genome.fa.s3.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  91  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31391435--31391483	11	4.4	11	89	5	80	71	2	8	18	1.21
31391450--31391598	74	2.0	75	98	1	291	63	4	9	22	1.41
31391534--31391570	19	1.9	19	88	0	56	70	0	8	21	1.13
31391532--31391557	11	2.4	11	100	0	52	76	0	7	15	0.99
31400350--31400426	30	2.6	30	85	2	93	20	27	24	27	1.99
31400565--31400612	10	5.0	10	77	10	55	27	39	2	31	1.68
31400563--31400612	9	5.3	9	80	4	55	26	40	2	32	1.67
31414423--31414476	27	2.0	28	92	3	92	25	29	22	22	1.99
31414347--31415035	103	6.7	103	98	0	1254	32	26	19	21	1.97
31414526--31414579	27	2.0	28	92	3	92	27	29	22	20	1.98
31415098--31415131	11	2.8	12	91	8	52	35	8	11	44	1.72
31419923--31419963	20	2.0	20	85	4	55	63	19	0	17	1.31
31426490--31426528	7	5.6	7	93	0	69	30	0	10	58	1.31
31426489--31426528	21	1.9	21	100	0	80	32	0	10	57	1.32
31427691--31427738	25	1.9	25	95	0	87	45	0	12	41	1.42
31427646--31427779	70	1.9	71	87	4	200	41	1	11	45	1.50
31427773--31427873	29	3.5	29	94	0	175	43	26	1	27	1.66
31428054--31428147	46	2.0	46	95	0	170	43	9	3	43	1.53
31428119--31428177	30	2.0	30	83	6	75	45	11	5	37	1.63
31428092--31428306	76	2.8	76	100	0	430	43	9	4	42	1.57
31428195--31428253	30	2.0	30	83	6	75	45	11	5	37	1.63
31431311--31431662	126	2.8	125	91	0	553	33	21	15	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31435260--31435327	30	2.2	31	89	5	111	23	19	36	20	1.95
31437664--31437755	33	2.7	35	76	5	98	25	22	19	32	1.97
31439117--31439171	26	2.0	28	82	6	69	69	7	3	20	1.28
31442546--31442665	40	3.0	40	85	2	161	23	22	6	47	1.74
31445851--31445893	18	2.4	18	88	0	59	37	18	9	34	1.83
31450200--31450225	12	2.2	12	100	0	52	26	0	7	65	1.20
31451735--31451854	33	3.8	32	72	14	106	48	10	16	24	1.78
31463125--31463748	41	15.2	41	98	0	1203	29	21	26	22	1.99
31468047--31468156	57	1.9	57	94	3	195	30	14	20	33	1.93
31472589--31472971	37	10.4	37	96	2	702	24	19	16	39	1.91
31480278--31480399	65	1.9	65	100	0	244	11	23	28	36	1.90
31481861--31481946	6	13.3	7	88	6	73	27	0	1	70	0.94
31481870--31481946	3	26.7	3	93	5	124	28	0	1	70	0.96
31483351--31483678	164	2.0	165	99	0	649	42	18	10	28	1.83
31484529--31484614	6	13.3	7	88	6	73	27	0	1	70	0.94
31484538--31484614	3	26.7	3	93	5	124	28	0	1	70	0.96
31488075--31488137	31	2.0	33	84	6	85	15	6	4	73	1.21
31489175--31489232	22	2.6	22	83	0	80	32	10	17	39	1.83
31490367--31490400	17	2.0	17	88	0	50	44	8	0	47	1.34
31491504--31491546	13	3.3	12	87	9	50	41	0	6	51	1.29
31492626--31492723	27	3.6	27	83	0	133	21	28	24	25	1.99
31492676--31492750	14	5.4	14	73	13	57	25	32	22	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31492740--31492771	14	2.3	14	94	0	55	15	34	25	25	1.95
31492782--31492826	16	2.8	16	80	12	65	26	20	24	28	1.99
31510025--31510050	5	5.2	5	100	0	52	38	19	19	23	1.93
31510691--31510750	30	2.0	31	86	3	86	40	0	40	20	1.52
31510903--31510939	9	4.1	9	92	0	65	29	10	13	45	1.77
31539386--31539472	23	3.7	23	77	10	79	57	10	4	27	1.51
31539604--31539641	19	2.0	20	84	5	51	63	7	0	28	1.23
31540930--31540967	20	2.0	20	90	10	62	18	0	5	76	0.97
31541706--31541979	44	6.3	44	71	13	154	29	25	18	25	1.98
31541303--31541980	218	3.1	218	88	3	1010	29	26	17	26	1.98
31544349--31544406	13	4.5	13	74	20	50	8	5	6	79	1.06
31545113--31545172	29	2.1	29	93	0	102	38	6	16	38	1.75
31549174--31549260	23	3.7	23	77	10	79	57	10	4	27	1.51
31549382--31549430	20	2.5	19	86	3	62	65	6	0	28	1.16
31558530--31558573	19	2.3	19	96	0	79	29	6	25	38	1.81
31570802--31570874	36	2.0	37	97	2	139	21	17	10	49	1.78
31571575--31571808	50	4.6	50	82	3	189	26	21	28	23	1.99
31571628--31571808	50	3.6	50	84	0	227	25	22	30	21	1.99
31572464--31572509	21	2.2	20	85	7	65	50	8	4	36	1.53
31572469--31572509	21	2.0	21	95	0	73	53	9	2	34	1.47
31581957--31582043	40	2.2	40	87	0	120	32	8	19	40	1.81
31581957--31582020	19	3.3	19	72	23	60	29	6	20	43	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31582205--31582685	45	10.9	45	80	8	450	23	17	18	41	1.90
31582414--31582488	33	2.3	33	90	0	123	24	17	21	37	1.94
31582480--31582508	6	4.8	6	100	0	58	17	17	17	48	1.82
31582447--31582596	51	3.1	49	84	6	191	21	18	18	42	1.90
31582324--31582580	129	2.0	123	85	5	336	21	17	19	40	1.91
31585394--31585477	35	2.4	35	82	9	100	14	11	32	41	1.82
31588972--31589097	41	3.4	40	66	25	121	34	7	11	46	1.68
31588980--31589123	70	2.0	71	98	1	281	34	8	10	47	1.68
31591923--31592012	42	2.1	41	82	8	101	23	32	31	13	1.93
31597298--31597323	6	4.3	6	100	0	52	50	0	0	50	1.00
31615529--31615559	1	31.0	1	93	0	53	0	96	0	3	0.21
31617061--31617179	2	59.5	2	100	0	238	50	0	0	49	1.00
31629991--31630171	45	4.1	44	77	11	174	34	24	16	23	1.95
31629991--31630171	90	2.0	88	85	6	240	34	24	16	23	1.95
31640161--31640224	30	2.1	30	82	0	83	29	15	21	32	1.95
31642985--31643043	20	3.0	20	82	9	75	47	13	10	28	1.75
31643049--31643143	41	2.3	41	90	1	147	38	12	7	41	1.71
31643082--31643143	20	3.1	20	68	9	63	38	11	6	43	1.66
31643148--31643248	40	2.5	39	77	17	100	35	14	4	44	1.67
31643177--31643304	60	2.1	60	85	2	168	33	14	8	43	1.75
31643148--31643252	20	5.2	20	72	15	83	34	14	4	46	1.65
31643397--31643443	20	2.3	20	81	0	67	36	8	12	42	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31643480--31643537	20	2.9	20	81	0	71	37	18	5	37	1.74
31643589--31643643	20	2.8	20	72	10	58	36	16	5	41	1.71
31643704--31643825	40	3.0	40	87	0	181	41	15	5	36	1.71
31643470--31643829	195	1.8	195	80	5	433	37	19	6	36	1.79
31643714--31643829	20	5.8	20	80	4	126	40	16	5	37	1.71
31643891--31643932	21	2.0	21	86	4	59	47	4	7	40	1.52
31643899--31643943	21	2.2	21	84	4	56	48	6	6	37	1.56
31644108--31644250	20	7.2	20	67	6	85	41	16	8	34	1.78
31644109--31644251	40	3.6	40	75	9	114	41	15	8	34	1.77
31644467--31644528	20	3.0	20	70	11	54	37	14	9	38	1.79
31644565--31644617	20	2.6	22	69	19	53	39	7	3	49	1.49
31646504--31646739	119	2.0	118	85	0	319	30	9	22	38	1.86
31651998--31652099	30	3.1	33	77	17	106	45	0	14	40	1.45
31651965--31652098	65	2.2	61	82	9	164	43	0	13	42	1.49
31652189--31652586	126	3.2	125	88	4	554	36	17	17	27	1.93
31652696--31653473	386	2.0	386	100	0	1556	28	18	20	32	1.96
31656300--31656337	18	2.1	18	95	0	67	42	7	26	23	1.81
31659321--31659386	31	2.1	31	100	0	132	33	31	18	16	1.93
31662065--31662111	24	2.0	24	83	8	60	46	6	0	46	1.28
31670270--31670322	19	2.8	19	83	13	65	30	20	5	43	1.75
31673457--31673514	26	2.2	27	93	3	100	43	18	24	13	1.87
31678104--31678343	44	5.5	44	83	3	259	30	18	20	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31678107--31678343	88	2.7	88	84	0	285	31	18	20	29	1.96
31679781--31679829	22	2.2	21	79	10	53	28	10	2	59	1.41
31679822--31679900	35	2.2	34	79	16	81	22	8	1	67	1.26
31681803--31681846	21	2.1	21	86	0	61	25	6	2	65	1.28
31681916--31681962	21	2.4	21	83	13	57	31	4	2	61	1.27
31681954--31681984	15	2.1	15	100	0	62	38	0	0	61	0.96
31701140--31701216	38	2.0	38	100	0	154	25	12	12	48	1.78
31702114--31702183	22	3.2	22	63	25	58	32	12	27	27	1.93
31709416--31709510	25	3.8	25	77	5	93	25	22	23	29	1.99
31711648--31711687	16	2.5	16	91	0	62	47	2	7	42	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210