genome.fa.s3.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  105  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35498246--35498305	26	2.3	26	77	11	61	51	3	1	43	1.28
35510591--35510666	31	2.6	29	77	12	82	38	10	13	38	1.79
35510591--35510676	30	2.9	30	78	15	88	36	9	12	41	1.75
35511492--35511578	28	3.1	28	85	6	122	18	4	17	59	1.53
35521313--35521379	33	2.0	33	97	0	125	20	32	23	22	1.98
35522618--35522655	13	2.7	14	84	12	51	50	0	5	44	1.24
35523040--35523105	20	3.1	21	77	12	64	59	4	1	34	1.27
35523046--35523108	22	3.0	21	77	15	58	63	4	1	30	1.24
35526967--35527093	31	4.1	31	90	2	184	30	10	14	44	1.79
35526982--35527111	62	2.2	60	84	6	165	30	10	14	44	1.79
35528028--35528058	15	2.1	15	100	0	62	45	0	12	41	1.42
35528031--35528064	15	2.3	15	89	0	50	44	2	17	35	1.64
35530206--35530255	25	2.0	25	84	7	66	58	4	8	30	1.45
35531902--35532671	50	15.5	50	67	3	408	24	25	22	28	1.99
35531850--35532694	100	8.5	100	92	2	1212	24	25	22	28	1.99
35534472--35534592	59	2.1	58	96	1	224	38	8	8	44	1.64
35535687--35535748	19	3.2	19	78	15	65	61	6	4	27	1.41
35537120--35537252	67	2.0	67	96	0	248	27	33	18	21	1.96
35539048--35539280	117	2.0	117	96	0	430	28	18	8	44	1.78
35548328--35548356	14	2.1	14	100	0	58	41	20	0	37	1.53
35553026--35553252	110	2.0	111	98	1	438	43	6	6	44	1.55
35554154--35554204	23	2.2	23	82	0	57	31	0	3	64	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35556166--35556200	14	2.6	13	86	8	52	40	0	8	51	1.33
35562594--35562641	6	7.8	6	80	13	53	81	0	16	2	0.79
35562595--35562641	13	3.7	13	82	2	60	82	0	14	2	0.75
35562595--35562635	19	2.1	20	90	4	66	85	0	12	2	0.70
35563810--35564866	267	4.0	267	90	1	1557	26	19	26	27	1.99
35565001--35565163	45	3.6	46	85	2	181	30	21	23	24	1.99
35565646--35565674	13	2.1	14	93	6	51	27	37	24	10	1.88
35565897--35565981	40	2.1	40	97	0	161	63	10	4	21	1.44
35566873--35566929	29	2.0	29	89	6	89	29	1	1	66	1.12
35567303--35567335	15	2.2	15	94	0	57	24	0	12	63	1.28
35570745--35570794	26	1.9	26	84	8	66	38	20	22	20	1.94
35577835--35577876	21	2.0	21	85	0	57	42	19	4	33	1.72
35579022--35579123	38	2.6	39	81	3	125	41	22	14	21	1.90
35581015--35581071	17	3.6	16	77	15	57	7	14	1	77	1.06
35581566--35581615	26	1.9	26	100	0	100	14	10	4	72	1.26
35586728--35586854	24	5.3	24	69	22	72	18	23	22	36	1.95
35589839--35589888	24	2.1	24	100	0	100	34	18	4	44	1.68
35592588--35592623	18	2.1	17	89	5	54	80	0	0	19	0.71
35600237--35600813	142	4.0	142	82	3	688	38	21	9	30	1.85
35605908--35605980	37	2.0	37	94	0	128	30	10	24	34	1.90
35609504--35609552	24	2.0	25	88	4	73	44	2	22	30	1.64
35614828--35614894	29	2.4	28	75	12	66	47	5	14	31	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35618519--35618575	21	2.7	21	78	13	64	56	1	8	33	1.41
35619019--35619058	16	2.5	16	79	0	53	45	0	2	52	1.14
35637477--35637516	20	2.0	21	85	5	55	7	0	42	50	1.30
35640466--35640541	9	8.4	9	94	0	107	23	7	25	43	1.80
35642723--35642768	21	2.3	19	82	14	56	26	21	8	43	1.81
35643401--35643466	22	3.3	21	68	24	61	36	7	19	36	1.81
35643393--35643481	38	2.3	38	94	0	151	33	11	16	38	1.85
35643396--35643515	38	3.2	38	87	0	150	33	12	15	38	1.85
35643410--35643530	38	3.2	38	83	0	98	33	11	17	38	1.86
35643688--35643832	44	3.3	44	80	2	150	29	17	14	38	1.89
35643633--35643953	43	7.4	44	76	7	219	26	18	17	37	1.93
35649183--35649241	25	2.4	25	85	2	75	1	15	22	61	1.43
35650785--35650870	18	4.5	19	72	15	61	44	3	0	52	1.18
35650800--35650849	22	2.4	19	78	15	55	40	4	0	56	1.18
35657340--35657374	18	1.9	18	88	11	54	71	2	0	25	1.00
35660557--35660655	43	2.3	41	78	10	108	27	17	27	28	1.97
35662631--35662697	31	2.2	32	78	13	77	53	0	1	44	1.09
35671831--35671867	5	7.4	5	100	0	74	18	0	0	81	0.70
35671898--35671950	27	2.0	27	100	0	106	26	20	15	37	1.92
35675411--35675474	29	2.2	29	91	2	103	31	0	0	68	0.90
35694471--35694532	28	2.3	27	82	2	70	45	8	11	35	1.70
35695788--35695849	28	2.3	27	82	2	70	45	8	11	35	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35696115--35696148	17	2.0	17	88	0	50	73	2	14	8	1.19
35702844--35703243	42	9.5	42	91	3	567	28	22	24	25	1.99
35703636--35703671	12	3.0	12	91	0	54	2	36	16	44	1.63
35703657--35703725	21	3.3	21	85	4	77	4	36	20	39	1.72
35704357--35704392	18	2.0	18	89	10	56	69	5	0	25	1.10
35704361--35704400	18	2.2	19	86	4	55	70	5	0	25	1.08
35704498--35705154	113	5.8	112	78	7	554	26	24	18	30	1.98
35704498--35705173	114	5.9	113	78	5	549	26	24	18	30	1.98
35704496--35705146	229	2.8	228	78	4	573	26	24	18	30	1.98
35709118--35709177	21	2.8	22	73	14	61	51	11	15	21	1.74
35724595--35724635	20	2.0	20	95	0	73	43	7	14	34	1.73
35729437--35729508	25	2.9	25	80	0	72	22	23	20	33	1.97
35731061--35731114	26	2.1	26	100	0	108	27	3	18	50	1.64
35743663--35743739	7	10.6	7	72	22	52	50	5	1	42	1.32
35743663--35743716	24	2.2	25	87	9	76	51	7	0	40	1.30
35748200--35748235	15	2.5	14	86	8	54	44	8	0	47	1.33
35748787--35748842	23	2.4	23	77	16	62	17	1	1	78	0.92
35748786--35748836	11	4.8	11	76	9	52	19	1	1	76	0.98
35748798--35748845	20	2.4	19	83	10	60	20	0	2	77	0.88
35750005--35750090	4	21.5	4	78	19	83	75	0	3	20	0.95
35749997--35750090	30	3.1	30	82	13	113	74	0	4	21	0.99
35753211--35753742	270	2.0	270	92	0	893	32	19	19	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35754263--35754320	15	4.1	14	78	10	55	46	12	0	41	1.41
35754923--35754997	34	2.2	34	87	0	105	16	24	33	26	1.95
35756479--35756617	25	5.6	24	69	15	86	20	23	19	36	1.95
35756609--35756673	25	2.6	25	80	0	67	24	21	16	36	1.94
35767565--35767871	75	4.1	75	93	2	496	33	28	15	22	1.95
35767668--35767863	33	5.4	33	72	18	167	33	27	17	21	1.96
35767565--35767871	149	2.1	150	91	3	496	33	28	15	22	1.95
35767847--35767899	26	2.0	27	92	7	90	24	32	24	18	1.97
35772136--35772183	24	2.0	24	95	0	87	60	0	22	16	1.36
35777717--35778080	184	1.9	188	80	4	423	40	13	18	27	1.88
35789245--35789358	52	2.2	52	82	6	142	28	14	12	43	1.82
35791584--35791740	50	3.1	50	90	0	242	19	30	22	26	1.98
35791558--35791739	100	1.8	100	86	0	265	20	29	23	26	1.99
35792129--35792192	30	2.1	30	85	5	85	32	25	6	35	1.81
35799716--35799904	60	3.1	60	65	15	172	40	11	1	46	1.49
35799681--35799928	121	2.0	121	98	1	480	38	10	2	48	1.51
35799738--35799923	61	3.1	60	63	20	152	39	10	2	47	1.50
35801172--35801210	21	1.9	20	89	5	60	43	25	7	23	1.80
35801482--35801521	21	1.9	21	89	0	62	52	20	0	27	1.46
35811909--35811968	21	2.9	21	97	0	111	33	20	15	31	1.93
35813222--35813430	104	2.0	104	87	1	303	31	11	28	29	1.91
35815402--35815519	24	5.2	24	60	29	62	30	5	10	54	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35815379--35815554	44	4.0	44	100	0	352	31	4	11	52	1.57
35817071--35817116	12	3.7	12	81	18	58	15	0	4	80	0.86
35817064--35817116	26	2.0	26	85	7	72	15	0	3	81	0.83
35822811--35822865	13	4.4	13	72	25	55	58	5	14	21	1.57
35826885--35826915	5	6.2	5	92	0	53	77	3	19	0	0.90
35827925--35827955	5	6.2	5	92	0	53	77	3	19	0	0.90
35835476--35835516	20	2.0	20	85	0	55	46	2	9	41	1.50
35837764--35837804	19	2.3	18	84	16	50	43	2	0	53	1.13
35838422--35838461	20	2.1	19	90	4	62	60	5	0	35	1.19
35844470--35844539	35	2.0	35	91	0	113	27	21	8	42	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210