genome.fa.s3.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  172  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57079338--57079377	20	2.0	21	90	5	64	37	7	25	30	1.83
57079958--57080062	49	2.1	49	83	0	129	38	20	18	23	1.93
57084823--57084861	10	3.9	10	86	0	60	51	0	20	28	1.48
57084819--57084858	20	2.0	20	100	0	80	50	0	20	30	1.49
57095141--57095170	16	1.9	15	93	6	51	30	26	13	30	1.94
57098224--57098267	16	2.7	17	83	16	58	47	0	2	50	1.13
57115060--57115088	12	2.3	13	94	5	51	65	6	6	20	1.40
57118655--57118742	34	2.6	34	80	3	88	27	21	19	31	1.97
57121298--57121341	18	2.4	18	80	0	52	4	15	4	75	1.14
57123530--57123576	24	2.1	21	84	11	58	31	4	40	23	1.74
57123853--57123967	40	2.9	40	88	2	160	8	34	4	52	1.52
57124611--57124725	54	2.1	54	88	4	178	38	19	14	27	1.91
57124601--57124725	27	4.6	27	78	0	124	40	19	13	27	1.89
57124856--57124921	27	2.5	26	81	15	75	16	19	24	39	1.92
57130895--57131114	27	8.2	27	82	7	234	45	18	15	20	1.85
57130895--57131114	80	2.7	81	88	2	318	45	18	15	20	1.85
57131309--57131379	26	2.7	26	82	0	88	19	21	18	40	1.91
57131517--57131636	30	4.0	30	88	4	170	24	27	20	27	1.99
57133231--57133260	14	2.1	14	93	0	51	73	3	23	0	0.98
57136547--57136593	21	2.2	21	84	3	58	36	25	14	23	1.93
57138214--57138272	30	2.0	30	100	0	118	37	16	27	18	1.93
57151285--57151575	145	2.0	145	100	0	582	34	15	9	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57152927--57152958	14	2.4	13	90	10	55	75	0	0	25	0.81
57152128--57153416	647	2.0	641	90	3	2009	31	17	8	42	1.79
57155049--57155312	27	9.8	27	81	4	246	40	19	15	25	1.90
57155073--57155271	107	1.9	107	81	4	249	39	18	17	25	1.91
57155115--57155356	134	1.8	133	80	8	294	42	19	16	22	1.89
57155049--57155390	161	2.1	160	79	8	356	41	19	15	23	1.89
57155336--57155514	27	6.7	27	82	1	180	39	22	17	19	1.92
57155320--57155514	53	3.6	54	77	3	198	42	21	16	19	1.89
57155275--57155514	107	2.2	107	84	4	306	42	21	15	20	1.88
57155305--57155522	80	2.7	80	84	3	242	42	20	16	20	1.89
57155746--57155799	26	2.1	26	85	0	72	12	14	31	40	1.84
57155790--57155881	32	2.9	32	80	6	114	21	20	21	35	1.96
57168547--57168784	50	4.6	54	76	9	171	26	21	28	22	1.99
57191597--57192103	71	7.2	71	82	2	500	33	24	19	23	1.97
57191597--57192043	143	3.2	141	80	6	467	33	23	19	23	1.97
57191597--57191999	214	1.9	212	84	1	536	33	24	19	23	1.97
57191974--57192350	70	5.4	70	80	6	356	28	25	21	24	1.99
57197665--57197702	10	3.7	10	83	16	51	42	0	0	57	0.98
57201170--57201229	30	2.0	30	83	3	77	26	6	8	58	1.52
57204001--57204100	51	2.0	51	90	4	157	26	28	2	44	1.65
57205219--57205261	18	2.4	18	88	0	59	18	27	9	44	1.80
57206367--57206442	23	3.6	20	80	16	82	42	2	0	55	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57206367--57206425	23	2.7	23	89	5	86	40	3	0	55	1.16
57206828--57206862	17	2.1	17	88	0	52	34	5	20	40	1.76
57218738--57218794	29	2.0	29	92	0	96	35	7	10	47	1.65
57219516--57219771	125	2.0	127	84	1	336	30	20	16	32	1.95
57220525--57220556	2	16.0	2	93	0	55	46	0	0	53	1.00
57223099--57223471	43	8.7	42	76	6	248	26	28	20	24	1.99
57223099--57223471	86	4.4	86	75	7	294	26	28	20	24	1.99
57234128--57234234	7	14.6	7	69	14	56	37	42	0	19	1.58
57234131--57234233	16	6.4	16	70	19	72	35	42	0	20	1.59
57234156--57234228	30	2.4	29	79	4	83	32	42	1	23	1.63
57234129--57234233	37	2.9	37	77	8	108	37	41	0	20	1.58
57235698--57236057	41	8.8	40	83	6	384	34	24	25	16	1.95
57243266--57243491	88	2.6	87	87	0	290	20	25	15	38	1.91
57243266--57243477	58	3.6	58	83	2	264	19	25	16	38	1.92
57243265--57243491	29	7.8	29	82	3	233	20	25	14	39	1.91
57250999--57251046	20	2.5	18	86	6	60	25	2	2	70	1.09
57254718--57254753	10	3.6	10	92	7	56	52	19	0	27	1.46
57257370--57257474	40	2.5	40	80	14	113	45	11	10	32	1.74
57257394--57257479	40	2.2	40	86	0	127	45	12	9	32	1.74
57264641--57264745	40	2.5	40	80	14	113	45	11	10	32	1.74
57264665--57264750	40	2.2	40	86	0	127	45	12	9	32	1.74
57279391--57279502	40	2.6	44	73	15	117	47	8	11	32	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57282439--57282494	12	4.8	11	77	14	51	5	17	0	76	0.96
57285496--57285542	20	2.4	19	89	3	67	59	19	0	21	1.38
57285496--57285542	9	4.9	9	84	10	58	59	19	0	21	1.38
57285502--57285549	11	4.6	11	82	15	57	58	16	0	25	1.38
57285666--57285751	40	2.2	40	89	0	136	45	12	10	31	1.76
57286336--57286428	30	3.1	30	87	0	132	38	20	17	23	1.93
57286307--57286428	60	2.0	60	82	0	145	40	19	16	23	1.91
57291726--57291760	3	11.7	3	100	0	70	0	34	0	65	0.93
57295299--57295523	41	5.5	41	77	5	213	22	28	15	34	1.94
57295302--57295523	82	2.7	81	80	6	243	22	27	15	34	1.94
57301231--57301436	41	5.0	41	82	5	211	18	25	16	39	1.91
57301242--57301456	82	2.6	82	80	4	236	19	27	14	38	1.91
57301266--57301456	41	4.7	41	82	2	195	20	28	14	36	1.92
57305206--57305265	29	2.1	29	87	0	84	36	15	16	31	1.90
57307269--57307300	13	2.5	13	94	0	55	65	6	9	18	1.42
57308331--57308388	30	2.0	29	80	12	66	60	1	22	15	1.44
57310782--57310823	16	2.6	16	88	0	57	30	11	28	28	1.92
57318743--57318776	18	1.9	18	88	5	52	11	38	29	20	1.88
57325801--57325832	16	2.0	16	93	0	55	25	15	0	59	1.36
57326060--57326250	51	3.8	51	74	11	187	32	27	15	24	1.95
57326053--57326242	102	1.9	102	83	7	244	33	26	15	24	1.95
57332173--57332240	11	6.2	11	81	11	77	23	32	1	42	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57332176--57332240	33	2.0	33	88	11	98	24	30	1	43	1.64
57332427--57332457	15	2.0	16	93	6	55	25	3	6	64	1.33
57337766--57338179	126	3.3	126	94	0	711	27	21	19	31	1.97
57338215--57338494	96	2.9	94	81	6	305	41	18	3	36	1.68
57339655--57339712	26	2.6	20	75	21	53	17	8	18	55	1.67
57347974--57348498	107	4.9	106	92	1	838	31	17	17	33	1.93
57347974--57348504	106	5.0	105	92	1	837	31	17	17	33	1.93
57347974--57348504	213	2.5	211	91	2	841	31	17	17	33	1.93
57349870--57350057	51	3.7	49	83	4	216	25	15	28	30	1.96
57368401--57368440	21	1.9	21	85	10	55	47	5	7	40	1.54
57369209--57369250	22	1.9	22	90	0	66	69	2	0	28	1.01
57373516--57373558	23	1.9	22	81	13	52	27	18	4	48	1.68
57374875--57374946	32	2.3	32	87	2	101	25	12	30	31	1.92
57379155--57379197	16	2.6	16	81	7	50	58	6	11	23	1.57
57381321--57381404	36	2.4	34	79	15	84	67	2	22	7	1.26
57384970--57385014	19	2.2	20	92	7	74	73	4	4	17	1.17
57384970--57385027	19	2.9	19	85	10	55	70	5	6	17	1.28
57395192--57395224	3	11.0	3	100	0	66	33	0	0	66	0.92
57401328--57401361	6	5.7	6	90	10	52	70	14	2	11	1.27
57401391--57401446	23	2.7	20	76	13	58	73	0	23	3	0.99
57403676--57404494	44	18.7	43	72	9	371	27	18	26	27	1.98
57403585--57404507	218	4.2	218	92	0	1481	27	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57406038--57406109	3	24.0	3	91	0	117	34	0	1	63	1.03
57414193--57414378	50	3.7	50	86	0	246	25	23	31	19	1.98
57421797--57421856	30	2.0	30	90	0	93	26	16	11	45	1.82
57425745--57426081	49	6.7	50	81	6	326	29	25	15	29	1.96
57425745--57426081	51	6.7	50	82	6	292	29	25	15	29	1.96
57428047--57428114	31	2.2	31	84	5	84	44	7	19	29	1.77
57433712--57433742	2	15.5	2	100	0	62	0	48	0	51	1.00
57436798--57436839	22	1.9	22	90	9	68	71	11	0	16	1.14
57436787--57436834	12	4.2	12	76	10	55	72	14	0	12	1.11
57440216--57440261	21	2.2	21	100	0	92	23	15	23	36	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210