genome.fa.s3.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  13  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4518591--4518661	4	18.0	4	92	2	117	47	23	2	25	1.65
4518768--4518832	4	16.2	4	93	0	112	50	27	0	21	1.49
4518929--4519618	8	86.5	8	92	0	1042	50	25	4	20	1.66
4525103--4525191	27	3.3	27	82	0	106	28	25	8	37	1.86
4527338--4527370	12	2.8	12	100	0	66	0	39	36	24	1.56
4528395--4528499	25	4.2	24	80	6	104	31	17	25	25	1.97
4544606--4544951	29	11.9	29	69	11	199	19	28	16	36	1.93
4544945--4545066	29	4.2	29	91	0	181	25	22	12	39	1.89
4544625--4544978	87	4.1	87	92	0	537	19	27	16	37	1.93
4550230--4550475	29	8.4	29	76	9	155	23	26	12	38	1.90
4550231--4550543	117	2.7	116	81	10	304	23	26	12	37	1.91
4550277--4550574	58	5.1	57	70	15	166	22	25	12	38	1.90
4550245--4550523	87	3.2	87	80	8	246	23	25	12	38	1.89
4550364--4550574	29	7.3	29	77	6	144	22	25	13	38	1.90
4561270--4561302	17	2.0	17	88	5	50	33	0	15	51	1.43
4567154--4567262	41	2.7	41	79	2	112	29	17	24	28	1.97
4576662--4577138	57	8.5	57	78	8	417	34	22	17	25	1.96
4576678--4577138	29	16.4	27	76	10	294	34	23	17	24	1.96
4576751--4577146	83	4.7	83	84	5	442	33	23	17	25	1.96
4577993--4578064	37	1.9	37	88	0	108	18	27	18	36	1.94
4584422--4584479	28	2.1	28	93	0	98	29	25	24	20	1.99
4584586--4584640	26	2.1	26	82	0	65	36	12	21	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4584832--4584965	27	5.0	27	90	0	205	17	18	23	41	1.90
4586957--4587009	19	2.8	18	86	11	63	67	7	3	20	1.31
4607729--4607808	40	2.0	40	85	0	106	35	16	30	18	1.93
4609692--4609785	28	3.4	28	80	2	109	28	23	22	25	1.99
4609877--4609927	26	2.0	26	96	0	93	41	23	19	15	1.90
4610112--4610338	27	8.4	27	80	6	230	22	16	16	44	1.87
4610145--4610338	107	1.8	107	87	3	291	23	14	16	45	1.84
4610320--4610446	53	2.4	54	85	2	168	17	16	24	41	1.89
4610349--4610447	27	3.7	27	90	1	146	15	18	24	42	1.88
4625489--4625519	11	2.8	11	95	0	53	58	9	9	22	1.59
4630066--4630517	44	10.4	44	68	12	188	27	25	18	29	1.98
4630209--4630543	173	1.9	173	86	3	478	27	24	18	29	1.98
4630066--4630483	217	1.9	217	86	3	576	27	24	19	29	1.98
4630533--4630765	128	1.8	129	89	2	371	25	26	17	31	1.97
4639985--4640019	7	5.1	7	89	6	54	14	11	0	74	1.08
4639986--4640016	13	2.4	13	88	0	53	12	9	0	77	0.99
4640866--4640907	22	1.9	22	85	9	59	0	26	0	73	0.83
4645873--4645920	11	4.4	11	81	7	53	54	0	4	41	1.20
4645886--4645924	21	1.9	20	89	5	60	53	0	2	43	1.14
4646002--4646045	18	2.5	17	85	10	54	59	6	2	31	1.36
4650384--4650446	30	2.1	30	87	0	90	26	23	17	31	1.97
4650281--4650439	85	1.9	85	83	0	210	25	28	10	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4650425--4650498	29	2.5	30	91	2	114	16	29	12	41	1.84
4650486--4650556	29	2.4	30	86	6	101	25	25	9	39	1.86
4660227--4660319	41	2.2	43	84	7	120	33	24	17	24	1.96
4664607--4664700	49	1.9	49	86	0	134	27	22	3	46	1.67
4664810--4664854	23	2.0	23	100	0	90	28	17	13	40	1.88
4667229--4667275	14	3.5	14	85	8	71	0	19	0	80	0.70
4667234--4667274	4	10.8	4	84	10	59	0	19	0	80	0.71
4667240--4667274	18	1.9	18	100	0	70	0	20	0	80	0.72
4671219--4671549	27	12.3	27	81	2	319	17	17	21	43	1.88
4676605--4676637	16	2.0	17	88	5	50	18	33	12	36	1.88
4677459--4677667	81	2.6	81	84	1	258	20	16	21	41	1.90
4677457--4677667	27	7.8	27	79	6	212	20	16	21	41	1.90
4682685--4682727	17	2.5	18	77	11	54	16	37	27	18	1.92
4684308--4684410	30	3.5	29	86	5	102	27	24	27	21	1.99
4684335--4684410	30	2.6	29	93	4	127	27	25	27	19	1.99
4684531--4684629	26	3.8	26	75	0	90	41	24	18	16	1.89
4685770--4686205	27	16.3	27	82	3	452	41	18	16	24	1.90
4685770--4686205	107	4.1	108	86	3	533	41	18	16	24	1.90
4686389--4686483	26	3.7	26	79	0	109	16	16	23	43	1.88
4686600--4686706	30	3.7	27	72	12	70	24	25	21	28	1.99
4694336--4694469	40	3.3	41	75	7	130	24	16	25	33	1.96
4695218--4695288	34	2.1	35	84	7	92	22	12	21	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4695278--4695406	69	1.9	69	82	6	163	25	17	17	39	1.91
4712693--4712824	40	3.3	39	84	7	156	22	15	28	32	1.95
4712709--4712866	41	3.9	41	83	7	180	24	15	29	31	1.96
4722681--4722768	24	3.6	24	79	1	95	29	18	25	27	1.98
4725209--4725263	20	2.8	20	74	0	65	40	20	25	14	1.90
4727327--4727366	20	2.0	20	90	4	64	40	12	7	40	1.71
4731912--4731936	10	2.5	10	100	0	50	0	0	16	84	0.63
4734556--4734635	41	1.9	42	85	10	110	72	2	12	12	1.22
4735289--4735344	28	2.3	23	80	20	60	26	23	23	26	2.00
4735448--4735524	26	3.0	26	86	0	100	41	19	19	19	1.91
4735639--4735666	2	14.0	2	100	0	56	50	0	0	50	1.00
4735706--4735764	27	2.2	27	87	0	82	22	16	23	37	1.94
4735716--4735992	27	10.3	27	73	9	165	19	20	19	40	1.92
4735716--4735992	54	5.1	54	75	7	233	19	20	19	40	1.92
4735760--4735956	107	1.8	108	82	5	256	19	21	20	38	1.94
4737579--4737636	28	2.0	29	83	3	73	31	18	22	27	1.97
4737742--4737818	26	3.0	26	82	0	91	40	18	22	19	1.92
4737993--4738108	54	2.1	54	90	3	180	20	18	19	40	1.92
4737994--4738108	27	4.3	27	82	4	135	20	19	20	40	1.91
4739673--4739750	28	2.5	32	74	22	92	32	23	20	24	1.98
4739682--4739742	28	2.2	28	94	2	106	27	24	24	22	2.00
4740107--4740408	27	11.2	27	84	1	338	18	20	21	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4740120--4740400	81	3.5	81	90	0	409	18	20	22	37	1.94
4751248--4751969	383	1.9	383	87	0	1066	31	13	17	36	1.89
4752343--4752382	21	1.9	21	89	0	62	70	10	5	15	1.32
4760064--4760109	22	2.1	22	100	0	92	30	4	15	50	1.63
4766002--4766060	24	2.6	23	86	7	77	55	1	6	35	1.36
4767018--4767046	12	2.3	13	94	5	51	82	0	13	3	0.79
4767019--4767052	12	2.8	12	86	0	50	79	2	11	5	1.02
4768934--4768986	23	2.2	24	83	9	65	50	7	5	35	1.54
4769187--4769405	108	2.0	109	99	0	431	48	9	18	23	1.76
4770184--4770331	51	2.9	51	82	1	170	22	26	27	22	2.00
4773393--4773485	4	23.2	4	97	0	159	24	3	25	46	1.68
4774049--4774086	2	19.5	2	83	5	51	55	0	0	44	0.99
4774270--4774328	25	2.4	23	73	18	57	45	3	6	44	1.47
4774270--4774335	23	2.7	25	81	9	75	42	3	7	46	1.47
4775516--4775574	25	2.4	23	73	18	57	45	3	6	44	1.47
4775516--4775581	23	2.7	25	81	9	75	42	3	7	46	1.47
4779132--4779173	15	2.6	17	81	11	61	66	0	0	33	0.92
4779132--4779200	24	3.0	23	78	8	68	57	1	0	40	1.07
4779132--4779194	22	2.7	23	80	4	65	60	1	0	38	1.07
4781333--4781357	11	2.3	11	100	0	50	40	0	0	60	0.97
4790102--4790137	18	1.9	19	94	5	65	44	0	0	55	0.99
4812194--4812222	3	9.7	3	100	0	58	65	0	34	0	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4818332--4818581	83	3.0	83	100	0	500	28	13	20	37	1.90
4819057--4819115	31	1.9	31	92	0	100	49	6	8	35	1.60
4819141--4819165	13	1.9	13	100	0	50	48	20	0	32	1.50
4819490--4819515	2	13.0	2	100	0	52	50	0	0	50	1.00
4820358--4820458	31	3.3	31	82	0	112	32	13	13	39	1.85
4825073--4825116	21	2.1	21	95	4	81	75	0	0	25	0.81
4830658--4830713	29	1.9	29	85	0	76	37	7	14	41	1.73
4834365--4834584	109	2.0	108	85	6	293	37	15	29	16	1.90
4844213--4844252	11	3.6	11	79	0	53	20	12	10	57	1.63
4844333--4844366	11	3.1	11	95	0	59	67	0	0	32	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210