Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  112  of  210  ( 25174 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37712394--37712456
25
2.5
24
80
10
63
60
1
3
34
1.22
37717780--37717845
31
2.1
31
83
5
80
56
9
10
24
1.62
37720028--37720072
13
3.5
14
80
17
53
26
0
0
73
0.84
37720713--37721096
191
2.0
191
99
0
759
38
16
13
31
1.87
37722358--37722401
13
3.3
14
84
9
56
50
0
0
50
1.00
37722360--37722399
14
2.8
16
78
21
52
47
0
0
52
1.00
37722478--37722544
13
4.8
13
73
22
64
38
0
0
61
0.96
37722474--37722569
44
2.2
45
92
1
158
43
1
0
55
1.06
37722474--37722540
18
3.3
18
68
28
53
41
0
0
58
0.98
37722478--37722554
8
10.4
8
68
28
55
40
0
0
59
0.97
37723536--37723595
9
6.6
9
74
11
59
58
0
5
36
1.20
37728227--37728289
26
2.4
26
71
10
65
38
22
3
36
1.70
37728858--37728907
21
2.4
21
79
0
55
54
0
2
44
1.11
37731394--37731470
22
3.5
22
80
18
88
24
28
1
45
1.61
37731394--37731468
34
2.2
32
81
9
87
24
29
1
45
1.61
37731394--37731470
11
6.9
11
73
19
63
24
28
1
45
1.61
37732670--37732695
7
3.7
7
100
0
52
26
0
15
57
1.38
37733345--37733384
18
2.2
18
86
0
53
17
30
7
45
1.76
37733640--37733688
21
2.3
21
85
0
71
30
36
28
4
1.76
37733855--37734986
23
51.3
22
76
8
975
47
25
0
26
1.55
37733855--37735025
45
26.6
44
75
10
800
47
25
0
26
1.56
37734044--37734205
81
2.0
79
91
2
261
48
26
0
24
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37733962--37734995
289
3.6
287
85
8
1194
47
25
0
26
1.56
37733855--37735025
68
17.7
66
82
6
927
47
25
0
26
1.56
37738188--37738565
125
3.0
125
90
0
576
30
22
15
30
1.95
37741658--37741692
3
11.7
3
93
0
61
28
2
0
68
1.04
37743485--37743536
23
2.3
23
89
0
77
30
17
26
25
1.97
37744632--37744656
6
4.2
6
100
0
50
52
0
0
48
1.00
37745643--37745672
5
6.0
5
100
0
60
0
20
60
20
1.37
37745687--37745750
27
2.4
28
81
7
78
31
23
25
20
1.98
37745886--37745918
3
11.3
3
93
6
59
66
0
33
0
0.92
37746043--37746083
19
2.2
19
100
0
82
31
0
14
53
1.41
37751715--37751797
27
3.1
27
85
3
105
25
36
20
18
1.95
37767739--37767781
21
2.0
21
82
8
52
27
4
9
58
1.49
37769619--37769673
27
2.0
27
82
6
67
41
3
12
41
1.60
37779462--37779530
21
3.2
22
85
6
70
56
5
1
36
1.32
37779474--37779530
21
2.7
21
94
0
96
52
5
0
42
1.24
37779549--37779620
9
7.3
10
71
14
60
62
1
4
31
1.23
37781096--37781161
25
2.7
25
76
2
62
18
28
18
34
1.94
37786484--37786680
103
1.9
103
85
6
274
37
16
10
35
1.84
37795179--37795321
25
5.7
25
78
4
137
16
27
22
34
1.95
37795179--37795321
50
2.9
50
81
8
159
16
27
22
34
1.95
37795238--37795357
50
2.4
50
82
8
129
20
28
19
32
1.96
37795312--37795378
25
2.6
26
76
9
66
26
26
14
31
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37803160--37803217
28
2.1
28
100
0
116
43
10
20
25
1.84
37813925--37814087
81
2.0
82
98
1
319
39
10
8
41
1.70
37821916--37821964
20
2.5
19
78
12
55
36
0
0
63
0.95
37838567--37838619
27
1.9
27
84
3
70
45
16
9
28
1.79
37844252--37844355
55
1.9
55
88
4
156
41
8
12
37
1.74
37844252--37844370
55
2.2
55
83
4
152
42
8
12
36
1.73
37859041--37859098
10
6.2
9
86
8
64
68
3
1
25
1.14
37859046--37859098
17
2.9
18
80
11
54
69
3
1
24
1.15
37859136--37859192
20
2.8
20
76
10
62
59
1
0
38
1.08
37859041--37859171
9
14.0
9
70
18
54
64
3
3
29
1.26
37859715--37859740
8
3.2
8
100
0
52
26
0
0
73
0.84
37859718--37859779
26
2.3
26
76
10
63
30
3
4
61
1.33
37859760--37859807
21
2.3
21
82
10
55
37
2
4
56
1.30
37859789--37859825
19
2.0
19
89
5
58
29
0
2
67
1.04
37859718--37859920
9
22.2
9
65
19
66
30
2
3
63
1.26
37859892--37859931
19
2.1
19
85
4
53
27
5
7
60
1.45
37860318--37860352
3
11.7
3
100
0
70
0
31
0
68
0.90
37860829--37860876
24
1.9
26
87
8
73
31
2
0
66
1.03
37863619--37863653
18
1.9
18
88
0
52
74
5
0
20
1.02
37863613--37863661
20
2.5
19
80
12
55
73
4
0
22
1.00
37863953--37863993
3
13.3
3
94
5
73
65
0
0
34
0.93
37865188--37865325
36
4.0
36
77
11
144
29
26
14
29
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37865198--37865331
66
2.0
66
88
0
196
29
25
14
29
1.95
37874287--37874431
42
3.4
42
74
10
116
25
17
26
30
1.98
37874287--37874443
43
3.7
42
72
13
124
25
17
26
29
1.98
37876803--37876842
16
2.5
16
83
0
53
30
20
10
40
1.85
37883190--37883272
31
2.7
31
88
3
114
30
9
13
46
1.75
37885679--37885761
11
7.6
11
69
20
59
60
0
2
37
1.10
37885679--37885766
31
2.7
31
89
8
124
62
0
2
35
1.08
37891396--37891438
22
2.0
22
95
0
77
46
16
9
27
1.77
37894168--37894212
22
2.0
22
83
8
56
37
8
4
48
1.55
37899738--37899775
3
12.7
3
100
0
76
65
0
0
34
0.93
37900529--37900562
16
2.2
16
89
5
52
82
0
2
14
0.79
37909789--37909870
43
1.9
43
85
9
114
32
25
21
19
1.97
37915551--37915647
48
2.0
48
97
0
185
24
18
37
19
1.94
37918125--37918149
3
8.3
3
100
0
50
0
32
0
68
0.90
37918448--37918487
21
1.9
21
85
10
55
47
2
0
50
1.14
37918599--37918641
22
2.0
22
90
0
68
11
20
25
41
1.86
37918905--37919031
43
2.9
44
78
6
161
28
31
19
20
1.97
37921610--37921648
10
3.7
10
86
6
51
43
12
0
43
1.42
37921608--37921648
12
3.6
12
80
12
59
43
12
0
43
1.41
37921612--37921662
22
2.3
22
83
6
59
47
11
1
39
1.52
37923144--37923446
41
7.4
41
73
10
219
37
23
23
16
1.93
37923187--37923447
82
3.2
82
90
1
409
38
22
23
15
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37924417--37924493
34
2.3
34
100
0
154
28
23
20
27
1.99
37924482--37924732
43
5.9
42
80
7
249
26
31
19
21
1.98
37924503--37924708
85
2.4
85
83
7
247
27
33
18
19
1.96
37926295--37926538
36
6.2
36
77
17
218
36
11
21
29
1.89
37926295--37926521
82
2.8
82
93
0
373
37
11
22
29
1.88
37941593--37941624
12
2.7
12
95
0
55
68
15
9
6
1.36
37943056--37943277
84
2.7
83
76
10
204
35
19
14
30
1.92
37942530--37943923
451
3.1
451
93
1
2330
33
19
15
31
1.93
37943998--37944757
291
2.6
289
91
4
1195
43
25
1
29
1.65
37945126--37945288
41
3.9
42
81
7
165
31
26
20
20
1.98
37945320--37945432
40
2.8
38
79
10
102
21
22
19
37
1.95
37949012--37949155
55
2.6
55
93
0
243
50
15
9
25
1.74
37954901--37955583
50
13.7
50
67
5
333
22
25
22
28
1.99
37954915--37955657
100
7.4
99
89
1
1072
22
25
22
28
1.99
37964944--37964989
20
2.2
22
84
7
60
10
21
6
60
1.52
37969454--37969597
55
2.6
55
93
0
243
50
15
9
25
1.74
37978874--37978917
15
2.9
14
83
12
52
81
4
6
6
0.97
37979349--37979406
11
5.2
11
73
23
50
77
1
18
1
0.94
37979352--37979401
17
2.9
17
88
5
75
82
2
16
0
0.77
37979349--37979401
5
10.0
5
78
15
54
81
1
16
0
0.79
37980301--37980346
24
1.9
24
86
0
65
39
13
17
30
1.87
37980684--37981086
44
9.2
43
74
3
320
29
15
25
29
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37980684--37981058
132
2.8
132
86
1
529
29
14
25
30
1.95
37981162--37981502
50
6.9
50
69
7
210
30
21
21
26
1.98
37981145--37981500
100
3.6
100
86
1
475
29
21
23
25
1.99
37981558--37982275
82
8.7
82
97
0
1287
30
26
19
23
1.98
37982264--37982424
44
3.7
43
72
9
141
28
24
21
24
1.99
37990110--37990138
6
4.8
6
100
0
58
31
0
0
68
0.89
38015041--38015200
71
2.4
67
82
10
166
28
6
6
58
1.47
38015074--38015217
71
2.0
71
98
0
279
25
4
5
63
1.36
38015163--38015247
40
2.1
42
82
10
106
32
1
4
61
1.24
38021296--38021352
28
2.0
28
100
0
114
40
14
10
35
1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210