genome.fa.s3.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  171  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56848676--56848717	22	2.1	19	86	13	57	45	2	0	52	1.13
56849232--56849273	21	2.0	20	86	13	59	21	47	9	21	1.79
56852308--56852356	22	2.3	22	82	3	64	36	2	4	57	1.30
56853196--56853234	19	2.1	19	90	4	62	38	2	5	53	1.37
56861232--56861303	34	2.1	34	82	5	83	41	19	9	29	1.83
56861482--56861723	41	5.9	41	90	0	385	22	29	19	28	1.98
56861839--56862037	64	3.2	63	86	9	257	42	17	7	32	1.77
56866261--56866294	15	2.3	15	90	10	52	38	17	5	38	1.74
56866856--56866902	20	2.3	20	79	17	53	27	27	17	27	1.97
56868442--56868511	13	5.1	14	76	8	72	77	1	20	1	0.93
56868443--56868509	29	2.4	27	85	5	80	79	1	17	1	0.89
56868442--56868507	14	4.7	14	81	5	80	78	1	18	1	0.90
56875395--56875422	6	4.7	6	100	0	56	35	50	0	14	1.43
56885638--56885664	10	2.7	10	100	0	54	55	22	0	22	1.44
56885712--56885753	20	2.1	20	86	0	57	57	21	0	21	1.41
56885712--56885740	10	2.9	10	100	0	58	58	20	0	20	1.39
56885840--56885913	34	2.2	34	90	4	114	54	10	5	29	1.57
56887338--56887391	22	2.5	22	78	3	65	25	20	16	37	1.93
56887397--56887541	62	2.3	62	78	0	173	28	22	13	35	1.92
56889450--56889499	11	4.5	11	82	7	66	22	30	2	46	1.63
56889446--56889499	22	2.5	22	85	11	76	22	27	1	48	1.61
56890706--56890738	7	4.7	7	100	0	66	27	0	15	57	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56891938--56891968	12	2.6	12	94	0	53	41	0	6	51	1.27
56891924--56892066	70	2.0	71	91	1	234	46	13	2	36	1.58
56891994--56892031	12	2.9	13	92	7	60	47	0	0	52	1.00
56891994--56892032	7	5.9	7	82	11	55	46	0	0	53	1.00
56892059--56892320	21	12.5	21	82	10	331	44	30	0	24	1.54
56892274--56892355	15	5.3	15	69	28	64	45	30	1	23	1.61
56892290--56892343	27	2.0	27	96	0	99	40	35	1	22	1.65
56892085--56892360	63	4.4	61	81	12	212	44	29	0	25	1.57
56892059--56892355	84	3.5	81	80	14	268	44	30	0	24	1.57
56892419--56892581	35	4.5	35	67	18	107	47	9	4	38	1.58
56892402--56892615	112	1.9	112	95	0	383	44	8	7	39	1.63
56895614--56896054	125	3.5	125	90	3	710	29	22	17	30	1.96
56897286--56897330	9	5.0	9	81	10	56	53	2	2	42	1.25
56897492--56897539	23	2.0	25	84	15	66	52	0	6	41	1.27
56898173--56898211	20	2.0	20	94	0	69	33	7	5	53	1.51
56898514--56898762	20	12.6	19	77	9	146	21	16	5	56	1.60
56898520--56898711	99	1.9	100	82	13	245	21	15	5	57	1.59
56898509--56898762	119	2.1	118	83	6	309	21	16	5	56	1.60
56898500--56898705	41	5.1	40	73	13	147	20	16	4	57	1.56
56898673--56898767	37	2.5	37	83	8	111	22	13	6	57	1.58
56898517--56898762	99	2.5	98	77	12	240	21	15	5	56	1.60
56899027--56899068	17	2.3	18	80	16	50	66	0	4	28	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56899497--56899549	20	2.6	21	82	8	65	22	18	7	50	1.72
56899715--56899757	19	2.2	20	83	4	52	41	4	6	46	1.51
56902543--56902588	16	2.9	15	87	6	56	54	8	4	32	1.51
56905187--56905219	17	1.9	17	93	0	57	72	0	0	27	0.85
56907844--56907892	25	1.9	26	87	4	73	38	2	0	59	1.09
56908872--56909074	112	1.8	111	79	5	239	40	5	10	42	1.64
56909977--56910163	41	4.6	41	90	2	304	18	21	28	31	1.97
56910509--56910541	14	2.3	15	89	5	50	33	0	27	39	1.57
56910678--56910715	7	5.4	7	90	0	58	18	0	47	34	1.49
56910561--56910802	131	1.8	132	84	4	337	28	1	27	42	1.63
56910678--56910723	21	2.2	21	88	0	65	21	0	45	32	1.52
56910828--56910869	7	6.0	7	85	0	57	16	0	50	33	1.46
56910828--56910869	21	2.0	21	90	0	66	16	0	50	33	1.46
56910959--56911013	27	2.0	29	82	13	71	50	0	5	43	1.25
56911236--56911281	22	2.0	23	91	4	76	69	4	0	26	1.07
56911286--56911368	39	2.1	39	84	4	105	39	16	21	21	1.92
56912163--56912244	38	2.2	38	86	4	112	20	15	8	54	1.67
56916142--56916283	43	3.3	43	83	4	173	23	18	31	26	1.97
56918097--56918320	112	2.0	112	100	0	448	33	30	21	15	1.94
56928841--56928877	18	2.1	18	89	0	56	59	2	27	10	1.44
56934958--56935361	160	2.6	154	84	7	494	41	11	4	42	1.62
56936354--56936490	42	3.3	42	87	0	184	40	20	18	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56948003--56948063	9	6.6	9	77	7	59	34	1	39	24	1.65
56948009--56948062	19	2.8	19	78	10	56	33	1	38	25	1.67
56948009--56948064	29	2.0	28	89	3	85	35	1	37	25	1.66
56954438--56954464	6	4.5	6	100	0	54	55	0	29	14	1.40
56955438--56955530	19	5.1	19	72	12	86	46	12	10	30	1.76
56955435--56955553	54	2.2	54	95	0	220	44	14	10	30	1.79
56958636--56958666	12	2.7	12	95	5	55	22	0	3	74	0.96
56959957--56959995	19	2.1	19	95	0	69	51	10	10	28	1.68
56964817--56964846	8	3.8	8	95	0	51	33	13	0	53	1.40
56968240--56968659	209	2.0	210	92	3	695	33	17	20	28	1.96
56969808--56969926	62	1.9	61	84	1	157	35	7	5	51	1.55
56972215--56972252	14	2.7	14	88	8	51	36	2	0	60	1.11
56977356--56977396	10	4.0	10	87	3	55	36	12	21	29	1.90
56985996--56986030	17	2.1	17	94	0	61	31	11	2	54	1.51
56986411--56986741	147	2.3	148	82	8	414	42	3	10	42	1.58
56986691--56986740	23	2.2	23	85	7	66	54	0	10	36	1.34
56995647--56995685	20	2.0	20	85	5	53	38	23	12	25	1.90
57001007--57001045	11	3.9	10	80	12	53	69	0	2	28	1.02
57001068--57001109	19	2.2	19	87	8	59	54	0	11	33	1.37
57002211--57002246	5	7.2	5	87	12	56	77	0	2	19	0.88
57003048--57003314	131	2.1	129	88	3	396	24	25	19	30	1.98
57003119--57003337	44	5.0	44	72	6	149	25	25	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57003275--57003385	46	2.4	46	83	4	127	27	23	21	27	1.99
57004146--57004529	46	8.6	45	73	10	259	28	23	20	28	1.99
57004191--57004441	44	5.6	44	74	10	179	29	23	20	26	1.99
57004197--57004530	134	2.5	130	88	5	485	28	22	20	27	1.99
57004148--57004441	90	3.3	89	72	8	256	28	23	20	27	1.99
57004192--57004663	134	3.6	129	80	8	431	27	22	20	29	1.98
57005916--57005954	13	3.0	13	84	0	60	15	20	0	64	1.30
57006905--57006939	18	1.9	18	88	0	52	14	8	5	71	1.29
57006967--57007018	12	4.3	12	82	0	50	13	9	5	71	1.30
57006895--57007031	73	1.9	73	83	11	183	10	11	4	72	1.24
57011190--57011228	11	3.9	10	80	12	53	69	0	2	28	1.02
57012394--57012429	5	7.2	5	87	12	56	77	0	2	19	0.88
57014208--57014554	42	8.3	42	86	0	460	21	17	23	37	1.94
57015360--57015647	150	1.9	147	85	6	393	39	4	11	45	1.59
57015357--57015664	147	2.1	145	83	7	390	38	3	11	46	1.58
57015635--57015679	22	2.1	21	84	12	56	40	2	6	51	1.41
57018294--57018322	5	5.8	5	100	0	58	82	0	17	0	0.66
57033734--57034302	69	8.3	69	89	0	852	44	20	8	26	1.80
57033832--57034298	24	20.3	22	65	21	106	44	20	8	26	1.79
57033936--57034035	22	4.4	23	70	5	78	42	21	13	24	1.88
57033942--57034046	23	4.7	23	67	16	69	42	20	11	24	1.85
57033734--57034298	275	2.1	276	90	0	889	44	20	8	26	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57035105--57035214	40	2.7	40	88	1	148	37	21	18	22	1.94
57037454--57037489	7	5.1	7	89	0	54	75	0	8	16	1.04
57055945--57055969	5	5.0	5	100	0	50	80	0	20	0	0.72
57057601--57057722	45	2.7	45	81	5	131	25	17	16	40	1.89
57062976--57063101	63	2.0	63	93	0	216	17	22	14	46	1.84
57064961--57064999	18	2.1	19	90	4	62	53	23	12	10	1.69
57065649--57065761	37	3.1	36	76	7	95	42	15	15	26	1.87
57073551--57073584	10	3.3	10	91	4	50	73	2	5	17	1.16
57074609--57074670	29	2.1	29	93	0	106	24	11	14	50	1.75
57074618--57074675	29	2.0	29	96	0	107	24	13	15	46	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210