genome.fa.s3.2.7.7.80.10.50.1000.208.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  208  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69041701--69041733	17	1.9	17	93	0	57	30	9	0	60	1.27
69044794--69044854	26	2.3	26	85	0	86	60	1	1	36	1.16
69048157--69048341	92	2.0	93	97	1	354	35	22	7	34	1.83
69056175--69056227	16	3.5	16	75	15	67	18	1	20	58	1.49
69056174--69056229	29	1.9	29	100	0	112	17	1	19	60	1.45
69060080--69060563	148	3.3	148	79	9	440	42	10	4	42	1.59
69060467--69060510	20	2.2	20	87	0	61	47	9	2	40	1.48
69061318--69061698	42	9.1	42	86	0	483	36	22	18	22	1.95
69061318--69061698	126	3.0	126	88	0	548	36	22	18	22	1.95
69067370--69067430	32	1.9	32	96	0	113	19	36	22	21	1.95
69072979--69073015	2	18.5	2	94	0	65	54	0	0	45	1.00
69073007--69073058	10	5.0	10	75	9	50	71	1	7	19	1.20
69074479--69074515	17	2.1	18	85	14	51	54	8	0	37	1.30
69076161--69076216	11	4.8	11	80	8	58	28	0	12	58	1.34
69082047--69082131	43	2.0	43	93	2	145	49	27	5	17	1.69
69085232--69085459	112	2.0	112	93	0	393	28	25	13	32	1.94
69086693--69086735	18	2.3	18	88	4	59	55	0	2	41	1.12
69095701--69095748	18	2.6	18	83	6	60	50	2	4	43	1.33
69095761--69095810	22	2.4	21	86	6	66	26	4	8	62	1.41
69100387--69100426	21	1.9	21	84	0	53	32	2	15	50	1.57
69106387--69106483	48	2.0	48	95	0	176	37	9	19	34	1.84
69107571--69107645	37	2.1	36	92	2	123	17	12	28	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69111249--69111302	28	2.0	27	82	13	67	14	0	27	57	1.38
69116721--69116770	21	2.4	21	80	12	59	56	2	4	38	1.30
69118154--69118383	114	2.0	115	98	1	444	21	13	29	34	1.92
69123608--69123915	45	6.8	46	76	11	253	20	19	15	44	1.87
69123757--69123825	22	3.1	22	67	19	61	23	18	14	43	1.87
69131441--69131516	27	2.8	27	90	4	109	17	26	36	19	1.94
69131570--69131622	22	2.3	23	84	12	74	66	1	30	1	1.13
69140260--69140711	150	3.0	150	84	2	579	26	18	21	33	1.96
69140259--69140707	50	9.0	50	82	3	415	26	18	21	33	1.96
69141734--69141820	45	1.9	45	81	4	104	49	10	12	27	1.73
69142100--69142152	23	2.2	26	86	10	76	3	11	3	81	0.96
69142573--69142600	5	5.6	5	100	0	56	0	0	17	82	0.68
69146032--69146099	9	7.7	9	73	14	61	57	1	2	38	1.23
69146487--69146528	3	14.0	3	84	0	57	64	0	4	30	1.14
69149824--69149856	15	2.1	16	88	5	50	24	0	0	75	0.80
69153313--69153488	39	4.5	39	76	5	167	33	3	18	43	1.69
69153318--69153488	78	2.2	79	85	6	224	33	4	19	43	1.70
69157781--69157862	25	3.2	25	65	21	71	28	24	31	15	1.96
69157806--69157888	26	3.2	26	65	21	75	27	25	27	19	1.99
69157709--69157891	51	3.6	51	90	3	282	26	25	29	19	1.98
69159516--69159560	21	2.2	20	84	4	54	35	26	11	26	1.90
69167804--69167837	3	11.0	3	87	6	50	35	2	0	61	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69167917--69167943	2	13.5	2	100	0	54	48	0	0	51	1.00
69174221--69174264	24	1.9	24	90	9	74	36	0	2	61	1.09
69174378--69174432	22	2.4	23	84	6	76	49	1	1	47	1.23
69176456--69176503	18	2.6	18	96	3	87	27	6	12	54	1.61
69177396--69177428	15	2.1	16	88	5	50	15	6	9	69	1.34
69184500--69184525	6	4.3	6	100	0	52	15	0	0	84	0.62
69186175--69186237	32	2.0	32	87	0	90	46	3	6	44	1.45
69195904--69195933	16	1.9	16	93	6	53	50	6	6	36	1.55
69196516--69196578	32	2.0	32	87	0	90	44	3	7	44	1.49
69203472--69203650	42	4.5	42	78	13	216	24	17	26	31	1.97
69203435--69203650	117	1.8	117	91	3	355	23	18	26	31	1.97
69203556--69203754	102	2.0	102	91	4	330	21	20	27	31	1.97
69210475--69210678	42	5.1	42	76	14	207	22	18	25	33	1.97
69210536--69210680	75	1.9	75	92	2	247	22	17	26	33	1.96
69212885--69212953	3	23.0	3	100	0	138	66	0	33	0	0.92
69213533--69213577	22	2.0	22	82	0	54	31	15	6	46	1.72
69214260--69214316	3	18.3	3	78	3	51	54	1	42	1	1.21
69214260--69214317	9	6.6	9	75	11	57	53	1	43	1	1.21
69214646--69214732	40	2.3	38	86	7	115	34	4	10	50	1.57
69214524--69214732	76	2.7	77	77	10	230	34	4	11	48	1.60
69217678--69217718	6	6.8	6	100	0	82	17	17	17	48	1.81
69219335--69220764	720	2.0	709	96	1	2626	30	18	14	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69220507--69221560	156	6.8	156	91	4	1601	29	9	8	52	1.64
69220507--69221560	314	3.4	311	90	4	1613	29	9	8	52	1.64
69221961--69222014	20	2.7	20	88	5	83	0	37	0	62	0.95
69222074--69222416	54	6.4	54	100	0	686	10	33	32	23	1.89
69229832--69229856	7	3.6	7	100	0	50	40	16	12	32	1.84
69230386--69230415	12	2.5	12	94	0	51	40	0	0	60	0.97
69230398--69230752	59	6.0	59	94	0	595	46	1	5	46	1.37
69232408--69232450	21	2.0	21	100	0	86	30	9	18	41	1.82
69232923--69232983	25	2.4	25	88	0	86	26	16	39	18	1.91
69232986--69233066	34	2.4	33	79	6	81	38	3	30	27	1.74
69233193--69233520	162	2.0	162	99	0	647	24	19	16	39	1.91
69239632--69239754	40	3.1	40	80	6	142	26	21	23	27	1.99
69239791--69239902	40	2.8	40	83	2	127	28	18	24	28	1.98
69239986--69240073	40	2.2	40	87	0	131	29	23	22	23	1.99
69240006--69240095	40	2.2	40	86	7	121	30	24	23	22	1.99
69239831--69240211	155	2.4	154	84	5	473	29	20	21	27	1.98
69240404--69240443	14	2.8	15	81	11	57	47	0	12	40	1.41
69241729--69241771	14	3.3	14	78	18	56	34	6	11	46	1.67
69244083--69244184	43	2.4	43	83	0	132	28	14	24	32	1.95
69245456--69245497	3	14.0	3	94	0	66	66	4	0	28	1.12
69246229--69246947	153	4.8	151	85	6	901	42	9	5	42	1.62
69247378--69247412	16	2.2	16	94	0	61	74	0	25	0	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69247729--69248233	42	12.1	42	86	0	654	37	22	17	22	1.94
69258774--69258815	22	1.9	22	95	0	75	9	21	28	40	1.84
69258975--69259074	43	2.3	43	84	1	139	18	20	32	30	1.96
69258888--69259089	43	4.7	43	72	6	115	24	21	27	27	1.99
69259063--69259202	43	3.3	42	82	4	172	26	31	20	21	1.98
69259038--69259288	86	2.9	85	77	5	218	27	28	21	22	1.99
69259209--69259352	43	3.4	42	79	3	135	29	27	18	25	1.98
69259208--69259395	86	2.2	87	77	0	198	29	26	17	26	1.97
69259616--69259697	21	3.9	21	85	0	74	6	42	18	32	1.75
69259669--69259814	65	2.2	66	90	3	224	12	30	18	39	1.87
69270112--69270826	113	6.3	114	89	3	1031	31	25	21	20	1.98
69270112--69270826	225	3.2	226	87	4	1043	31	25	21	20	1.98
69270745--69270901	81	2.0	80	86	6	219	31	24	19	24	1.98
69271578--69271619	3	14.0	3	94	0	66	66	4	0	28	1.12
69272355--69272414	32	1.9	31	86	6	86	50	6	6	36	1.55
69272327--69272793	151	3.1	151	85	4	487	41	10	5	41	1.64
69293744--69293781	19	2.0	19	100	0	76	36	31	0	31	1.58
69294312--69294553	50	4.8	50	88	2	308	21	30	23	25	1.99
69313839--69313888	23	2.1	23	85	3	64	24	24	20	32	1.98
69320656--69320693	20	1.9	20	88	0	58	50	13	7	28	1.69
69320677--69320716	14	2.9	14	84	0	53	42	17	7	32	1.77
69322965--69323019	18	3.0	19	80	15	62	52	1	3	41	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69329917--69329967	15	3.5	14	84	7	50	37	3	3	54	1.37
69347126--69347181	28	2.0	28	92	0	94	21	14	28	35	1.92
69356365--69356395	2	15.5	2	100	0	62	48	0	51	0	1.00
69363554--69363587	16	2.0	18	88	11	54	41	11	0	47	1.40
69366569--69366595	6	4.5	6	100	0	54	18	18	0	62	1.32
69368613--69368643	15	2.1	15	93	0	53	9	6	9	74	1.23
69376334--69376373	20	2.0	20	90	0	62	27	10	12	50	1.72
69376319--69376385	34	1.9	35	90	3	109	31	8	13	46	1.74
69376313--69376389	14	5.0	15	71	20	52	33	9	14	42	1.77
69379364--69379432	18	3.8	18	77	7	86	39	2	43	14	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210