genome.fa.s3.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  137  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45418823--45418887	26	2.5	26	85	2	78	36	18	20	24	1.94
45427311--45427366	13	4.4	12	82	10	58	16	19	0	64	1.29
45427653--45427690	20	1.9	20	100	0	76	42	13	0	44	1.43
45431666--45431767	48	2.1	48	92	0	168	21	19	16	42	1.89
45438351--45438399	10	4.6	10	83	14	53	59	4	0	36	1.17
45438351--45438397	11	4.3	11	78	7	51	61	4	0	34	1.15
45440572--45440605	8	4.0	8	92	7	50	73	0	11	14	1.10
45440591--45440642	19	2.7	18	74	11	50	75	5	13	5	1.18
45440963--45440988	13	2.0	13	100	0	52	38	7	7	46	1.61
45443819--45444010	92	2.1	92	86	1	260	38	15	16	30	1.89
45445831--45445861	13	2.4	13	94	0	53	29	12	6	51	1.65
45447542--45447717	51	3.5	51	86	4	230	25	26	13	35	1.92
45450746--45450847	20	5.5	18	73	20	77	42	1	2	52	1.27
45450784--45450832	25	1.9	26	84	12	66	44	2	4	48	1.33
45457292--45457345	19	2.8	19	94	0	99	37	9	16	37	1.81
45457292--45457368	38	1.9	40	87	10	113	36	7	15	40	1.76
45464331--45464737	44	9.3	44	63	5	205	25	27	25	21	2.00
45464282--45464770	88	5.6	88	93	0	809	26	28	24	20	1.99
45464772--45464891	44	2.7	44	88	5	172	28	17	26	27	1.98
45464973--45465084	50	2.2	50	82	0	125	30	18	23	27	1.98
45465256--45465548	128	2.3	128	86	0	415	31	20	21	26	1.98
45465521--45465891	128	2.9	128	86	6	401	29	21	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45465045--45466451	345	4.1	345	93	0	2375	30	20	21	27	1.98
45465607--45465891	128	2.2	128	94	0	507	29	22	20	27	1.98
45465952--45466238	128	2.2	128	86	1	405	31	20	19	28	1.97
45465173--45466585	44	32.6	43	68	14	334	30	20	21	26	1.98
45466429--45466583	45	3.5	46	80	7	113	31	21	23	23	1.98
45467309--45467353	23	2.0	23	81	0	54	22	0	15	62	1.33
45468626--45468839	117	1.8	117	100	0	428	30	10	17	42	1.82
45470964--45471003	19	2.1	19	100	0	80	32	5	0	62	1.17
45470969--45471004	11	3.5	11	78	21	51	36	5	0	58	1.22
45471436--45471466	9	3.4	9	90	0	53	25	12	22	38	1.90
45471519--45471555	18	2.1	18	94	0	65	51	13	5	29	1.63
45473162--45473197	5	7.2	5	87	0	54	2	22	0	75	0.94
45473162--45473202	20	2.0	20	90	0	64	7	19	0	73	1.07
45475165--45475213	26	1.9	26	83	4	64	59	6	12	22	1.55
45475948--45476495	288	1.9	285	80	7	626	49	9	11	29	1.70
45478324--45478448	62	2.0	62	92	0	205	46	12	6	34	1.68
45478934--45478992	29	2.2	26	75	18	66	38	5	13	42	1.66
45481913--45481974	31	2.0	31	93	0	106	35	9	12	41	1.76
45482539--45482580	12	3.4	12	90	6	66	71	16	11	0	1.14
45482539--45482582	13	3.5	13	90	3	72	70	15	13	0	1.17
45490145--45490189	7	6.4	7	89	0	72	17	55	26	0	1.42
45491272--45491815	267	2.0	267	87	0	793	25	25	22	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45502862--45502896	15	2.3	15	90	0	52	60	14	0	25	1.35
45503208--45503232	8	3.1	8	100	0	50	88	0	0	12	0.53
45507154--45508426	436	2.9	435	93	1	2110	34	17	11	37	1.86
45510800--45510842	20	2.2	20	100	0	86	46	20	9	23	1.79
45515619--45515815	58	3.4	58	85	2	218	41	10	28	19	1.84
45517453--45517490	15	2.4	16	86	8	60	28	2	5	63	1.30
45525762--45525795	15	2.3	15	94	0	59	20	23	5	50	1.70
45553212--45553366	78	2.0	78	90	0	247	15	43	22	18	1.88
45553832--45553866	8	4.5	8	92	7	63	11	0	0	88	0.51
45553832--45553866	15	2.3	15	100	0	70	11	0	0	88	0.51
45554300--45554338	14	2.8	14	92	0	60	33	2	0	64	1.08
45559138--45559198	29	2.1	29	90	0	95	75	9	6	8	1.19
45559135--45559193	23	2.4	25	83	10	70	76	10	6	6	1.16
45559178--45559217	6	6.7	6	91	0	53	67	10	7	15	1.41
45561307--45561926	129	4.8	128	90	2	931	32	18	24	24	1.97
45561951--45562197	44	5.6	42	73	12	169	27	21	27	23	1.99
45561996--45562114	43	2.7	44	83	7	129	26	21	27	25	1.99
45561955--45562242	132	2.2	132	85	3	375	28	20	27	23	1.99
45563729--45563786	29	2.0	29	96	0	107	6	12	24	56	1.59
45563827--45563868	17	2.5	17	92	0	66	35	2	2	59	1.23
45563824--45563869	20	2.3	20	85	7	58	34	2	2	60	1.21
45569433--45569461	14	2.1	14	93	6	51	17	13	0	68	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45574441--45574546	45	2.4	44	79	7	108	45	6	18	29	1.75
45576824--45577010	50	3.8	48	82	4	232	25	20	32	21	1.98
45576829--45577010	97	1.8	99	87	3	269	26	20	31	21	1.98
45578385--45578643	141	1.8	141	100	0	518	31	15	22	31	1.94
45582803--45583084	50	5.7	50	80	6	306	27	20	32	19	1.96
45582798--45583074	147	1.9	147	93	0	482	27	20	33	19	1.96
45585632--45585685	25	2.2	25	86	6	74	12	11	9	66	1.44
45588995--45589021	2	13.5	2	100	0	54	51	0	0	48	1.00
45592153--45592228	29	2.6	29	84	15	104	53	0	30	15	1.42
45596681--45596728	19	2.4	18	83	16	60	33	10	8	47	1.68
45603545--45603643	49	2.0	49	100	0	198	14	16	14	55	1.69
45603633--45603664	7	4.4	7	96	4	55	0	12	0	87	0.54
45615896--45615949	18	2.9	18	82	12	65	40	9	16	33	1.80
45626151--45626187	15	2.3	17	86	9	51	37	0	10	51	1.37
45630599--45630636	16	2.4	16	87	12	60	26	15	7	50	1.72
45630602--45630639	17	2.3	17	95	4	69	26	18	5	50	1.68
45632102--45632140	20	2.0	20	94	0	69	51	5	0	43	1.24
45636128--45636240	43	2.6	43	91	1	181	24	15	25	33	1.95
45641452--45641545	48	2.0	48	95	0	170	34	14	29	21	1.93
45649353--45649378	11	2.4	11	100	0	52	73	7	11	7	1.26
45651978--45652265	145	2.0	143	97	1	540	27	13	10	48	1.75
45660261--45660303	21	2.0	21	90	0	68	18	4	25	51	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45660129--45660392	142	1.9	142	94	0	465	20	12	23	43	1.86
45660764--45660807	22	2.0	22	100	0	88	36	9	18	36	1.82
45664561--45664613	24	2.3	22	83	6	61	26	3	5	64	1.33
45669272--45669299	13	2.2	13	100	0	56	32	14	17	35	1.90
45671942--45672117	40	4.4	40	86	2	228	13	15	27	43	1.83
45682245--45682304	27	2.2	28	88	5	88	41	21	20	16	1.90
45682445--45682609	27	6.1	27	85	4	199	26	15	18	40	1.90
45682445--45682609	81	2.0	81	86	4	226	26	15	18	40	1.90
45689724--45689815	19	4.8	19	91	0	157	39	9	14	36	1.79
45689724--45689838	19	5.7	22	80	15	94	38	8	14	38	1.77
45690473--45690515	22	1.9	23	86	13	63	30	2	4	62	1.28
45698872--45699059	44	4.3	44	68	14	145	29	17	24	29	1.97
45698801--45699164	131	2.8	132	87	6	542	26	18	24	31	1.98
45699426--45699470	23	2.0	23	86	4	65	37	6	17	37	1.76
45699399--45699473	19	3.6	21	75	15	66	38	6	16	38	1.74
45702120--45702149	13	2.3	13	100	0	60	36	13	0	50	1.42
45702577--45702658	24	3.4	24	86	5	85	17	25	9	47	1.78
45705052--45705095	16	2.8	16	83	10	54	79	0	6	13	0.92
45705062--45705108	21	2.1	21	84	7	58	72	0	4	23	1.02
45711015--45711067	16	3.3	16	86	0	79	41	3	30	24	1.72
45728555--45728791	124	1.9	125	92	0	395	31	16	22	29	1.96
45728721--45728861	71	2.0	71	81	0	165	34	18	21	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45732176--45732257	29	2.9	29	98	1	157	28	0	25	46	1.53
45732177--45732288	29	3.9	28	89	6	154	30	0	25	43	1.55
45732278--45732353	21	3.8	21	81	6	79	26	0	25	48	1.51
45732339--45732642	29	11.3	29	70	23	170	28	0	25	45	1.56
45732318--45732592	50	5.3	49	78	17	283	28	0	25	46	1.53
45732339--45732621	79	3.6	79	99	0	548	28	0	25	45	1.56
45732389--45732642	108	2.3	106	86	8	336	27	0	26	45	1.57
45733017--45733051	18	1.9	18	94	0	61	34	8	31	25	1.86
45733891--45733928	20	1.9	20	84	10	51	55	7	2	34	1.43
45734855--45734896	11	3.8	11	81	12	59	52	7	19	21	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210