genome.fa.s3.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  158  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52874772--52874832	29	2.1	28	82	8	70	60	6	6	26	1.46
52876172--52876200	14	2.1	14	93	6	51	0	13	0	86	0.58
52877877--52877921	22	2.0	22	82	8	54	33	4	2	60	1.29
52885725--52886164	41	10.8	41	81	2	465	22	18	28	30	1.97
52885725--52886164	81	5.4	82	80	2	465	22	18	28	30	1.97
52886421--52886459	14	2.8	14	84	0	51	23	0	28	48	1.51
52886497--52886544	14	3.4	14	82	2	51	14	0	43	41	1.45
52886512--52886560	22	2.3	22	89	3	73	16	0	44	38	1.48
52886930--52886968	14	2.8	14	81	14	53	25	2	41	30	1.69
52887928--52887970	21	2.0	21	90	4	68	32	46	0	20	1.51
52889759--52889818	30	2.0	31	86	3	86	40	0	40	20	1.52
52889930--52889987	30	2.0	30	86	3	82	44	1	34	18	1.60
52890029--52890065	9	4.1	9	92	0	65	29	10	13	45	1.77
52890118--52890148	9	3.4	9	90	0	53	38	22	12	25	1.90
52892844--52893070	43	5.3	43	81	3	235	24	17	25	32	1.96
52892844--52893070	85	2.7	86	81	2	260	24	17	25	32	1.96
52893532--52893894	180	2.0	180	90	0	564	23	20	30	25	1.99
52893955--52894006	25	2.0	26	82	10	63	40	3	5	50	1.45
52899460--52899498	20	2.0	19	85	14	53	66	10	0	23	1.22
52899479--52899549	21	3.2	22	84	8	90	53	18	0	28	1.45
52899453--52899551	21	4.6	21	74	19	80	56	17	0	26	1.41
52899762--52900032	134	2.0	135	99	0	535	36	20	14	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52900876--52900918	22	2.0	22	85	0	59	69	6	9	13	1.35
52901464--52901524	28	2.2	28	85	2	79	21	6	4	67	1.33
52903549--52903590	21	2.0	21	86	9	59	40	2	19	38	1.64
52904059--52904165	49	2.2	49	81	9	130	18	26	21	33	1.96
52904196--52904243	25	1.9	25	82	0	60	25	18	14	41	1.88
52905874--52905900	12	2.2	12	100	0	54	18	7	7	66	1.40
52912489--52912645	81	1.9	81	98	0	305	29	20	23	26	1.99
52919948--52920009	26	2.4	26	94	0	106	35	12	24	27	1.92
52920045--52920094	21	2.3	21	80	10	57	48	16	16	20	1.82
52934977--52935093	61	2.0	58	88	5	171	41	2	4	52	1.35
52953331--52953389	30	2.0	30	96	0	109	49	15	8	27	1.73
52958331--52958515	92	2.0	93	98	1	363	52	4	8	34	1.52
52962053--52962097	23	2.0	22	84	16	58	46	17	0	35	1.49
52969473--52969502	8	3.8	8	100	0	60	13	0	0	86	0.57
52969483--52969565	39	2.2	39	97	2	159	30	2	0	67	1.03
52969735--52969764	8	3.8	8	100	0	60	13	0	0	86	0.57
52969745--52969853	39	2.8	39	93	4	177	29	1	0	67	1.07
52973717--52973770	26	2.1	26	89	0	81	22	27	24	25	2.00
52979528--52979569	22	1.9	22	85	0	57	45	16	19	19	1.86
52979579--52979765	32	5.8	32	87	2	268	38	19	19	22	1.93
52979812--52979878	27	2.5	26	88	9	100	32	23	22	20	1.98
52979940--52980022	24	3.5	23	83	4	103	46	24	7	21	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52980066--52980126	27	2.3	27	85	5	79	21	21	21	36	1.96
52987564--52987594	15	2.1	15	94	5	55	87	0	12	0	0.55
52988884--52988948	31	2.1	31	91	0	103	30	13	15	40	1.86
52991003--52991044	21	2.0	21	95	0	75	26	9	21	42	1.83
52994016--52994096	18	4.8	17	75	15	78	38	2	1	58	1.20
52994050--52994111	32	1.9	32	93	0	106	38	1	1	58	1.18
52997915--52998171	128	2.0	129	98	0	498	43	7	23	26	1.79
52998163--52998199	16	2.3	16	95	0	65	51	2	5	40	1.39
52999111--52999216	42	2.5	42	83	4	117	21	19	16	42	1.89
52999124--52999216	42	2.2	42	86	0	132	20	20	17	41	1.90
52999181--52999237	21	2.8	20	73	7	60	17	24	17	40	1.91
52999124--52999237	42	2.7	42	83	2	122	20	21	16	42	1.90
53003466--53003560	44	2.2	44	96	0	172	41	12	22	24	1.88
53003468--53003572	44	2.4	44	90	0	138	39	13	23	23	1.90
53003581--53003657	40	1.9	40	100	0	154	22	18	37	22	1.94
53003619--53003754	50	2.7	49	85	8	168	28	19	33	18	1.95
53011508--53011534	2	13.5	2	100	0	54	48	51	0	0	1.00
53011534--53011578	2	23.0	2	90	4	74	0	48	0	51	1.00
53022716--53022794	23	3.4	23	85	0	95	13	12	26	46	1.79
53031519--53031650	48	2.7	49	87	6	173	25	21	32	20	1.97
53038671--53038867	48	4.1	48	84	2	252	27	21	28	21	1.99
53048197--53048227	9	3.6	9	95	4	55	80	0	19	0	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53050625--53050700	23	3.3	23	86	0	116	15	17	21	46	1.84
53050619--53050708	46	2.0	46	90	0	144	15	16	23	44	1.86
53050928--53050985	28	2.1	28	100	0	116	36	10	17	36	1.84
53052344--53052382	6	6.3	6	82	5	51	15	20	2	61	1.45
53056637--53056682	20	2.3	20	88	0	65	15	30	19	34	1.93
53058377--53058428	23	2.3	23	93	0	86	40	23	17	19	1.91
53058356--53058449	23	4.1	23	78	0	71	41	23	14	20	1.89
53069031--53069130	39	2.6	38	85	4	130	51	8	3	38	1.47
53081554--53081586	17	1.9	17	93	0	57	18	0	9	72	1.10
53082192--53082228	14	2.6	14	100	0	74	75	5	8	10	1.17
53084412--53084438	6	4.5	6	100	0	54	0	70	0	29	0.88
53101962--53102043	29	2.9	29	81	13	82	75	9	8	6	1.18
53101960--53102050	35	2.6	33	81	11	94	74	9	8	6	1.21
53102898--53102952	7	8.0	7	84	11	78	70	0	14	14	1.16
53104162--53104590	87	4.9	87	89	0	651	29	24	22	24	1.99
53104391--53104528	44	3.2	43	66	13	102	26	23	21	28	1.99
53121641--53121677	9	4.1	9	85	0	56	48	10	10	29	1.72
53121729--53121786	29	2.0	29	89	3	89	20	44	0	34	1.52
53121966--53122009	23	1.9	23	95	0	79	36	22	0	40	1.54
53121996--53122035	20	2.0	21	90	5	64	20	25	0	55	1.44
53124468--53124600	27	4.9	27	86	1	178	18	17	21	42	1.89
53128751--53128796	3	15.7	3	95	4	85	32	32	0	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53141060--53141116	27	2.1	27	100	0	114	42	3	17	36	1.67
53149048--53149089	20	2.1	20	82	8	50	38	16	4	40	1.70
53149569--53149620	24	2.2	24	89	0	77	26	28	0	44	1.55
53155782--53155970	99	1.9	102	85	6	267	24	23	31	20	1.98
53155782--53155976	50	3.8	50	87	5	257	25	23	30	20	1.98
53155832--53156066	50	4.8	49	82	3	195	28	24	26	21	1.99
53161566--53161633	21	3.2	21	87	0	91	39	19	38	2	1.67
53161835--53161883	20	2.4	20	89	3	80	18	0	20	61	1.35
53162822--53162878	21	2.6	22	80	2	71	28	28	21	22	1.99
53164260--53164330	25	2.8	25	91	0	106	33	22	21	22	1.97
53175937--53175974	18	2.1	18	95	0	67	63	0	0	36	0.95
53177722--53177768	24	2.0	24	82	0	58	40	8	4	46	1.54
53186264--53186303	19	2.0	20	86	13	57	72	10	2	15	1.21
53186272--53186322	15	3.1	16	81	13	59	76	3	3	15	1.08
53186660--53186703	13	3.4	13	81	6	54	75	0	4	20	0.98
53186660--53186715	17	3.3	17	76	0	58	73	3	3	19	1.13
53188307--53188529	69	3.3	69	85	6	285	33	19	6	40	1.77
53196259--53196297	17	2.4	16	86	4	51	74	0	0	25	0.82
53196792--53197400	77	8.0	75	74	13	410	37	10	9	43	1.70
53196862--53196992	67	2.0	67	86	3	183	38	13	6	40	1.72
53199730--53199766	18	2.1	18	94	0	65	29	29	21	18	1.97
53199736--53199776	18	2.2	18	91	4	64	26	29	24	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53200491--53200522	15	2.1	15	100	0	64	62	0	6	31	1.20
53205341--53205458	60	2.0	61	86	5	168	33	6	21	38	1.80
53217086--53217222	68	2.0	68	94	0	238	25	16	22	35	1.94
53221315--53221354	21	1.9	21	85	10	55	25	7	20	47	1.75
53221310--53221360	21	2.4	21	75	21	52	25	5	23	45	1.75
53221570--53221596	2	13.5	2	100	0	54	0	48	0	51	1.00
53222026--53222622	299	2.0	299	97	0	1122	39	19	11	29	1.87
53222631--53222668	6	6.3	6	82	11	51	78	0	2	18	0.86
53222631--53222668	13	3.2	12	85	10	51	78	0	2	18	0.86
53224400--53224441	16	2.6	16	84	0	57	38	4	0	57	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210