genome.fa.s3.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  122  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41004581--41004614	17	2.0	17	88	0	50	2	17	17	61	1.46
41011786--41011824	20	2.1	19	85	9	53	41	23	0	35	1.55
41014624--41014670	15	3.4	14	80	8	60	61	0	0	38	0.96
41016841--41016993	43	3.6	43	72	11	134	23	19	28	28	1.98
41022465--41022526	26	2.4	26	86	0	88	33	12	14	38	1.84
41033837--41033897	28	2.2	28	85	5	81	50	3	0	45	1.17
41033737--41034021	93	3.0	94	84	6	292	48	3	3	44	1.35
41033827--41034021	93	2.1	92	91	0	309	46	4	4	45	1.41
41041681--41041727	15	3.4	14	80	8	60	61	0	0	38	0.96
41049489--41049551	26	2.4	26	83	0	81	38	14	11	36	1.81
41058815--41058846	15	2.1	15	94	0	55	15	6	9	68	1.36
41061097--41061123	13	2.1	13	100	0	54	22	0	14	62	1.31
41061229--41061282	24	2.3	24	81	9	58	33	1	5	59	1.31
41078010--41078036	5	5.4	5	100	0	54	22	18	22	37	1.95
41081025--41081142	59	2.0	59	89	0	182	30	15	16	37	1.90
41092158--41092189	17	1.9	17	93	6	57	59	0	9	31	1.29
41092737--41092787	21	2.4	21	83	6	59	47	0	25	27	1.53
41092737--41092779	20	2.0	20	82	8	50	44	0	30	25	1.55
41093055--41093093	20	1.9	21	89	5	62	56	20	2	20	1.54
41093936--41093973	18	2.1	19	85	5	51	50	5	7	36	1.54
41094449--41094501	20	2.6	21	75	6	63	39	15	26	18	1.90
41095488--41095533	23	2.0	22	84	12	58	19	4	4	71	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41096685--41096726	17	2.5	17	88	0	57	11	2	7	78	1.04
41096672--41096718	12	3.8	12	78	15	51	12	0	10	76	1.02
41100696--41100763	26	2.7	26	86	6	95	16	26	22	35	1.94
41100702--41100763	25	2.5	26	84	7	83	17	27	22	32	1.97
41111501--41111565	20	3.2	20	70	12	60	26	29	13	30	1.94
41118925--41120124	89	13.3	88	77	6	875	33	16	19	30	1.94
41118925--41120124	44	26.6	44	77	6	909	33	16	19	30	1.94
41118925--41120124	133	8.9	132	75	6	927	33	16	19	30	1.94
41118925--41120088	221	5.2	221	75	8	828	33	16	19	30	1.94
41121801--41121850	22	2.3	22	86	3	75	24	16	4	56	1.57
41126639--41126809	64	2.7	63	86	2	211	21	28	19	30	1.97
41127369--41127421	6	8.5	6	83	8	52	73	0	18	7	1.06
41127369--41127425	13	4.7	12	79	10	53	71	0	21	7	1.08
41127904--41127960	15	4.0	13	74	17	51	63	1	1	33	1.15
41132618--41132654	19	1.9	19	94	0	65	51	2	24	21	1.61
41135226--41135498	137	2.0	141	88	2	410	42	6	11	39	1.66
41137094--41137142	19	2.5	20	93	6	82	38	10	14	36	1.80
41137100--41137165	19	3.0	22	82	12	66	37	7	16	37	1.77
41143889--41144476	88	6.7	88	89	0	852	29	26	23	20	1.99
41144476--41144617	45	3.2	45	83	2	196	28	21	21	27	1.99
41144651--41144845	100	2.0	100	84	4	259	31	20	21	26	1.98
41144852--41145280	44	9.9	43	71	12	245	30	19	22	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41144856--41145314	217	2.1	217	84	3	593	30	19	22	27	1.98
41145738--41145795	19	2.9	19	78	9	71	37	8	13	39	1.76
41145738--41145793	21	2.8	19	79	10	67	37	8	12	41	1.74
41151473--41151545	37	2.0	37	97	0	137	45	6	15	32	1.72
41165606--41165683	22	3.5	22	85	0	102	47	20	19	12	1.82
41165976--41166000	8	3.1	8	100	0	50	36	12	0	52	1.39
41168899--41168995	42	2.3	42	83	0	113	31	15	15	37	1.89
41169083--41169176	24	3.9	24	79	5	109	25	20	22	31	1.98
41169084--41169178	48	2.0	48	89	0	145	25	20	23	31	1.98
41169132--41169283	64	2.4	64	86	2	207	26	18	23	31	1.97
41169196--41169242	24	2.0	24	91	0	76	25	21	25	27	1.99
41169909--41169945	16	2.2	18	85	9	51	45	5	8	40	1.56
41171538--41171580	10	4.4	10	80	16	54	39	2	0	58	1.11
41175524--41175554	16	1.9	16	100	0	62	58	16	25	0	1.38
41175524--41175561	16	2.5	15	91	8	60	60	15	23	0	1.35
41187492--41187535	22	2.0	22	82	4	54	9	18	22	50	1.75
41193847--41193934	38	2.3	38	82	3	106	34	15	14	35	1.89
41194041--41194208	86	2.0	86	85	2	230	29	21	16	32	1.95
41205910--41206016	32	3.3	32	82	7	110	20	37	22	19	1.94
41209171--41209251	30	2.6	31	86	3	110	20	30	11	37	1.88
41209248--41209272	12	2.1	12	100	0	50	56	28	0	16	1.41
41213074--41213650	45	12.8	45	76	5	513	26	23	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41213027--41213650	89	7.0	87	83	7	707	26	23	18	31	1.97
41213084--41213650	134	4.2	133	77	5	507	26	22	19	31	1.98
41213027--41213648	179	3.5	179	89	1	890	26	23	18	31	1.97
41214751--41214862	42	2.7	42	90	0	161	28	26	11	33	1.91
41214945--41214977	13	2.3	15	85	15	52	12	15	0	72	1.12
41214945--41214977	7	4.7	7	85	14	50	12	15	0	72	1.12
41217793--41217834	19	2.2	19	83	8	50	40	9	21	28	1.84
41221822--41221874	14	3.8	14	78	9	54	28	32	18	20	1.97
41221827--41221874	21	2.3	21	85	0	60	29	31	18	20	1.97
41236141--41236193	14	3.8	14	78	9	54	28	32	18	20	1.97
41236146--41236193	21	2.3	21	85	0	60	29	31	18	20	1.97
41240031--41240067	15	2.5	15	86	0	56	45	0	0	54	1.00
41247503--41247540	16	2.4	16	90	0	58	65	10	5	18	1.41
41247657--41247706	17	2.9	18	79	8	59	46	10	14	30	1.77
41251239--41251272	17	2.0	18	88	11	54	41	11	0	47	1.40
41259261--41259313	25	2.1	25	92	0	88	41	15	7	35	1.75
41264054--41264099	23	2.0	23	91	0	74	17	17	10	54	1.70
41265839--41265971	58	2.3	61	81	7	168	42	0	3	52	1.24
41265990--41266085	44	2.1	46	84	7	126	35	23	6	34	1.80
41266067--41266133	16	4.2	16	90	0	107	26	29	4	38	1.76
41268084--41268166	40	2.0	40	80	15	91	53	2	4	39	1.35
41268210--41268250	21	1.9	22	90	5	66	75	2	21	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41277456--41277499	19	2.3	20	84	7	56	27	20	11	40	1.86
41279604--41279653	16	3.4	14	78	13	55	72	0	14	14	1.14
41279604--41279653	22	2.2	23	86	10	68	72	0	14	14	1.14
41280828--41281669	339	2.5	341	93	1	1411	28	21	23	25	1.99
41280828--41281669	85	9.9	85	95	0	1398	28	21	23	25	1.99
41281678--41282005	129	2.5	129	93	0	566	31	18	21	28	1.97
41281726--41282014	44	6.7	43	72	8	178	30	19	21	28	1.97
41288484--41288535	19	2.6	19	84	6	59	15	3	5	75	1.14
41288492--41288535	10	4.4	10	80	11	54	15	2	4	77	1.04
41289284--41289407	48	2.6	48	86	0	167	19	54	13	12	1.70
41289283--41289408	24	5.2	24	66	14	71	19	54	13	12	1.70
41291280--41291391	55	2.0	56	98	1	217	26	13	24	35	1.92
41292356--41292532	85	2.1	86	97	1	338	40	14	11	33	1.82
41299843--41299882	20	2.0	20	90	0	62	27	10	12	50	1.72
41299828--41299894	34	1.9	35	87	3	100	32	8	11	46	1.72
41302128--41302190	27	2.2	30	86	8	87	19	50	11	19	1.76
41306363--41306560	98	2.0	98	95	1	353	28	13	17	40	1.87
41308715--41308821	21	5.2	21	80	6	112	45	17	22	14	1.84
41316298--41316390	41	2.3	40	80	10	109	24	7	1	66	1.24
41316613--41316647	3	11.7	3	87	0	52	28	2	2	65	1.21
41317613--41317750	72	1.9	72	98	0	267	42	2	10	44	1.53
41317844--41318202	178	2.0	180	89	1	551	35	9	6	47	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41321201--41321239	20	2.0	20	84	0	51	33	0	7	58	1.26
41323753--41323783	7	4.4	7	95	0	53	29	0	0	70	0.87
41325011--41325101	48	1.9	46	82	10	112	31	13	1	53	1.46
41324980--41326040	527	2.0	531	97	1	2022	28	12	8	50	1.69
41326619--41326665	24	2.0	24	87	4	69	29	0	8	61	1.25
41326789--41327048	120	2.2	120	96	1	475	52	4	6	36	1.48
41337230--41337265	18	1.9	18	88	5	54	47	5	25	22	1.73
41359925--41360002	41	1.9	41	94	0	138	32	6	12	48	1.67
41361388--41361415	14	2.0	14	100	0	56	42	21	7	28	1.79
41361832--41361900	35	2.0	35	100	0	138	52	8	15	23	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210