.7	3	93	6	55	35	0	0	64	0.94
68815793--68816052	43	6.1	43	83	3	247	30	25	18	25	1.98
68815965--68816052	42	2.1	41	81	12	99	35	28	13	22	1.92
68819283--68819319	19	2.0	19	89	5	58	59	5	0	35	1.20
68824967--68824999	15	2.1	16	88	5	50	24	3	24	48	1.65
68825048--68825140	41	2.3	41	84	3	116	24	27	26	20	1.99
68828259--68828285	4	6.8	4	100	0	54	74	0	0	25	0.83
68833257--68833312	29	1.9	29	82	13	71	50	1	1	46	1.22
68835176--68835217	17	2.5	17	96	0	75	47	26	14	11	1.78
68836548--68836605	28	2.1	28	96	3	109	34	0	29	36	1.58
68840339--68840394	15	3.9	15	75	6	55	37	1	0	60	1.07
68840333--68840394	21	2.9	21	80	4	70	33	1	0	64	1.03
68844552--68844583	11	2.8	12	90	9	50	28	31	0	40	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68848782--68848846	32	2.0	32	93	0	112	29	13	23	33	1.93
68851478--68851502	5	5.0	5	100	0	50	20	0	0	80	0.72
68863620--68863652	18	1.9	18	88	11	52	30	0	3	66	1.06
68864123--68864198	29	2.6	29	76	15	77	27	10	5	56	1.54
68864727--68864777	26	1.9	27	84	4	68	54	0	9	35	1.33
68864968--68865007	17	2.3	17	86	4	53	47	5	0	47	1.24
68869927--68870272	110	3.1	113	89	5	533	22	23	23	30	1.99
68870201--68870464	41	6.5	41	92	3	410	18	21	24	35	1.96
68870892--68871042	82	1.9	78	84	4	194	32	1	21	45	1.60
68870892--68871133	91	2.9	79	81	12	205	29	1	23	45	1.62
68870955--68870993	21	1.9	21	89	5	62	20	0	41	38	1.53
68870954--68870987	14	2.4	14	90	9	52	17	0	44	38	1.49
68870975--68871225	91	2.8	91	97	2	474	25	1	25	46	1.62
68871211--68871249	7	5.4	7	81	6	51	12	0	43	43	1.42
68871263--68871301	18	2.2	18	86	4	53	38	7	17	35	1.79
68871756--68871799	9	4.6	9	83	13	52	81	0	6	11	0.86
68871756--68871799	20	2.3	19	84	11	54	81	0	6	11	0.86
68876946--68877156	107	2.0	107	99	0	413	24	23	11	40	1.88
68877907--68878012	51	2.1	51	85	3	142	38	7	20	33	1.81
68877921--68878025	51	2.1	51	81	3	122	40	8	20	31	1.82
68879472--68879522	24	2.1	25	82	13	63	25	0	3	70	1.04
68879479--68879522	22	1.9	24	86	9	65	25	0	4	70	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68879478--68879541	20	3.1	19	79	16	65	23	1	3	71	1.08
68885245--68885277	9	3.7	9	95	0	57	57	6	0	36	1.23
68885266--68885308	17	2.6	16	85	7	59	44	11	0	44	1.40
68886008--68886404	133	3.0	133	97	0	749	38	25	5	30	1.77
68887205--68887266	25	2.5	25	84	2	72	40	19	20	19	1.92
68887286--68887337	25	2.1	25	82	3	61	28	25	23	23	1.99
68892595--68892652	18	3.3	18	77	17	52	58	0	0	41	0.98
68893793--68893925	66	2.0	67	98	1	259	38	7	9	45	1.64
68898094--68898151	18	3.3	18	77	17	52	58	0	0	41	0.98
68900851--68900908	18	3.3	18	77	17	52	58	0	0	41	0.98
68901961--68902001	19	2.1	20	86	4	57	46	0	0	53	1.00
68902682--68902726	23	2.0	22	82	4	54	42	2	2	53	1.25
68913732--68913795	28	2.2	30	80	8	78	51	3	0	45	1.17
68915288--68915391	31	3.4	31	93	0	181	16	25	40	17	1.90
68925056--68925187	67	2.0	67	90	0	210	25	18	28	27	1.98
68928436--68928481	23	2.0	23	86	0	65	36	4	32	26	1.76
68937576--68937657	40	2.1	39	81	9	94	29	0	9	60	1.28
68946411--68946706	71	4.2	71	78	0	304	24	23	19	32	1.98
68946451--68946723	143	1.9	143	84	3	361	24	23	18	33	1.97
68947771--68947815	25	2.0	24	83	16	60	31	2	11	55	1.47
68948424--68948451	3	9.3	3	100	0	56	67	0	0	32	0.91
68948520--68948564	25	2.0	24	83	16	60	31	2	11	55	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68950440--68950511	30	2.4	29	83	4	99	40	1	0	58	1.07
68950464--68950497	17	2.0	17	88	0	50	35	0	0	64	0.94
68950481--68950540	11	5.5	11	78	13	70	38	1	1	58	1.18
68950470--68950539	22	3.3	20	73	11	68	35	1	1	61	1.14
68950432--68950554	21	6.0	20	71	16	67	36	1	2	59	1.20
68950434--68950554	43	2.9	43	83	10	121	36	1	2	59	1.21
68956960--68956987	8	3.5	8	100	0	56	57	0	10	32	1.33
68957270--68957583	113	2.8	113	81	4	332	26	23	20	29	1.99
68957638--68958434	259	3.0	267	91	3	1326	32	18	18	29	1.96
68958352--68958517	84	2.0	84	80	2	190	34	21	18	25	1.96
68959028--68959080	22	2.5	22	93	3	90	30	3	28	37	1.75
68958991--68959067	15	5.3	14	72	7	55	27	1	31	40	1.65
68959617--68959667	24	2.2	23	83	13	68	15	45	3	35	1.65
68960874--68960906	15	2.2	15	94	0	57	39	3	3	54	1.31
68960975--68961036	21	3.0	21	70	23	51	41	4	4	48	1.46
68961051--68961083	15	2.2	15	94	0	57	39	3	3	54	1.31
68960808--68962337	177	8.6	177	99	0	3024	41	5	5	48	1.48
68961152--68961213	21	3.0	21	70	23	51	41	4	4	48	1.46
68961228--68961260	15	2.2	15	94	0	57	39	3	3	54	1.31
68961329--68961390	21	3.0	21	70	23	51	41	4	4	48	1.46
68961405--68961437	15	2.2	15	94	0	57	39	3	3	54	1.31
68961506--68961567	21	3.0	21	70	23	51	41	4	4	48	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68961582--68961614	15	2.2	15	94	0	57	39	3	3	54	1.31
68961759--68961791	15	2.2	15	94	0	57	39	3	3	54	1.31
68961936--68961968	15	2.2	15	94	0	57	39	3	3	54	1.31
68962113--68962145	15	2.2	15	94	0	57	39	3	3	54	1.31
68962290--68962322	15	2.2	15	94	0	57	39	3	3	54	1.31
68966957--68967004	21	2.3	21	88	0	69	33	20	43	2	1.64
68967426--68967518	42	2.2	43	92	1	152	26	22	23	26	2.00
68967488--68967584	49	2.0	48	84	13	128	27	24	19	27	1.99
68967537--68967673	43	3.2	42	85	4	184	25	21	23	29	1.99
68967440--68967673	91	2.7	85	78	15	217	26	23	22	27	1.99
68968165--68968194	10	2.9	10	95	5	51	40	0	0	60	0.97
68969632--68969700	28	2.3	29	82	7	77	65	0	1	33	1.02
68970571--68970596	2	13.0	2	100	0	52	50	0	0	50	1.00
68976432--68976472	6	6.8	6	94	0	55	4	12	65	17	1.42
68976709--68976751	21	2.0	21	100	0	86	44	13	9	32	1.76
68977155--68977185	12	2.5	13	94	5	55	35	16	9	38	1.81
68980681--68980825	63	2.3	63	79	2	139	28	4	31	35	1.78
68983919--68984071	50	3.1	50	65	11	145	26	24	18	31	1.97
68983843--68984116	96	2.8	96	89	2	395	25	24	21	29	1.99
68993389--68993428	20	2.0	20	95	0	71	30	12	25	32	1.92
68997159--68997194	2	18.0	2	88	0	54	47	5	0	47	1.25
68997754--68997855	53	1.9	53	100	0	204	26	38	18	16	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68999359--68999388	15	1.9	16	93	6	53	66	0	13	20	1.24
68999410--68999457	7	6.9	7	80	0	60	54	0	14	31	1.41
68999412--68999476	28	2.3	28	81	0	76	47	0	18	33	1.49
69007493--69007535	16	2.6	17	83	16	56	53	2	4	39	1.34
69009269--69009323	17	3.3	17	71	19	53	16	5	9	69	1.34
69021226--69021828	44	13.8	44	70	12	202	28	19	23	28	1.99
69021140--69021779	217	3.0	217	92	2	1004	27	20	23	28	1.99
69022443--69022473	3	10.7	3	93	6	55	29	0	0	70	0.87
69039399--69039433	16	2.2	16	89	0	52	25	17	5	51	1.67
69040096--69040145	22	2.2	24	79	13	61	54	2	4	40	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210