genome.fa.s3.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  173  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57443607--57443648	12	3.7	12	75	12	52	64	7	2	26	1.32
57444603--57444697	43	2.2	43	84	1	118	49	16	18	14	1.80
57445892--57446011	48	2.6	46	82	5	134	33	19	22	25	1.97
57445938--57446370	44	9.8	43	73	11	218	32	17	21	29	1.96
57446292--57446406	44	2.6	44	83	8	151	32	21	21	24	1.98
57445980--57446415	222	2.0	222	80	8	480	32	17	21	28	1.96
57446343--57447039	143	4.9	142	87	2	907	30	20	22	27	1.98
57446386--57447039	285	2.3	286	88	1	947	30	20	21	27	1.98
57447775--57447828	20	2.4	23	80	20	62	31	7	1	59	1.36
57447910--57448369	225	2.0	226	98	0	897	32	10	3	53	1.53
57450278--57450476	50	3.9	50	84	5	211	22	31	20	26	1.98
57452824--57452850	4	6.8	4	100	0	54	77	0	22	0	0.76
57456363--57456390	11	2.5	11	100	0	56	64	0	0	35	0.94
57465298--57465427	40	3.2	40	82	7	113	28	16	23	32	1.96
57465316--57465429	40	2.8	39	83	7	131	28	15	23	31	1.96
57466115--57466286	23	7.5	23	90	2	256	29	13	18	38	1.89
57467894--57468016	50	2.5	50	79	0	129	24	25	28	21	1.99
57468279--57468317	20	2.0	20	90	10	62	56	5	23	15	1.59
57478259--57478295	12	3.1	12	96	0	65	51	2	0	45	1.15
57483629--57483768	50	2.8	50	79	8	149	27	18	30	24	1.98
57484022--57484060	20	2.0	20	90	10	62	56	5	23	15	1.59
57491016--57491239	40	5.6	40	79	4	211	25	13	25	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57491012--57491234	80	2.8	80	88	2	304	25	13	25	35	1.93
57491924--57492141	23	9.5	23	90	0	328	29	12	18	39	1.87
57493733--57493770	17	2.3	17	86	4	51	57	5	31	5	1.43
57495612--57495760	38	3.9	38	87	0	208	12	20	28	37	1.90
57495780--57495977	38	5.1	38	76	10	175	12	22	28	37	1.90
57495803--57495869	22	3.0	22	84	0	89	11	19	28	40	1.87
57511646--57511707	26	2.4	26	83	5	72	33	14	16	35	1.89
57528534--57528867	38	8.7	37	69	14	149	12	19	29	38	1.89
57528670--57528809	60	2.3	59	79	4	154	10	17	30	42	1.82
57528716--57528759	22	2.0	22	86	0	61	11	13	29	45	1.79
57533423--57533456	17	2.0	17	88	11	52	47	8	8	35	1.66
57534468--57534513	23	2.0	22	87	4	65	47	10	0	41	1.38
57535254--57535299	23	2.0	22	87	4	65	47	10	0	41	1.38
57534175--57535750	786	2.0	788	99	0	3104	41	12	7	38	1.72
57536140--57536167	5	5.6	5	100	0	56	21	35	0	42	1.53
57537652--57537790	69	2.0	69	94	0	242	36	10	17	35	1.85
57547019--57547141	51	2.4	51	80	10	137	24	17	26	30	1.97
57551100--57551127	6	4.7	6	100	0	56	17	14	35	32	1.90
57563755--57563899	71	2.0	71	97	0	272	25	24	16	33	1.96
57598785--57598813	11	2.5	12	88	11	51	17	6	13	62	1.52
57603718--57603979	131	2.0	131	95	0	470	29	15	20	33	1.94
57607034--57607556	73	7.2	71	78	8	443	37	16	21	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57607036--57607556	35	14.4	36	78	7	457	37	16	21	24	1.93
57607032--57607556	219	2.4	218	82	6	600	37	16	21	24	1.93
57608757--57609178	139	3.0	139	84	2	542	31	22	19	26	1.98
57613880--57614005	57	2.2	57	97	2	238	67	7	9	15	1.41
57621776--57621815	14	2.7	15	92	7	73	40	5	5	50	1.46
57624893--57624996	31	3.4	30	71	10	93	24	14	12	49	1.78
57625456--57625536	27	3.0	27	78	7	83	17	13	40	28	1.87
57625471--57625570	27	3.7	27	76	10	98	11	13	41	35	1.79
57630424--57630459	17	2.1	18	89	5	56	63	5	22	8	1.43
57634527--57634818	151	1.9	151	97	0	557	29	22	13	34	1.93
57635720--57635828	20	5.4	20	75	4	94	10	30	22	37	1.87
57635769--57635851	40	2.1	40	88	4	123	13	33	19	33	1.90
57636952--57637012	23	2.8	22	76	16	65	39	1	6	52	1.37
57638092--57638167	18	4.2	18	84	3	91	32	25	9	32	1.87
57638869--57638921	19	2.9	17	78	16	54	43	1	0	54	1.11
57638862--57638910	25	2.0	25	95	0	89	38	2	0	59	1.09
57638864--57638917	25	2.2	25	89	0	81	38	1	0	59	1.08
57638927--57638967	19	2.2	19	83	12	50	34	0	2	63	1.08
57643815--57643872	22	2.7	21	82	10	64	43	15	20	20	1.88
57645897--57645997	43	2.3	43	91	0	157	33	24	14	26	1.94
57647925--57647985	32	1.9	32	100	0	122	37	16	16	29	1.91
57651721--57651769	24	2.0	24	100	0	98	30	12	24	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57657483--57657523	18	2.3	18	100	0	82	36	19	21	21	1.95
57663285--57663752	88	5.3	88	89	1	724	22	24	27	26	2.00
57664733--57664780	25	1.9	25	83	8	62	2	27	0	70	0.98
57665557--57665763	102	2.0	104	96	3	384	37	22	15	23	1.93
57671258--57671287	7	4.4	7	91	8	53	73	0	0	26	0.84
57671581--57671672	19	4.8	19	86	5	141	38	14	9	38	1.79
57671574--57671672	38	2.7	38	90	3	157	37	15	9	38	1.79
57674556--57674629	38	1.9	38	86	0	103	37	13	17	31	1.89
57677614--57677696	24	3.3	23	71	21	60	38	16	10	33	1.84
57677632--57677712	24	3.2	26	70	20	71	37	14	11	37	1.82
57677593--57677850	50	5.1	50	80	2	293	37	18	10	32	1.85
57677623--57677706	26	3.3	25	73	18	75	38	17	9	34	1.83
57682918--57682949	16	2.0	16	93	0	55	59	0	15	25	1.36
57691813--57691984	85	2.0	86	98	1	337	43	2	9	44	1.50
57700004--57700035	17	1.9	16	93	6	55	21	21	25	31	1.98
57704919--57705195	28	9.9	29	75	9	193	35	22	15	27	1.94
57704958--57705195	28	8.5	28	77	9	202	36	21	15	26	1.94
57704958--57705206	57	4.5	56	74	13	203	35	22	15	26	1.94
57717686--57717922	33	6.8	33	67	25	121	21	19	27	32	1.97
57717685--57717885	102	2.0	103	89	4	309	20	18	27	32	1.97
57725163--57725362	102	2.0	102	93	0	346	20	18	27	33	1.96
57725263--57725472	75	2.8	74	89	3	323	21	18	28	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57740611--57740666	23	2.4	23	90	0	85	10	19	28	41	1.85
57742288--57742329	10	4.4	10	79	11	52	80	9	0	9	0.89
57747665--57747712	24	2.0	24	83	0	60	33	25	20	20	1.97
57747626--57747751	63	2.0	63	85	3	173	31	23	22	23	1.98
57747689--57747790	39	2.6	39	84	3	125	31	24	21	22	1.98
57747625--57747820	102	1.9	102	86	0	275	31	23	20	23	1.98
57751136--57751200	27	2.4	28	72	10	64	43	6	6	44	1.54
57754608--57754637	15	1.9	16	93	6	53	56	0	0	43	0.99
57761427--57761472	23	2.0	23	91	0	74	41	23	6	28	1.79
57761626--57761694	30	2.3	31	82	7	79	43	4	21	30	1.72
57767987--57768204	108	2.0	108	95	0	391	34	22	9	33	1.86
57770979--57771046	35	1.9	35	82	11	86	60	1	5	32	1.30
57772690--57772735	24	2.0	24	86	4	67	54	6	4	34	1.46
57777732--57777770	19	2.1	19	85	9	53	38	2	0	58	1.12
57793427--57793462	18	2.0	18	88	0	54	19	25	5	50	1.69
57793447--57793483	18	2.0	19	89	5	58	24	32	5	37	1.78
57793441--57793500	21	3.0	21	85	7	72	28	33	3	35	1.74
57802006--57802191	50	3.6	50	86	5	212	26	19	29	25	1.99
57802054--57802235	50	3.6	50	82	4	197	26	19	29	23	1.98
57802600--57802635	18	2.0	18	100	0	72	27	16	16	38	1.90
57806780--57806820	6	6.8	6	100	0	82	51	0	31	17	1.46
57812377--57812754	125	3.0	125	92	0	594	29	16	22	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57815247--57815878	23	28.2	22	76	11	491	25	0	26	47	1.53
57815247--57815878	45	14.1	45	79	10	516	25	0	26	47	1.53
57816346--57816388	18	2.4	18	84	0	59	46	9	27	16	1.77
57817030--57817055	7	3.7	7	100	0	52	57	15	0	26	1.38
57817050--57817075	13	2.0	13	100	0	52	53	23	7	15	1.67
57818178--57818215	11	3.5	11	82	3	51	65	0	0	34	0.93
57818268--57818334	11	5.9	12	81	13	88	44	0	31	23	1.54
57818268--57818334	34	2.0	34	85	11	93	44	0	31	23	1.54
57820693--57820990	148	2.0	149	99	0	589	36	9	8	45	1.66
57822789--57823147	29	12.4	29	85	2	339	32	11	28	26	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210