genome.fa.s3.2.7.7.80.10.50.1000.179.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  179  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59666862--59666904	19	2.3	18	80	11	50	32	13	2	51	1.54
59667595--59667698	22	4.4	23	82	9	113	40	18	24	17	1.91
59667681--59667716	18	1.9	19	94	5	65	30	16	30	22	1.96
59667597--59667747	22	6.5	24	75	17	90	37	18	25	18	1.93
59667781--59667836	25	2.2	25	87	0	76	37	19	25	17	1.94
59670270--59670296	8	3.4	8	100	0	54	77	0	0	22	0.76
59670778--59670828	23	2.2	23	89	0	75	33	9	17	39	1.83
59674795--59674845	24	2.0	24	88	7	75	31	11	0	56	1.35
59679468--59679531	16	4.3	15	78	11	69	79	0	20	0	0.73
59679484--59679534	18	2.9	18	88	2	68	82	0	17	0	0.67
59679476--59679542	28	2.4	27	82	7	89	77	0	22	0	0.77
59679483--59679542	24	2.5	25	86	5	88	78	0	21	0	0.75
59679476--59679531	29	2.0	28	89	3	85	80	0	19	0	0.71
59680403--59680495	44	2.1	44	88	4	134	30	19	22	27	1.98
59680747--59681001	44	5.6	45	73	10	151	32	17	21	28	1.96
59680787--59680961	95	1.8	95	83	1	233	33	18	20	28	1.96
59682624--59682667	22	2.2	21	84	15	58	40	6	2	50	1.42
59682830--59683025	64	3.1	63	75	17	208	34	8	2	55	1.41
59682826--59683065	128	1.9	128	83	6	315	33	9	2	54	1.45
59683061--59683090	6	5.0	6	100	0	60	50	16	0	33	1.46
59689139--59689360	94	2.4	94	84	1	284	32	21	20	26	1.97
59698904--59698946	14	3.1	14	82	0	50	55	2	39	2	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59710571--59710609	18	2.2	17	86	13	53	33	0	20	46	1.51
59710835--59710956	23	5.3	24	78	8	112	24	20	24	30	1.99
59710835--59710949	46	2.5	46	85	0	158	24	21	24	29	1.99
59715150--59715438	89	3.2	88	82	6	341	20	23	25	30	1.99
59715792--59716499	175	4.0	177	88	3	1048	24	23	22	30	1.99
59715792--59716499	87	8.0	88	89	3	1044	24	23	22	30	1.99
59715792--59716499	267	2.7	266	91	0	1155	24	23	22	30	1.99
59718727--59718860	6	21.8	6	74	13	71	12	5	3	78	1.05
59718742--59718864	36	3.4	37	79	8	103	14	4	4	77	1.07
59718717--59718864	7	20.4	7	72	18	74	12	6	3	77	1.07
59718770--59718860	42	2.2	42	86	4	121	14	1	5	79	0.97
59726423--59726539	36	3.1	36	76	15	126	42	18	11	27	1.84
59726512--59726612	43	2.3	43	91	0	157	38	18	15	26	1.91
59728220--59728250	16	1.9	16	93	0	53	41	9	0	48	1.36
59728513--59728556	21	2.1	21	100	0	88	25	31	15	27	1.96
59729996--59730069	29	2.5	29	82	4	85	25	13	13	47	1.79
59730480--59730529	24	2.0	25	96	3	93	56	8	12	24	1.62
59730865--59730902	10	3.7	10	92	3	58	52	0	0	47	1.00
59731209--59731578	184	2.0	184	100	0	740	38	12	9	40	1.75
59733671--59733698	2	14.0	2	100	0	56	50	0	0	50	1.00
59734110--59734138	2	14.5	2	100	0	58	48	0	0	51	1.00
59734505--59734594	45	2.0	44	82	6	110	32	5	27	34	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59734733--59734774	15	2.7	16	82	14	52	52	2	0	45	1.13
59739058--59739088	9	3.4	9	90	0	53	25	12	22	38	1.90
59740152--59740178	2	13.5	2	100	0	54	51	0	0	48	1.00
59745841--59745900	18	3.3	18	85	0	84	60	20	3	16	1.50
59745843--59745920	36	2.1	36	83	4	93	61	19	3	15	1.48
59747514--59747630	41	2.9	41	93	0	189	23	29	19	28	1.98
59749229--59749253	13	1.9	13	100	0	50	68	24	0	8	1.16
59754385--59754416	15	2.1	15	94	0	55	68	9	6	15	1.36
59754742--59754775	15	2.3	15	90	5	52	44	0	14	41	1.45
59756999--59757107	34	3.2	32	75	10	110	39	0	16	43	1.54
59757175--59757442	127	2.1	125	85	6	346	36	15	17	31	1.91
59760980--59761014	18	1.9	18	94	0	61	40	5	28	25	1.78
59762825--59762856	15	2.1	15	94	0	55	68	9	6	15	1.36
59763182--59763215	15	2.3	15	90	5	52	44	0	14	41	1.45
59765439--59765547	34	3.2	32	75	10	110	39	0	16	43	1.54
59765615--59765882	127	2.1	125	85	6	346	36	15	17	31	1.91
59769357--59769391	18	1.9	18	94	0	61	40	5	28	25	1.78
59778865--59778901	20	1.9	19	89	10	58	45	0	0	54	1.00
59778865--59778903	10	4.0	9	84	15	51	46	0	0	53	1.00
59778863--59778961	24	4.1	24	72	12	76	47	0	3	49	1.17
59780177--59780387	109	2.0	109	88	3	320	36	20	14	28	1.92
59782568--59783328	125	6.1	125	96	0	1348	26	18	19	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59784478--59784524	21	2.2	21	88	0	67	25	38	10	25	1.88
59785304--59785350	21	2.2	21	88	0	67	25	38	10	25	1.88
59785435--59785480	15	3.0	16	84	15	62	13	15	0	71	1.14
59785444--59785480	8	4.6	8	93	6	58	10	13	0	75	1.04
59786283--59786317	6	5.8	6	89	0	52	8	5	0	85	0.73
59786283--59786317	12	2.9	12	95	0	61	8	5	0	85	0.73
59786282--59786317	18	2.0	18	94	0	63	8	8	0	83	0.82
59786295--59786338	10	4.5	10	83	13	56	2	15	0	81	0.78
59786283--59786377	12	8.5	11	75	8	50	5	9	5	80	1.03
59786282--59786337	19	3.0	19	82	7	53	5	14	0	80	0.88
59788172--59788720	273	2.0	275	91	0	895	31	20	19	28	1.97
59794439--59794515	31	2.6	28	70	24	68	24	7	10	57	1.59
59795124--59795214	45	2.0	46	97	2	175	23	10	13	52	1.71
59798452--59798482	3	10.0	3	93	6	53	64	0	0	35	0.94
59808990--59809053	31	2.1	31	84	0	83	25	15	10	48	1.77
59815223--59815288	16	4.5	15	69	21	50	19	22	3	54	1.58
59815208--59815293	43	2.0	43	95	0	154	23	22	2	52	1.59
59816460--59816494	12	3.0	12	87	4	54	28	8	0	62	1.24
59817099--59817130	2	16.0	2	100	0	64	50	0	0	50	1.00
59820343--59820452	24	4.5	26	73	8	88	20	30	20	29	1.98
59820384--59820480	25	3.9	25	75	4	81	17	27	20	34	1.95
59824601--59824635	18	1.9	18	94	0	61	74	2	2	20	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59824748--59824782	18	1.9	18	94	0	61	74	2	2	20	1.08
59824521--59824817	147	2.0	148	99	0	587	52	11	7	28	1.65
59824809--59824858	3	16.7	3	100	0	100	68	0	0	32	0.90
59825345--59825383	20	1.9	20	84	5	51	51	7	0	41	1.31
59825723--59825760	19	2.0	19	85	10	51	42	39	15	2	1.61
59826213--59827003	393	2.0	393	99	0	1575	22	20	31	25	1.98
59827744--59827783	12	3.5	12	77	22	50	32	2	0	65	1.06
59827819--59827846	6	4.7	6	100	0	56	50	14	0	35	1.43
59829855--59829890	18	1.9	19	88	5	56	52	0	0	47	1.00
59834655--59834698	22	2.0	22	100	0	88	40	4	13	40	1.65
59838216--59838264	24	2.1	22	85	7	62	53	0	2	44	1.12
59838154--59838276	29	4.2	29	75	12	117	45	0	6	47	1.34
59845804--59845849	23	2.0	23	100	0	92	39	13	4	43	1.63
59846502--59846548	19	2.4	19	82	3	58	48	0	4	46	1.21
59852702--59852740	19	2.1	19	100	0	78	33	5	0	61	1.18
59862952--59863043	31	3.1	31	75	4	100	33	9	13	43	1.76
59867680--59867715	18	2.0	18	94	0	63	41	33	2	22	1.68
59873226--59873253	2	14.0	2	100	0	56	50	0	0	50	1.00
59876263--59876320	14	4.1	14	84	2	71	37	20	3	37	1.70
59880609--59880879	129	2.1	130	97	2	508	39	15	6	39	1.72
59902489--59902642	80	1.9	80	98	0	299	30	5	28	35	1.79
59907886--59908090	110	1.9	110	79	7	236	50	10	3	35	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59912895--59912937	18	2.4	18	80	3	52	32	4	0	62	1.15
59921069--59921128	31	1.9	31	83	6	77	26	21	5	46	1.72
59927223--59927320	48	2.0	48	96	0	178	46	5	24	23	1.72
59931343--59931420	23	3.3	23	73	7	75	24	19	17	38	1.93
59931344--59931525	100	1.8	99	89	3	285	24	15	15	44	1.85
59931344--59931548	48	4.2	49	82	6	245	25	15	15	43	1.86
59932251--59932275	13	1.9	13	100	0	50	20	0	16	64	1.30
59934820--59935092	3	91.0	3	100	0	546	33	0	0	66	0.92
59937533--59937572	8	5.2	8	82	11	57	12	0	25	62	1.30
59938519--59938574	12	4.8	12	75	18	55	41	8	1	48	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210