genome.fa.s3.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  94  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32393356--32393477	57	2.1	57	84	0	163	51	17	4	26	1.65
32393512--32393762	37	7.1	36	75	17	179	56	17	2	23	1.52
32393521--32393840	12	24.2	13	69	20	123	55	17	3	23	1.56
32393521--32393726	65	3.1	65	83	6	222	57	16	1	23	1.47
32393521--32393801	9	30.6	9	68	20	97	56	17	2	23	1.53
32393752--32393830	35	2.3	33	77	12	79	53	16	5	25	1.63
32397725--32397761	11	3.2	12	88	7	51	64	5	0	29	1.15
32408454--32408562	20	5.2	20	71	14	76	13	22	25	37	1.92
32408453--32408557	41	2.5	42	78	4	113	14	22	24	38	1.92
32409024--32409088	28	2.3	28	81	2	67	38	10	21	29	1.87
32410336--32410390	24	2.3	24	100	0	110	43	3	5	47	1.44
32411828--32411903	39	1.9	39	82	12	93	47	14	19	18	1.83
32411996--32412122	48	2.6	48	85	4	184	16	28	9	45	1.78
32412820--32412845	11	2.4	11	100	0	52	26	0	11	61	1.30
32414313--32414364	26	2.0	26	85	7	70	44	3	1	50	1.31
32415534--32415589	20	2.5	22	83	11	62	58	3	0	37	1.15
32415950--32416057	9	12.2	9	78	9	80	47	20	0	32	1.51
32415950--32416053	43	2.4	44	90	4	165	47	20	0	32	1.50
32427255--32427303	25	1.9	25	84	12	64	40	12	12	34	1.80
32434522--32434546	11	2.3	11	100	0	50	28	0	8	64	1.22
32439351--32439389	20	2.0	20	85	10	53	28	12	23	35	1.91
32447619--32448538	460	2.0	460	94	1	1621	26	18	22	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32456201--32456287	35	2.4	36	84	7	115	41	31	14	12	1.84
32471034--32471075	21	2.0	21	95	0	75	28	7	33	30	1.84
32473079--32473123	15	3.1	14	81	9	54	71	4	22	2	1.15
32473296--32473340	18	2.5	19	75	13	51	22	40	0	37	1.54
32479546--32479578	17	2.1	16	88	11	50	57	15	6	21	1.59
32481628--32481666	18	2.2	18	86	9	53	25	15	0	58	1.37
32484994--32485048	20	2.8	20	88	2	76	40	0	7	52	1.29
32485857--32485908	16	3.2	16	72	0	50	57	3	23	15	1.54
32486041--32486079	20	2.0	20	94	0	69	46	7	17	28	1.76
32488850--32488889	18	2.2	19	82	13	57	57	0	7	35	1.27
32489050--32489100	3	17.7	3	76	8	52	62	0	1	35	1.06
32490581--32490844	128	2.1	127	81	2	296	26	20	22	30	1.98
32490853--32491012	50	3.2	50	70	7	144	25	23	21	29	1.99
32490882--32491061	50	3.6	49	71	5	146	23	24	23	28	2.00
32491264--32491427	88	1.9	88	88	0	247	27	28	17	26	1.98
32491279--32491415	45	3.1	45	68	8	118	28	29	16	25	1.97
32496174--32496231	26	2.3	26	85	5	75	62	3	17	17	1.47
32496193--32496256	27	2.4	27	81	5	67	60	9	12	17	1.57
32503494--32503561	26	2.6	26	83	2	73	50	2	10	36	1.52
32506899--32506945	11	4.2	11	81	13	51	23	0	6	70	1.10
32506869--32507017	65	2.3	64	80	7	167	26	1	13	59	1.43
32510973--32511034	32	1.9	32	96	0	115	40	12	1	45	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32519243--32519337	21	4.5	21	80	5	84	24	0	38	36	1.56
32519243--32519300	7	8.3	7	80	0	62	20	0	41	37	1.53
32519503--32519543	14	2.9	14	82	13	57	26	2	36	34	1.70
32521968--32522096	67	1.9	67	80	9	147	45	7	3	43	1.48
32522325--32522443	35	3.2	36	78	16	129	54	12	1	31	1.48
32522313--32522421	35	3.0	35	78	17	132	55	11	1	31	1.47
32522454--32522585	9	14.8	9	75	10	119	46	18	1	32	1.59
32522454--32522589	25	5.2	25	72	15	96	47	19	1	32	1.58
32522454--32522585	34	3.7	34	77	9	138	46	18	1	32	1.59
32528493--32528564	21	3.4	21	92	0	117	37	18	41	2	1.65
32528980--32529076	42	2.3	42	80	8	108	26	16	23	32	1.96
32529005--32529239	42	5.5	41	78	8	213	28	19	20	32	1.96
32529004--32529229	85	2.7	83	78	13	226	28	19	20	31	1.97
32528997--32529239	127	1.9	129	83	5	323	28	19	20	32	1.97
32529355--32529500	72	2.0	72	95	0	265	34	19	21	25	1.96
32532844--32532888	5	9.8	5	85	9	53	20	0	0	80	0.72
32532844--32532888	13	3.3	15	76	20	53	20	0	0	80	0.72
32537944--32538096	7	22.3	6	90	7	85	72	12	0	15	1.12
32537960--32538096	7	19.1	7	97	0	238	72	13	0	14	1.13
32538952--32538977	12	2.2	12	100	0	52	69	0	15	15	1.20
32538946--32538998	20	2.8	18	89	10	88	77	0	11	11	1.00
32538948--32538989	8	5.8	8	78	21	56	76	0	11	11	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32540178--32541151	88	11.1	88	99	0	1903	26	23	26	23	2.00
32549152--32549186	17	2.1	17	88	0	52	2	40	37	20	1.67
32554228--32554489	103	2.6	98	86	5	346	35	15	17	30	1.91
32554228--32554489	98	2.6	104	86	4	358	35	15	17	30	1.91
32554486--32554894	107	3.8	108	76	11	367	31	11	14	42	1.82
32554655--32554707	23	2.3	23	96	0	97	26	3	15	54	1.57
32554701--32554911	112	1.8	112	87	7	309	32	12	16	39	1.85
32555788--32555843	24	2.3	24	96	0	103	57	0	3	39	1.16
32556403--32556459	1	57.0	1	85	0	78	92	7	0	0	0.37
32556971--32557015	22	2.0	24	86	8	67	53	4	2	40	1.33
32564485--32564523	20	2.0	20	84	0	51	43	2	12	41	1.56
32564796--32564831	12	3.1	12	92	4	56	25	2	2	69	1.15
32564785--32564847	23	2.7	24	73	11	76	28	4	4	61	1.36
32574737--32574770	16	2.1	17	88	5	52	79	2	8	8	1.03
32574986--32575043	6	9.3	6	85	14	82	79	3	1	15	0.95
32578485--32578759	25	11.4	25	82	12	317	22	24	16	37	1.94
32579436--32579460	2	12.5	2	100	0	50	48	0	0	52	1.00
32579469--32579500	16	2.0	16	100	0	64	25	6	18	50	1.70
32588242--32588321	6	13.3	6	94	0	97	57	6	1	35	1.32
32589067--32589105	16	2.4	16	86	0	51	20	7	0	71	1.10
32589458--32589491	7	4.9	7	100	0	68	58	11	0	29	1.33
32589455--32589501	10	4.6	10	82	15	60	61	8	0	29	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32589455--32589501	21	2.3	20	86	13	69	61	8	0	29	1.25
32596716--32596748	17	2.0	16	94	5	57	39	36	0	24	1.56
32616161--32616208	25	1.9	25	95	0	87	33	12	22	31	1.91
32622458--32622497	15	2.7	15	100	0	80	22	20	37	20	1.94
32627136--32627175	18	2.3	18	86	4	55	70	2	0	27	1.01
32627158--32627198	15	2.7	15	85	7	57	60	2	0	36	1.10
32655025--32655068	17	2.4	18	85	11	54	29	0	0	70	0.88
32656102--32656126	13	1.9	13	100	0	50	8	0	24	68	1.16
32667641--32667678	20	1.9	20	88	0	58	60	5	0	34	1.19
32670477--32670710	34	6.9	34	70	8	147	43	14	11	30	1.81
32670479--32670709	68	3.4	67	86	3	286	43	14	11	30	1.81
32670465--32670710	102	2.4	101	77	5	246	43	14	11	30	1.81
32680339--32680383	19	2.4	19	92	0	72	17	17	26	37	1.93
32682952--32683036	41	2.1	41	88	4	127	16	24	20	38	1.92
32683964--32684136	85	2.0	86	98	1	339	63	2	9	24	1.36
32684145--32684170	12	2.2	12	100	0	52	65	0	34	0	0.93
32684506--32684543	20	1.9	20	84	10	51	52	0	15	31	1.43
32685052--32685149	40	2.4	39	85	6	108	26	13	25	34	1.93
32685066--32685149	41	2.1	40	90	2	132	26	13	23	36	1.91
32686787--32686826	20	2.0	21	85	5	55	27	15	5	52	1.63
32690731--32690756	3	8.7	3	100	0	52	34	0	0	65	0.93
32690952--32690977	11	2.4	11	100	0	52	65	15	11	7	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32701888--32702010	35	3.5	35	82	5	124	39	31	13	15	1.85
32701910--32702012	35	3.0	35	84	4	129	36	31	14	17	1.90
32702939--32702963	10	2.5	10	100	0	50	24	0	8	68	1.16
32704263--32704304	16	2.7	16	81	3	50	45	16	4	33	1.69
32706211--32706248	15	2.7	14	88	11	60	68	5	0	26	1.11
32706465--32706504	18	2.1	18	86	9	53	27	2	10	60	1.42
32709117--32709161	21	2.1	21	83	0	54	15	33	22	28	1.95
32715450--32715537	27	3.3	26	74	13	81	22	17	15	44	1.86
32715450--32715563	27	4.3	25	78	8	77	23	16	15	43	1.86
32727124--32727171	18	2.7	18	73	20	55	45	2	12	39	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210