genome.fa.s3.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  104  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35241358--35241440	43	1.9	43	92	0	139	38	19	9	32	1.84
35246397--35246514	45	2.6	45	78	2	121	44	18	15	22	1.87
35248376--35248409	17	1.9	18	94	5	61	44	2	0	52	1.16
35255102--35255137	17	2.1	17	89	5	54	19	2	11	66	1.35
35259323--35259410	44	2.0	44	84	13	117	37	23	5	32	1.79
35259392--35259462	16	4.4	16	78	7	81	30	19	5	43	1.74
35264075--35264139	32	2.0	32	90	0	103	36	18	9	35	1.83
35278402--35278443	21	2.0	21	81	9	50	42	11	7	38	1.69
35278773--35278984	105	2.0	105	97	1	399	30	28	8	32	1.88
35281556--35281606	24	2.1	24	92	0	84	19	13	5	60	1.53
35285426--35285540	53	2.1	54	93	1	196	24	18	12	45	1.83
35285479--35286015	105	5.1	106	80	6	493	29	19	16	34	1.94
35285960--35286213	54	4.5	55	66	18	164	28	16	25	29	1.97
35285925--35286259	171	2.0	170	95	1	609	30	17	23	28	1.97
35286132--35286279	54	2.8	54	78	7	169	27	17	25	30	1.97
35289248--35289430	63	2.9	63	86	4	235	33	25	22	18	1.96
35290902--35290927	12	2.2	12	100	0	52	84	0	0	15	0.62
35292731--35292883	44	3.5	44	79	5	159	27	18	22	31	1.97
35292757--35293212	44	10.0	43	68	17	149	27	20	19	31	1.97
35292894--35292993	50	2.0	50	84	0	128	30	20	19	31	1.96
35292910--35293128	94	2.3	94	83	3	289	27	20	19	32	1.96
35293086--35293212	44	2.9	44	81	4	157	29	22	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35293472--35293565	29	3.2	29	82	11	113	38	22	1	38	1.61
35293473--35293557	28	3.0	28	83	6	100	35	23	1	40	1.63
35294584--35294620	19	1.9	19	100	0	74	35	10	10	43	1.75
35294623--35294711	19	4.7	20	73	17	75	33	15	8	41	1.79
35294664--35294724	20	3.1	18	75	15	50	37	13	9	39	1.77
35294829--35295043	17	12.2	17	71	14	143	30	13	11	44	1.79
35294829--35294994	71	2.4	71	88	1	253	31	12	10	45	1.76
35294829--35295078	35	7.1	35	71	12	115	32	13	10	43	1.78
35294829--35295084	17	14.7	16	68	16	102	32	13	10	43	1.78
35302947--35303885	75	12.3	75	82	7	984	26	16	21	35	1.95
35304020--35304095	29	2.6	30	76	19	79	40	17	2	39	1.63
35304799--35304841	19	2.3	18	85	14	61	83	0	16	0	0.64
35304799--35304841	14	3.2	14	83	6	54	83	0	16	0	0.64
35305340--35305486	18	8.3	18	70	10	115	30	12	11	44	1.78
35305340--35305478	17	7.9	17	72	10	109	28	13	11	46	1.78
35305379--35305486	53	2.0	54	83	5	139	26	13	12	47	1.78
35305393--35305486	35	2.7	36	83	3	111	30	14	11	42	1.82
35305594--35305724	35	3.7	37	77	13	150	28	16	11	44	1.82
35305200--35305684	250	1.9	251	94	0	864	32	14	14	39	1.85
35305590--35305748	36	4.5	36	78	12	161	29	15	10	44	1.80
35305590--35305805	17	12.2	18	67	13	110	30	15	10	43	1.81
35305590--35305751	71	2.3	71	88	2	254	30	14	10	43	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35305700--35305805	36	3.0	34	77	13	90	27	16	10	45	1.80
35318963--35319017	3	18.3	3	100	0	110	67	0	0	32	0.91
35323667--35323706	14	3.1	12	89	10	53	10	12	7	70	1.35
35325055--35325094	14	3.1	12	89	10	53	10	12	7	70	1.35
35325606--35325630	12	2.1	12	100	0	50	24	8	0	68	1.16
35327294--35327355	27	2.3	26	78	13	72	45	1	14	38	1.55
35328031--35328094	29	2.2	28	91	2	101	68	0	0	31	0.90
35329395--35329486	28	3.2	28	81	9	107	33	15	4	46	1.65
35329395--35329465	28	2.5	29	88	4	108	35	14	4	46	1.64
35329701--35329740	12	3.3	12	86	10	55	85	7	5	2	0.83
35330005--35330050	16	3.0	16	84	6	60	71	0	28	0	0.86
35329992--35330069	28	2.8	28	83	11	90	67	0	32	0	0.90
35330142--35330211	14	4.9	15	77	18	62	78	0	21	0	0.75
35330141--35330216	26	2.9	25	79	11	82	80	0	19	0	0.72
35330146--35330216	23	3.1	23	77	16	76	80	0	19	0	0.72
35330141--35330215	9	8.4	9	77	8	66	80	0	20	0	0.72
35331324--35331362	21	1.9	20	84	5	51	51	25	2	20	1.60
35336920--35337175	104	2.5	104	81	1	289	29	19	15	34	1.93
35341199--35341257	28	2.1	29	83	3	75	23	18	13	44	1.86
35342049--35342085	14	2.7	13	88	12	56	56	0	10	32	1.34
35342052--35342077	7	3.7	7	100	0	52	61	0	11	26	1.30
35351772--35351882	54	2.1	53	83	8	138	47	0	9	41	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35351715--35351942	121	1.9	122	98	1	440	44	1	12	41	1.52
35361305--35361384	26	3.0	26	78	3	106	45	6	6	42	1.54
35361304--35361384	27	3.0	27	75	10	103	45	6	6	41	1.54
35361305--35361348	15	3.2	15	69	24	51	47	4	2	45	1.35
35363421--35363446	7	3.7	7	100	0	52	26	0	15	57	1.38
35364668--35366267	21	74.2	22	79	10	1472	45	28	0	26	1.57
35364670--35366312	63	25.8	64	81	9	1682	45	28	0	25	1.57
35364668--35366312	42	38.8	42	80	9	1661	45	28	0	25	1.57
35365639--35365716	27	3.1	27	65	25	62	47	26	1	24	1.60
35366265--35366312	22	2.2	22	96	0	87	47	31	0	20	1.50
35366320--35366704	114	3.4	114	95	0	662	41	11	7	40	1.69
35369534--35369926	124	3.2	124	92	0	669	29	21	19	29	1.97
35370300--35370422	3	41.0	3	74	9	99	60	4	4	30	1.36
35373542--35373596	24	2.3	24	83	0	65	32	25	27	14	1.95
35373622--35373720	26	3.8	26	81	1	119	32	22	27	18	1.97
35373499--35373737	26	9.6	26	68	11	83	33	21	25	18	1.96
35387030--35387092	11	5.9	11	80	14	78	41	1	0	57	1.08
35387000--35387092	41	2.2	41	88	5	134	38	3	0	58	1.15
35387502--35387534	17	1.9	17	88	11	50	39	3	0	57	1.14
35405282--35405760	44	11.0	44	70	10	254	29	21	22	26	1.99
35405324--35405571	134	1.9	133	81	2	300	28	21	23	26	1.99
35407582--35407614	17	1.9	17	88	11	50	39	3	0	57	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35415301--35415785	45	10.8	45	73	9	335	32	16	20	30	1.95
35415574--35415777	44	4.6	44	76	6	178	32	17	19	30	1.95
35415304--35415779	89	5.3	89	73	12	362	32	16	20	31	1.95
35419302--35419330	12	2.3	13	94	5	51	82	13	3	0	0.79
35422280--35422319	19	2.1	19	90	9	64	45	5	5	45	1.47
35429546--35429598	26	2.0	26	100	0	106	30	22	3	43	1.71
35432745--35432814	30	2.3	31	82	2	88	40	14	11	34	1.82
35438586--35438818	60	3.9	59	75	6	207	39	4	11	44	1.60
35438676--35438753	30	2.6	30	84	6	97	43	6	7	42	1.59
35438707--35438787	29	2.7	29	76	12	76	44	4	6	44	1.50
35440017--35440066	25	2.0	26	96	4	93	28	2	0	70	0.99
35440013--35440060	7	6.3	7	77	17	51	20	2	0	77	0.88
35440019--35440073	26	2.2	25	86	3	74	30	1	0	67	1.01
35440633--35440680	24	2.0	25	87	4	71	37	6	6	50	1.53
35440856--35440904	3	16.3	3	100	0	98	67	0	0	32	0.91
35441114--35441150	17	2.2	17	90	4	58	24	2	37	35	1.70
35441386--35441420	18	2.0	17	88	5	52	54	0	0	45	0.99
35447012--35447199	31	6.1	31	100	0	376	38	38	3	19	1.68
35450848--35450913	27	2.4	27	76	19	64	51	4	4	39	1.43
35453650--35453707	23	2.4	25	77	19	68	29	24	22	24	1.99
35457585--35457636	20	2.5	20	81	12	52	44	11	5	38	1.65
35457585--35457697	19	5.8	19	76	18	90	38	13	8	39	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35458646--35458674	2	14.5	2	100	0	58	48	0	0	51	1.00
35458957--35459006	6	8.5	6	95	2	66	42	0	8	50	1.32
35458957--35459006	2	25.5	2	79	4	57	42	0	8	50	1.32
35459384--35459414	16	1.9	16	93	0	53	48	41	3	6	1.45
35483148--35483274	44	3.0	42	84	3	155	25	17	25	31	1.97
35483161--35483320	43	3.7	43	75	12	150	24	17	26	31	1.97
35492623--35492693	15	4.6	14	72	23	54	33	2	0	63	1.09
35492622--35492723	35	2.9	35	95	2	179	33	2	0	63	1.09
35494126--35494170	18	2.5	17	83	16	56	24	2	0	73	0.95
35494100--35494220	49	2.5	49	77	6	138	38	0	2	58	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210