genome.fa.s3.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  106  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35845255--35845374	23	5.2	23	89	0	186	30	25	21	21	1.98
35849014--35849143	43	3.0	42	79	12	147	30	26	20	21	1.98
35852010--35852052	18	2.4	18	84	7	52	41	41	2	13	1.57
35852175--35852250	9	8.4	9	86	5	100	26	10	21	42	1.85
35856704--35856809	37	2.7	38	74	8	99	24	16	23	35	1.94
35856705--35856839	40	3.4	39	72	11	123	24	17	25	33	1.96
35858477--35858523	2	23.5	2	95	0	85	51	46	0	2	1.13
35859514--35859563	23	2.2	23	82	7	57	38	18	22	22	1.94
35866207--35866251	20	2.2	20	88	0	63	26	15	13	44	1.83
35879451--35879494	21	2.1	22	84	16	67	63	2	0	34	1.07
35879591--35879661	35	2.2	32	85	12	92	33	15	21	29	1.94
35879600--35879669	35	2.0	35	100	0	140	31	14	22	31	1.94
35880987--35881012	6	4.3	6	100	0	52	69	0	0	30	0.89
35881026--35881083	26	2.3	26	85	5	75	51	3	1	43	1.28
35881191--35881360	90	1.9	90	82	4	218	37	18	9	34	1.83
35881497--35881530	9	3.7	9	88	4	50	64	0	0	35	0.94
35881497--35881531	10	3.7	10	88	11	56	62	0	0	37	0.95
35881496--35881551	19	2.9	19	77	17	62	62	0	1	35	1.06
35881507--35881567	10	6.3	10	81	7	63	67	0	3	29	1.07
35881498--35881568	28	2.5	29	81	4	83	66	0	2	30	1.06
35881987--35882033	21	2.3	20	89	7	69	34	4	0	61	1.15
35881987--35882061	9	7.6	10	76	10	66	29	6	0	64	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35882096--35882135	11	4.2	10	78	21	50	20	0	0	80	0.72
35882075--35882134	18	3.3	18	79	11	70	25	0	0	75	0.81
35881998--35882135	28	4.8	29	75	10	106	27	3	0	68	1.11
35882293--35882628	177	1.9	172	80	9	383	35	9	17	38	1.82
35882293--35882628	89	3.8	88	80	8	355	35	9	17	38	1.82
35887806--35889262	146	10.0	146	83	2	1737	27	20	14	37	1.91
35898338--35898394	20	2.9	19	85	10	80	66	3	0	29	1.08
35903873--35904320	225	2.0	224	97	1	844	26	12	24	37	1.91
35910196--35910230	16	2.2	16	94	0	61	20	31	5	42	1.75
35910252--35910305	16	3.4	16	89	0	81	25	35	3	35	1.74
35923158--35923189	12	2.7	12	100	0	64	0	40	34	25	1.56
35934974--35935016	3	14.3	3	90	0	68	30	2	2	65	1.18
35944361--35944385	13	1.9	13	100	0	50	48	12	0	40	1.40
35946384--35946418	5	7.2	5	87	6	54	2	17	0	80	0.84
35949436--35949505	21	3.4	20	77	20	65	55	1	1	41	1.17
35949450--35949506	20	2.8	19	79	10	60	56	0	1	42	1.10
35949694--35949751	21	2.8	20	72	17	55	53	3	1	41	1.28
35959234--35959270	7	5.3	7	100	0	74	43	27	0	29	1.55
35964719--35964987	134	2.0	135	99	0	531	40	15	5	39	1.70
35965005--35965057	21	2.5	21	96	0	97	30	37	9	22	1.86
35965289--35965317	15	1.9	15	100	0	58	75	3	13	6	1.13
35973078--35973111	3	11.3	3	93	0	59	64	2	0	32	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35975860--35975917	22	2.8	21	74	25	61	67	5	0	27	1.12
35982679--35982715	17	2.1	18	85	14	51	56	0	2	40	1.13
35982679--35982746	22	3.0	22	73	16	59	52	0	1	45	1.09
35987355--35987394	6	6.5	6	88	5	62	35	2	35	27	1.71
35987355--35987394	19	2.2	18	90	4	62	35	2	35	27	1.71
36005133--36005210	39	2.0	39	100	0	156	38	7	25	28	1.83
36006645--36006672	12	2.3	12	100	0	56	14	10	28	46	1.78
36016002--36016036	2	17.5	2	100	0	70	48	0	0	51	1.00
36016847--36017099	124	2.0	124	96	0	470	33	13	17	35	1.89
36019811--36019972	40	4.1	40	100	0	324	48	7	22	22	1.75
36026367--36026449	34	2.4	34	79	0	94	30	28	14	26	1.95
36030689--36030780	17	5.4	17	72	10	62	32	32	13	21	1.92
36030689--36030772	34	2.5	34	80	0	105	32	32	14	21	1.93
36039947--36039981	9	3.9	9	84	0	52	40	11	28	20	1.87
36046006--36046054	21	2.3	21	86	10	64	73	4	2	20	1.10
36058311--36058353	5	8.4	5	87	5	50	20	4	2	72	1.14
36082956--36083014	3	19.7	3	92	0	100	64	1	1	32	1.13
36083812--36083863	26	2.0	25	96	3	95	40	7	17	34	1.78
36088233--36088322	44	2.0	44	91	4	146	33	7	25	33	1.85
36091874--36091898	5	5.0	5	100	0	50	80	0	0	20	0.72
36091969--36092007	19	2.1	19	85	0	51	69	2	7	20	1.26
36099407--36099663	129	2.0	129	92	0	433	33	13	19	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36105217--36105244	9	3.1	9	100	0	56	57	10	0	32	1.33
36105153--36105464	68	4.6	68	98	0	601	47	8	4	40	1.54
36105285--36105312	9	3.1	9	100	0	56	57	10	0	32	1.33
36105353--36105380	9	3.1	9	100	0	56	57	10	0	32	1.33
36105453--36105494	16	2.6	16	92	0	66	42	7	2	47	1.43
36105468--36105523	23	2.5	23	82	2	69	44	1	1	51	1.22
36107076--36107113	20	1.9	20	84	10	51	63	0	15	21	1.31
36108405--36108446	21	2.0	21	85	0	57	23	30	23	21	1.99
36109932--36109991	21	2.9	21	87	0	93	51	18	20	10	1.74
36111703--36111733	9	3.4	9	90	0	53	38	22	12	25	1.90
36114387--36114411	12	2.1	12	100	0	50	20	24	24	32	1.98
36116768--36116794	4	6.8	4	100	0	54	22	0	0	77	0.76
36143774--36143799	4	6.5	4	100	0	52	26	0	0	73	0.84
36146661--36146705	3	15.3	3	86	13	67	64	0	0	35	0.94
36146931--36146969	19	2.0	21	85	10	55	69	5	10	15	1.34
36147131--36147207	19	3.7	21	80	13	77	41	16	5	36	1.71
36147131--36147188	22	2.6	22	84	7	73	43	17	3	36	1.66
36147144--36147220	19	3.8	19	89	6	91	38	16	7	36	1.78
36147762--36147819	28	2.0	30	83	6	75	68	3	0	27	1.05
36148192--36148247	7	8.0	7	82	6	51	8	0	39	51	1.33
36148190--36148246	14	4.1	14	75	6	62	10	0	38	50	1.37
36148466--36148875	126	3.3	126	91	2	664	32	19	21	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36153449--36153473	7	3.6	7	100	0	50	28	0	12	60	1.32
36153546--36153585	18	2.2	18	90	0	62	20	30	7	42	1.79
36153842--36153889	21	2.3	21	77	0	51	33	31	29	6	1.82
36156550--36156800	123	2.0	124	86	3	344	34	23	12	29	1.92
36158300--36158342	14	3.0	15	80	19	56	53	13	0	32	1.41
36171056--36171089	2	17.5	2	93	6	61	52	0	0	47	1.00
36171682--36171769	41	2.1	41	93	0	149	29	19	20	30	1.97
36172404--36172561	79	2.0	80	80	3	176	37	13	7	40	1.74
36173917--36174008	25	3.6	25	89	1	139	22	29	18	29	1.97
36176020--36176347	94	3.5	95	77	5	288	36	17	18	26	1.94
36179683--36179723	18	2.3	18	84	12	50	19	7	12	60	1.54
36181157--36181208	27	1.9	27	92	0	86	38	26	1	32	1.68
36181417--36181495	29	2.7	29	86	4	104	34	18	3	43	1.69
36181801--36181838	16	2.3	17	95	4	69	76	0	0	23	0.79
36182028--36182063	5	7.2	5	100	0	72	38	41	19	0	1.52
36183114--36183140	13	2.1	13	100	0	54	18	0	14	66	1.25
36184959--36185002	19	2.3	19	100	0	88	22	15	20	40	1.90
36186101--36186144	4	11.2	4	80	4	54	22	25	4	47	1.70
36186091--36186144	27	2.0	27	96	0	99	22	24	7	46	1.77
36186109--36186145	19	1.9	19	94	0	65	21	24	8	45	1.78
36194221--36194593	75	5.0	75	88	1	487	29	17	18	33	1.94
36195223--36195258	14	2.7	13	91	8	63	80	0	2	16	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36195382--36195431	24	2.1	24	85	7	66	76	0	24	0	0.80
36195379--36195433	27	1.9	27	89	10	83	76	0	23	0	0.79
36195379--36195447	23	3.1	22	74	15	70	73	0	24	1	0.91
36199213--36199269	8	6.7	9	73	18	50	26	3	0	70	1.03
36199211--36199268	17	3.4	16	75	13	53	25	3	0	70	1.03
36200422--36200493	27	2.7	27	67	6	65	22	33	31	12	1.91
36200549--36200590	14	3.3	14	75	25	56	64	0	35	0	0.94
36200539--36200628	31	3.0	30	79	11	94	61	0	37	1	1.04
36200548--36200605	20	3.0	20	87	7	75	63	0	36	0	0.94
36200555--36200633	10	7.7	10	72	4	50	65	0	32	1	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210