genome.fa.s3.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  150  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49984600--49984641	20	2.0	22	90	9	70	57	33	2	7	1.39
49985331--49985368	13	2.8	14	85	14	53	34	15	0	50	1.45
49988559--49988598	12	3.3	12	86	6	55	37	22	32	7	1.82
49999358--49999403	19	2.4	19	85	0	56	63	2	4	30	1.26
50000064--50000539	238	2.0	238	99	0	943	32	14	21	31	1.93
50000838--50000950	59	1.9	60	88	1	174	35	33	7	23	1.82
50000919--50001016	48	2.0	48	86	0	133	37	20	7	34	1.80
50002395--50002505	55	2.0	55	98	0	213	38	1	10	48	1.49
50004856--50004933	40	2.0	38	90	5	120	48	3	17	29	1.65
50005448--50005484	18	2.1	18	100	0	74	45	0	32	21	1.52
50010974--50011003	9	3.3	9	90	0	51	43	0	3	53	1.17
50014544--50014589	22	2.1	22	91	0	74	4	63	4	28	1.33
50021528--50021590	33	1.9	33	96	0	117	30	15	34	19	1.93
50023656--50023724	35	2.0	35	100	0	138	33	14	8	43	1.76
50027448--50027636	51	3.7	50	83	2	236	32	28	16	22	1.96
50027448--50027634	101	1.8	101	87	3	268	32	27	16	22	1.96
50030366--50030587	74	3.0	74	99	0	435	43	6	17	32	1.74
50037252--50037293	17	2.3	19	76	12	52	19	0	47	33	1.49
50038081--50038117	18	2.1	18	94	0	65	13	35	40	10	1.80
50043989--50044022	17	1.9	18	88	5	52	20	0	41	38	1.53
50043986--50044028	18	2.4	18	80	7	52	20	0	44	34	1.52
50046401--50046429	12	2.4	12	100	0	58	58	6	0	34	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50052442--50052505	21	3.0	21	93	0	110	12	21	18	46	1.82
50053293--50053342	26	1.9	26	83	0	64	12	34	30	24	1.91
50054056--50054139	29	2.9	29	83	3	98	34	22	17	25	1.96
50054129--50054253	29	4.3	29	93	0	205	35	23	16	24	1.95
50054056--50054242	58	3.2	57	81	3	169	34	22	16	26	1.95
50054238--50054313	26	2.9	26	88	0	107	31	18	22	27	1.97
50054501--50054603	39	2.7	39	98	1	199	17	24	17	40	1.90
50057496--50057530	17	2.1	17	94	5	63	60	14	0	25	1.35
50057958--50058060	29	3.6	29	76	5	82	27	14	20	37	1.91
50058040--50058152	59	1.9	58	82	5	138	29	16	18	35	1.93
50058020--50058228	29	7.2	29	74	6	145	28	15	20	34	1.94
50058066--50058201	58	2.3	58	84	1	164	28	15	19	36	1.93
50059357--50059453	51	1.9	51	82	4	124	27	24	8	39	1.84
50067005--50067053	10	4.8	10	80	5	53	79	2	12	6	0.99
50082018--50082181	54	3.0	54	99	0	319	38	12	24	24	1.90
50093717--50093919	101	2.0	102	97	2	383	20	19	22	37	1.94
50100157--50100210	25	2.1	26	96	3	101	14	14	3	66	1.38
50100255--50100305	3	17.0	3	100	0	102	33	0	0	66	0.92
50103908--50103958	18	2.7	19	73	14	61	37	17	9	35	1.83
50104015--50104055	11	3.7	11	80	0	55	48	14	4	31	1.65
50104105--50104129	2	12.5	2	100	0	50	48	0	0	52	1.00
50104471--50104577	41	2.6	41	80	0	115	28	23	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50129364--50129513	74	2.0	75	98	1	293	46	11	6	36	1.66
50135285--50135326	21	2.0	21	81	9	50	28	14	4	52	1.62
50141182--50141225	24	2.0	21	86	13	61	40	2	4	52	1.34
50145451--50145498	24	2.0	24	83	0	60	27	12	37	22	1.90
50160040--50160265	27	8.4	27	86	6	307	19	18	20	42	1.89
50172980--50173031	25	2.1	25	85	0	68	26	26	15	30	1.96
50172988--50173055	25	2.7	26	84	4	77	26	25	19	29	1.98
50217748--50217812	32	2.0	32	93	0	112	47	12	16	23	1.80
50222519--50222560	18	2.3	18	95	0	75	21	2	11	64	1.38
50223287--50223393	44	2.5	43	79	14	121	25	14	27	33	1.94
50230002--50230026	13	1.9	13	100	0	50	32	4	24	40	1.73
50243855--50243934	16	4.9	16	79	8	81	23	22	8	45	1.80
50244846--50244907	29	2.1	29	82	11	74	56	17	6	19	1.62
50255339--50255401	25	2.5	25	81	0	81	28	25	22	23	1.99
50255325--50255413	25	3.6	25	75	8	76	28	24	23	23	2.00
50257330--50257399	34	2.2	33	90	10	110	40	12	27	20	1.88
50259501--50259549	24	2.1	22	82	17	55	20	10	2	67	1.30
50264851--50264914	27	2.4	27	86	0	83	20	15	32	31	1.94
50267371--50267429	3	19.7	3	96	0	109	33	35	0	30	1.58
50270276--50270318	18	2.3	19	84	4	52	11	11	0	76	1.02
50278647--50278752	50	2.1	50	80	3	115	27	21	30	20	1.98
50279055--50279093	16	2.4	16	82	0	51	66	2	17	12	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50293627--50293736	44	2.5	44	83	2	134	51	1	5	40	1.35
50299083--50299112	11	2.6	11	94	5	51	36	3	0	60	1.14
50300028--50300150	40	3.0	40	89	7	167	36	2	0	60	1.10
50307457--50307562	43	2.5	43	87	6	146	26	17	29	26	1.98
50312029--50312062	17	2.1	17	94	5	61	52	0	17	29	1.45
50312883--50312982	42	2.4	42	94	0	173	35	10	28	27	1.89
50313841--50313919	39	2.0	39	100	0	158	30	7	17	44	1.77
50320793--50320873	40	2.0	41	95	2	146	29	9	17	43	1.81
50327393--50327443	19	2.7	19	81	3	59	43	5	27	23	1.77
50341461--50341577	52	2.2	52	81	3	137	35	25	15	23	1.94
50341461--50341576	26	4.5	26	73	8	119	35	25	15	23	1.94
50355462--50355509	26	1.9	24	84	16	62	2	4	18	75	1.07
50357479--50357580	41	2.5	41	80	0	105	22	21	23	32	1.98
50359602--50359643	19	2.3	19	83	4	50	38	2	9	50	1.48
50370649--50370681	16	2.1	16	94	0	57	27	9	12	51	1.69
50375954--50375982	12	2.3	13	94	5	51	65	6	6	20	1.40
50389396--50389443	20	2.4	21	80	13	57	56	6	25	12	1.59
50396692--50396831	50	2.8	50	80	4	147	28	22	27	21	1.99
50399901--50400045	41	3.5	41	83	0	146	18	24	26	30	1.98
50405066--50405105	17	2.4	17	91	0	62	27	17	25	30	1.97
50408373--50408409	18	2.1	18	100	0	74	51	32	5	10	1.60
50408948--50408997	19	2.5	20	83	3	66	10	28	22	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50408948--50409005	20	2.9	19	85	7	64	10	25	20	43	1.84
50419749--50419814	20	3.3	20	66	8	62	13	37	18	30	1.89
50419733--50419933	40	5.0	40	86	0	267	20	31	15	31	1.94
50423492--50423682	50	3.8	50	79	2	179	28	21	27	21	1.99
50429309--50429363	17	3.2	16	78	19	58	63	3	7	25	1.37
50430807--50430861	3	18.3	3	100	0	110	67	0	0	32	0.91
50431228--50431292	23	2.8	22	73	19	60	46	1	0	52	1.10
50433494--50433537	23	1.9	23	85	0	61	59	0	6	34	1.24
50436216--50436335	55	2.2	55	100	0	240	31	10	3	54	1.52
50439382--50439410	3	9.7	3	100	0	58	31	0	0	68	0.89
50447624--50447675	6	8.7	6	78	0	50	69	11	7	11	1.37
50447620--50447684	24	2.7	23	85	9	76	69	9	9	12	1.37
50448597--50448643	15	3.3	15	77	19	55	70	0	14	14	1.18
50448603--50448649	22	2.2	21	88	7	69	70	0	17	12	1.17
50448603--50448649	7	6.7	7	88	9	69	70	0	17	12	1.17
50448605--50448649	15	3.1	15	90	6	67	73	0	15	11	1.10
50449980--50450764	128	6.0	132	87	4	645	28	19	25	27	1.98
50450300--50451059	128	5.9	128	92	0	1171	29	18	25	26	1.98
50457793--50457921	67	1.9	67	80	3	152	31	18	25	24	1.97
50457901--50458059	27	5.9	27	75	5	124	33	18	28	18	1.95
50460003--50460060	31	1.9	29	83	13	73	37	3	5	53	1.40
50462830--50462920	47	1.9	47	97	0	173	20	23	10	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50475195--50475489	147	2.0	148	99	0	583	34	11	17	35	1.86
50478670--50478730	20	3.0	19	81	18	70	14	6	6	72	1.26
50478670--50478731	21	3.0	20	77	20	65	14	6	6	72	1.25
50479074--50479101	14	2.0	14	100	0	56	35	7	0	57	1.26
50480260--50480315	27	2.2	26	84	12	71	19	19	16	44	1.87
50487260--50487297	20	1.9	20	89	10	60	34	0	5	60	1.19
50491365--50491416	7	7.4	7	79	16	63	13	53	0	32	1.40
50491365--50491416	23	2.5	20	80	17	61	13	53	0	32	1.40
50491365--50491433	28	2.4	30	82	4	79	14	49	1	34	1.53
50505690--50505740	17	2.9	17	72	13	50	13	1	13	70	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210