genome.fa.s3.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  161  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54017166--54017294	35	3.7	35	75	10	111	28	15	15	40	1.88
54018035--54018092	29	2.0	29	89	0	89	39	15	12	32	1.84
54028411--54028490	22	3.6	22	75	0	79	12	2	45	40	1.56
54028411--54028495	11	7.7	11	68	15	59	11	2	44	41	1.54
54032913--54033027	57	2.0	57	80	6	126	22	18	21	37	1.94
54035870--54035906	10	3.5	10	86	13	56	70	0	8	21	1.13
54035863--54035906	22	2.0	22	100	0	88	63	0	9	27	1.24
54036086--54036125	20	2.0	20	100	0	80	5	5	15	75	1.15
54038416--54038449	16	2.2	16	89	5	52	5	44	0	50	1.26
54041306--54041336	15	2.1	15	93	0	53	25	19	32	22	1.97
54044178--54044204	14	1.9	14	100	0	54	44	25	7	22	1.79
54048463--54048565	41	2.4	42	82	4	109	29	26	17	27	1.98
54058901--54059020	40	3.0	40	98	0	231	42	10	7	39	1.68
54070280--54070678	207	1.9	207	95	0	726	30	18	15	35	1.92
54071197--54071236	19	2.1	19	85	0	53	72	12	0	15	1.12
54075657--54075695	20	2.0	20	85	10	53	53	10	25	10	1.66
54085864--54085906	19	2.2	20	84	12	63	32	18	0	48	1.48
54092103--54092155	27	2.0	27	85	7	72	16	18	16	47	1.83
54095735--54095766	12	2.6	13	85	14	50	37	0	6	56	1.25
54108807--54108865	25	2.4	25	85	0	73	27	25	16	30	1.97
54109075--54109116	15	2.8	15	79	10	50	45	7	14	33	1.72
54109058--54109115	31	1.9	30	82	10	73	43	6	15	34	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54117830--54117898	25	2.8	25	82	4	77	27	26	18	27	1.98
54131950--54132013	31	2.1	31	100	0	128	37	31	0	31	1.58
54132530--54132567	18	2.1	18	95	0	67	26	31	13	28	1.93
54143338--54143363	2	13.0	2	100	0	52	50	0	0	50	1.00
54144213--54144279	27	2.5	27	85	0	89	32	19	28	19	1.96
54145526--54145624	45	2.2	45	87	7	139	44	18	17	20	1.87
54145849--54145891	19	2.3	19	91	0	68	46	20	6	25	1.76
54146966--54147009	16	2.6	16	79	10	52	47	4	0	47	1.22
54150139--54150181	22	2.0	22	81	9	52	39	2	4	53	1.34
54150326--54150383	29	2.0	29	96	0	107	46	6	13	32	1.70
54151422--54151516	28	3.2	28	65	21	77	34	7	23	34	1.83
54151407--54151522	60	1.9	60	96	0	214	31	7	22	37	1.83
54151881--54151905	7	3.6	7	100	0	50	24	0	28	48	1.52
54151962--54152215	90	2.8	89	87	2	384	25	7	15	51	1.69
54152327--54152376	19	2.5	20	75	21	50	58	0	4	38	1.17
54154885--54154932	22	2.2	22	88	7	71	22	8	0	68	1.16
54154890--54154926	17	2.2	17	90	0	56	27	5	0	67	1.12
54155037--54155166	5	23.4	5	72	18	71	33	16	0	50	1.51
54155001--54155049	23	2.1	23	81	7	55	24	12	0	63	1.29
54155026--54155166	28	4.8	29	73	16	139	33	16	0	49	1.51
54155037--54155148	33	3.5	32	75	15	115	33	16	0	49	1.52
54155026--54155166	57	2.4	59	84	9	182	33	16	0	49	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54155244--54155298	21	2.7	20	86	11	67	20	10	0	69	1.18
54155243--54155283	16	2.6	16	88	3	57	21	12	0	65	1.25
54155240--54155301	22	3.0	21	86	9	83	20	12	0	66	1.25
54155327--54155366	21	1.9	21	94	0	71	27	7	0	65	1.20
54155763--54155840	11	6.8	11	70	13	50	26	12	1	58	1.42
54155795--54155833	18	2.2	18	90	0	60	28	10	0	61	1.28
54155738--54155840	29	3.6	29	85	3	138	27	12	0	59	1.40
54159123--54159162	20	2.0	20	90	0	62	30	10	10	50	1.69
54159108--54159174	34	1.9	35	90	3	109	34	8	10	46	1.70
54160348--54160375	2	14.0	2	100	0	56	50	0	0	50	1.00
54161512--54161557	24	1.9	24	90	0	74	39	0	28	32	1.57
54169430--54169495	32	2.1	32	97	0	123	36	13	16	33	1.88
54175271--54175312	14	3.1	13	78	21	50	59	4	0	35	1.19
54175279--54175316	16	2.4	16	82	4	51	60	5	0	34	1.19
54175353--54175386	17	2.0	17	100	0	68	35	5	0	58	1.22
54175353--54175388	18	2.1	17	89	5	54	36	5	0	58	1.22
54175917--54175972	20	2.8	20	79	12	62	76	3	17	1	1.01
54180483--54180522	18	2.2	19	86	4	55	27	7	22	42	1.80
54191103--54191384	64	4.4	64	76	7	239	44	17	20	17	1.87
54191103--54191355	128	2.0	128	82	6	316	43	16	21	18	1.87
54191109--54191355	31	7.8	31	74	8	192	43	16	21	18	1.88
54191116--54191384	128	2.1	128	80	5	303	44	17	20	17	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54191373--54191430	28	2.1	28	83	6	73	32	13	36	17	1.89
54196050--54196135	43	2.0	43	88	4	129	26	27	15	30	1.96
54204984--54205128	58	2.6	57	82	6	188	34	24	15	26	1.94
54204984--54205125	29	5.0	29	83	5	159	35	23	15	25	1.94
54204968--54205173	29	7.4	27	75	14	136	35	23	16	23	1.95
54207255--54207297	15	2.9	15	92	0	77	30	0	30	39	1.57
54207253--54207295	22	2.0	22	90	9	70	30	0	27	41	1.56
54210824--54210856	16	2.1	16	88	5	50	42	3	0	54	1.15
54218462--54218496	18	1.9	18	88	0	52	60	11	8	20	1.57
54228950--54228988	17	2.2	18	86	4	53	38	0	20	41	1.53
54231769--54231836	24	2.8	24	90	0	100	20	16	17	45	1.85
54250746--54250779	12	2.8	12	86	0	50	32	0	0	67	0.91
54253121--54253192	27	2.6	27	82	2	81	30	12	25	31	1.92
54253123--54253206	27	3.1	26	77	8	78	29	14	25	30	1.95
54253258--54253479	27	8.2	27	79	5	225	35	12	25	27	1.92
54255453--54255487	18	1.9	18	88	0	52	42	11	17	28	1.83
54269096--54269179	39	2.2	39	91	0	132	35	19	29	15	1.92
54269116--54269177	19	3.2	19	70	4	61	37	19	30	12	1.89
54275585--54275617	11	2.9	12	86	13	52	42	0	6	51	1.26
54280456--54280496	6	6.7	6	83	5	55	19	4	0	75	0.98
54280642--54280671	9	3.3	9	90	0	51	10	3	0	86	0.67
54283417--54283455	14	2.8	13	84	7	51	33	17	7	41	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54283952--54283986	2	18.0	2	94	5	63	48	0	0	51	1.00
54300265--54300298	16	2.1	16	88	0	50	70	0	0	29	0.87
54310078--54310852	386	2.0	385	95	0	1399	30	19	19	30	1.96
54312610--54313419	405	2.0	405	100	0	1620	40	20	18	21	1.92
54319515--54319584	27	2.6	27	86	0	104	28	10	27	34	1.89
54321724--54321754	15	2.0	16	93	6	55	38	3	32	25	1.72
54324879--54324956	37	2.1	37	85	0	102	38	10	12	38	1.78
54326240--54326273	16	2.2	16	94	5	61	17	11	5	64	1.45
54344451--54344475	13	1.9	13	100	0	50	32	8	20	40	1.81
54349257--54349284	6	4.7	6	100	0	56	82	0	0	17	0.68
54355080--54355574	97	5.1	93	83	9	471	29	25	16	28	1.97
54355092--54355599	51	10.4	50	79	11	500	30	25	16	27	1.96
54355082--54355603	244	2.1	241	84	4	683	30	25	15	28	1.96
54363905--54363952	24	2.0	24	83	0	60	8	25	22	43	1.81
54364095--54364141	19	2.5	20	86	6	62	44	8	19	27	1.79
54366354--54366387	16	2.1	16	88	0	50	44	20	14	20	1.87
54368287--54368327	16	2.5	17	96	4	75	26	36	12	24	1.91
54370234--54370366	71	1.9	68	86	6	187	31	17	17	33	1.93
54374302--54374339	19	1.9	19	89	5	58	42	0	0	57	0.98
54374318--54374357	21	1.9	21	84	0	53	42	5	0	52	1.23
54374841--54374884	19	2.3	19	88	0	61	56	27	2	13	1.49
54378618--54378679	19	3.2	19	71	13	63	50	12	16	20	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54382602--54382632	4	7.8	4	100	0	62	48	0	0	51	1.00
54393558--54393598	20	2.0	21	86	9	59	53	21	4	19	1.63
54393823--54393925	34	3.1	34	74	4	84	43	15	8	32	1.77
54393823--54393974	31	4.7	31	74	13	119	42	15	9	32	1.79
54393921--54393976	18	3.4	18	68	27	52	41	17	8	32	1.81
54396044--54396116	38	1.9	38	91	0	119	45	10	9	34	1.72
54416220--54416920	354	2.0	353	97	0	1312	18	17	22	42	1.89
54419699--54419843	71	2.0	71	94	2	256	30	19	20	30	1.97
54423692--54423724	15	2.1	16	88	5	50	60	0	0	39	0.97
54434241--54434320	13	6.2	13	74	0	70	36	5	23	35	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210