genome.fa.s3.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  86  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29746532--29746893	88	4.1	88	69	7	248	29	18	22	29	1.97
29748555--29748579	12	2.1	12	100	0	50	24	8	32	36	1.84
29748864--29748897	18	1.9	17	94	5	59	38	8	0	52	1.33
29749213--29749243	15	2.1	15	93	0	53	19	9	6	64	1.45
29749322--29749581	109	2.4	109	92	0	412	30	15	19	34	1.93
29750964--29751008	8	5.1	9	79	15	58	48	0	0	51	1.00
29750965--29751008	18	2.5	17	89	7	70	50	0	0	50	1.00
29750965--29751011	9	5.5	8	82	12	58	48	0	0	51	1.00
29757446--29757508	21	3.1	21	72	19	62	60	1	4	33	1.27
29757460--29757532	30	2.5	29	82	12	87	58	1	4	35	1.25
29757500--29757548	18	2.6	19	83	6	73	59	2	4	34	1.28
29758676--29758713	20	1.9	20	89	10	60	28	0	21	50	1.49
29759590--29759641	24	2.2	24	85	0	68	25	21	13	40	1.89
29759623--29759668	24	1.9	24	86	0	65	28	15	17	39	1.90
29762156--29762199	1	44.0	1	100	0	88	0	0	0	100	0.00
29770585--29770612	2	14.0	2	100	0	56	50	0	0	50	1.00
29773953--29774031	32	2.4	32	89	2	113	15	35	25	24	1.94
29785835--29785874	20	2.0	20	90	0	62	32	17	25	25	1.97
29790330--29790371	18	2.4	17	84	11	50	30	23	16	28	1.96
29791926--29791988	19	3.1	19	75	15	56	41	0	6	52	1.27
29794415--29794441	4	6.8	4	100	0	54	77	0	22	0	0.76
29798403--29798437	12	2.9	12	82	0	52	22	51	20	5	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29799043--29799071	14	2.1	14	93	6	51	41	0	0	58	0.98
29801059--29801100	18	2.4	17	84	11	50	28	0	2	69	1.01
29812562--29812997	44	9.9	44	83	2	480	33	15	20	30	1.94
29814572--29814603	17	1.9	16	93	6	55	21	0	0	78	0.76
29814666--29814706	3	13.7	3	84	0	55	29	4	2	63	1.28
29817174--29817284	41	2.7	41	100	0	222	27	15	19	37	1.92
29822939--29822980	4	10.5	4	89	0	57	42	0	7	50	1.30
29822939--29822980	10	4.2	10	90	0	57	42	0	7	50	1.30
29822939--29822980	6	7.0	6	91	0	57	42	0	7	50	1.30
29826624--29826677	21	2.6	20	77	11	63	66	0	33	0	0.92
29826625--29826669	22	2.1	21	87	4	63	71	0	28	0	0.87
29829559--29829606	24	2.0	24	100	0	96	25	16	25	33	1.96
29830410--29830468	21	3.0	20	80	9	77	30	25	15	28	1.96
29834725--29834818	46	2.0	46	93	0	161	35	8	26	29	1.86
29839615--29839663	21	2.6	18	84	12	62	67	2	2	28	1.13
29840061--29840166	48	2.2	48	86	0	140	21	9	39	29	1.85
29847405--29847443	6	6.5	6	100	0	78	33	48	0	17	1.48
29849815--29850256	126	3.5	125	89	2	636	30	17	22	29	1.97
29860004--29860045	21	2.0	21	90	0	66	45	0	14	40	1.45
29865762--29865855	25	3.8	25	79	8	93	30	15	30	22	1.95
29867195--29867259	32	2.0	32	100	0	130	32	18	30	18	1.95
29868774--29869010	116	2.0	117	99	0	467	38	8	16	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29868983--29869029	22	2.2	22	85	14	64	55	2	0	42	1.12
29880671--29880709	21	1.9	21	89	5	62	25	48	15	10	1.76
29892918--29892995	34	2.3	34	97	0	147	41	15	11	32	1.83
29892965--29893008	21	2.1	21	100	0	88	34	13	13	38	1.84
29894913--29895003	21	4.5	19	76	13	83	46	31	2	19	1.62
29894913--29895003	7	13.3	7	79	6	71	46	31	2	19	1.62
29895131--29895179	20	2.4	21	83	6	66	48	36	0	14	1.44
29895629--29895702	38	1.9	39	88	2	114	32	25	22	18	1.97
29895908--29896105	72	2.8	71	79	6	213	28	24	22	24	2.00
29898104--29898144	17	2.4	18	80	8	50	39	0	12	48	1.41
29907481--29907515	17	2.1	17	89	10	54	82	2	0	14	0.77
29913858--29913907	19	2.4	21	78	21	61	26	0	4	70	1.05
29914942--29914997	19	3.0	19	84	2	60	58	1	0	39	1.08
29916481--29916524	20	2.3	20	84	7	56	59	2	2	36	1.23
29920309--29920523	21	10.3	21	78	5	204	15	21	17	46	1.84
29920308--29920506	42	4.7	42	80	4	231	16	21	16	46	1.84
29922883--29922925	21	2.0	21	86	0	59	39	16	0	44	1.48
29929442--29929514	32	2.5	27	77	18	74	57	2	1	38	1.22
29932459--29932508	19	2.6	20	84	12	61	50	12	6	32	1.64
29946249--29946302	22	2.3	23	82	17	60	68	1	3	25	1.16
29957513--29957543	10	3.2	10	90	9	55	38	12	9	38	1.77
29964278--29964324	25	2.0	23	83	8	58	27	21	6	44	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29968058--29968103	21	2.2	21	92	0	74	73	8	6	10	1.23
29969395--29969466	20	3.7	20	83	5	85	54	6	0	38	1.28
29982053--29982109	16	3.5	15	77	15	60	43	1	0	54	1.10
29982055--29982107	17	3.2	16	82	15	54	43	1	0	54	1.11
29983815--29983857	16	2.7	16	96	0	77	11	16	55	16	1.68
29985159--29985439	106	2.7	106	85	1	375	36	29	12	21	1.90
29998004--29998489	240	2.0	240	99	0	954	31	14	9	44	1.78
29999357--29999437	15	5.4	15	69	16	69	46	7	20	24	1.76
29999353--29999450	30	3.3	30	91	4	135	46	7	21	24	1.76
30001275--30001314	17	2.4	17	95	0	71	32	20	12	35	1.90
30002945--30003017	23	3.3	22	83	9	87	30	28	19	21	1.98
30003071--30003109	18	2.2	17	86	13	53	46	20	0	33	1.51
30008303--30008337	15	2.4	15	90	4	54	48	0	8	42	1.33
30010702--30010754	18	2.9	18	80	2	61	41	45	1	11	1.51
30011194--30011246	26	2.1	25	82	3	61	35	24	18	20	1.95
30013917--30013958	22	1.9	22	85	0	57	35	21	16	26	1.94
30015243--30015281	12	3.2	12	85	0	51	38	10	12	38	1.78
30015250--30015283	12	2.8	13	91	8	54	32	14	14	38	1.87
30016654--30016691	7	5.7	7	90	9	62	76	0	0	23	0.79
30016651--30016702	13	3.9	13	87	9	70	78	0	1	19	0.84
30016654--30016703	20	2.6	19	90	6	75	78	0	2	20	0.86
30016651--30016710	13	4.8	13	76	13	54	78	0	1	20	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30021071--30021108	18	2.1	18	85	9	51	36	0	0	63	0.95
30022420--30022471	16	3.0	16	81	13	59	42	0	32	25	1.55
30022640--30022676	9	4.1	9	92	0	65	29	10	13	45	1.77
30022732--30022768	9	4.1	9	92	0	65	43	21	10	24	1.84
30032691--30032759	38	1.9	37	85	11	99	39	5	0	55	1.24
30040250--30040287	18	2.1	18	85	9	51	15	15	7	60	1.57
30040275--30040375	12	7.9	12	70	14	69	24	12	9	52	1.70
30040318--30040386	24	2.8	24	80	10	77	27	11	10	50	1.70
30040282--30040399	25	4.7	24	76	12	94	24	14	8	52	1.69
30041690--30041724	6	5.8	6	96	0	61	82	0	14	2	0.77
30049084--30049137	27	2.0	28	88	3	83	18	20	29	31	1.96
30049116--30049401	33	7.8	33	65	20	122	19	17	26	35	1.95
30049112--30049396	76	3.8	75	85	2	392	20	17	27	35	1.94
30061717--30062354	344	1.8	345	94	0	1125	29	8	21	39	1.83
30064110--30064153	23	1.9	23	86	9	63	52	13	4	29	1.60
30064222--30064255	14	2.4	14	90	0	50	64	5	5	23	1.38
30065186--30065316	33	4.0	33	87	0	181	19	24	16	40	1.90
30072325--30072373	26	1.9	26	88	12	75	61	4	2	32	1.26
30080871--30080929	21	2.8	20	80	10	66	27	3	6	62	1.36
30084597--30084623	14	1.9	14	100	0	54	22	7	0	70	1.12
30110711--30110882	53	3.3	50	80	12	179	22	11	3	63	1.42
30114156--30114196	10	4.1	10	77	22	50	31	17	0	51	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30116267--30116313	19	2.5	19	75	6	51	59	10	12	17	1.60
30117280--30117310	6	5.2	6	100	0	62	0	51	0	48	1.00
30122728--30122754	3	9.0	3	100	0	54	33	0	0	66	0.92
30124767--30124796	3	10.0	3	92	0	51	63	3	0	33	1.11
30128506--30128549	19	2.4	18	82	17	56	56	2	6	34	1.38
30143852--30143892	18	2.3	18	95	0	73	24	26	24	24	2.00
30147333--30147375	11	3.8	11	80	17	52	65	2	2	30	1.18
30147409--30147452	23	1.9	23	90	0	70	61	4	2	31	1.28
30147413--30147455	11	3.8	11	80	17	52	65	2	2	30	1.18
30148283--30148360	10	7.5	10	74	7	57	61	3	3	30	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210