Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  116  of  210  ( 25174 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38953788--38953824
9
4.1
9
89
0
56
32
10
10
45
1.74
38955958--38956145
56
3.3
56
64
12
155
30
14
14
40
1.86
38955688--38956067
198
1.9
199
89
2
595
33
15
12
39
1.85
38955901--38956240
117
3.0
117
93
5
563
31
14
14
39
1.86
38955592--38956194
315
1.9
308
90
5
953
32
14
13
39
1.84
38955946--38956128
61
3.1
61
61
19
150
33
14
16
35
1.89
38956242--38956266
10
2.5
10
100
0
50
0
8
0
92
0.40
38957945--38957995
21
2.4
22
83
6
61
64
1
3
29
1.22
38962229--38962314
4
20.8
4
78
15
70
75
1
22
1
0.94
38962229--38962314
9
9.3
9
79
15
88
75
1
22
1
0.94
38962229--38962316
42
2.1
41
85
12
117
75
1
22
1
0.94
38963000--38963039
2
20.0
2
94
0
71
50
2
0
47
1.14
38963249--38963351
41
2.5
41
85
1
145
28
20
22
29
1.98
38963537--38963588
16
3.2
16
76
10
61
34
1
25
38
1.67
38966125--38966246
62
2.0
63
83
8
160
33
13
6
46
1.68
38966199--38966276
31
2.6
29
76
9
84
42
15
3
38
1.65
38968563--38968616
25
2.2
26
80
16
69
35
22
24
18
1.96
38968570--38968655
26
3.3
26
80
1
84
39
23
20
16
1.92
38985048--38985078
15
2.1
15
93
0
53
0
41
9
48
1.36
38991983--38992023
18
2.3
18
87
8
57
34
0
0
65
0.93
38998182--38998243
30
2.1
30
100
0
124
29
16
32
22
1.95
39002783--39002832
20
2.5
21
78
18
61
32
10
4
54
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39003269--39004157
444
2.0
443
95
0
1618
26
12
9
51
1.70
39006816--39006867
2
26.0
2
100
0
104
50
0
0
50
1.00
39013386--39013432
24
2.0
23
83
4
58
6
8
6
78
1.08
39013489--39013714
112
2.0
113
98
1
436
42
5
10
41
1.62
39020280--39020331
18
2.9
18
94
0
86
23
15
17
44
1.86
39021930--39022004
3
24.7
3
86
8
107
30
2
1
65
1.15
39023306--39023336
16
1.9
16
93
0
53
9
6
9
74
1.23
39033345--39033398
24
2.3
24
87
3
74
72
1
0
25
0.95
39035210--39035244
3
11.3
3
93
6
61
34
0
0
65
0.93
39036259--39037000
88
8.4
88
96
0
1331
25
22
27
24
2.00
39037025--39037295
51
5.4
51
65
9
178
28
19
25
26
1.99
39036999--39037379
101
3.8
102
90
1
572
26
20
26
26
1.99
39039742--39039787
13
3.8
12
75
18
51
84
10
4
0
0.75
39039743--39039784
23
1.9
21
90
9
66
85
9
4
0
0.72
39040288--39040337
7
7.0
7
82
17
59
70
0
16
14
1.18
39040288--39040337
22
2.3
22
90
10
77
70
0
16
14
1.18
39040288--39040337
15
3.5
15
82
15
61
70
0
16
14
1.18
39041614--39042061
88
5.1
88
93
0
752
26
22
26
25
2.00
39041891--39042026
44
3.1
44
64
8
105
25
25
25
24
2.00
39042080--39042262
51
3.6
51
70
8
174
28
20
24
25
1.99
39042049--39042429
101
3.8
102
87
1
518
27
20
25
26
1.99
39043240--39043272
11
3.0
11
95
0
57
78
0
21
0
0.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39043238--39043270
16
2.0
17
94
5
59
78
0
21
0
0.75
39043964--39044016
3
17.3
3
96
3
97
33
0
0
66
0.92
39045832--39046764
44
21.4
44
72
8
529
29
24
16
28
1.97
39045903--39046764
89
10.0
82
67
16
300
29
25
16
29
1.97
39045833--39046777
133
7.2
133
89
3
1379
29
24
16
29
1.97
39060452--39060477
5
5.2
5
100
0
52
38
19
19
23
1.93
39060426--39060477
26
2.0
26
81
7
61
34
15
26
23
1.94
39062482--39062529
24
2.0
25
88
8
73
22
2
6
68
1.23
39063366--39063419
18
2.9
17
76
15
54
57
1
1
38
1.20
39063367--39063409
20
2.2
20
83
8
52
62
2
2
32
1.20
39067409--39067467
25
2.4
25
82
5
66
11
18
18
50
1.76
39067405--39067476
30
2.4
30
83
0
90
11
22
18
48
1.79
39074594--39074664
32
2.3
31
82
4
88
52
11
18
18
1.74
39076099--39076146
6
8.0
6
92
0
69
50
22
0
27
1.50
39076099--39076146
18
2.7
18
90
0
78
50
22
0
27
1.50
39077744--39077835
45
2.0
45
100
0
184
41
16
29
13
1.86
39095105--39095225
44
2.8
44
83
5
129
24
28
20
26
1.99
39115268--39115332
34
1.9
34
84
6
87
72
1
1
24
1.02
39115267--39115331
24
2.8
25
78
21
70
72
1
1
24
1.02
39118235--39118290
15
3.7
15
82
0
58
53
5
14
26
1.62
39127440--39127491
24
2.2
25
79
10
63
53
1
5
38
1.36
39127446--39127501
24
2.4
24
84
3
78
51
1
5
41
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39127646--39127690
3
14.3
3
86
9
63
64
4
2
28
1.25
39130254--39130309
27
2.1
27
86
0
76
58
5
0
35
1.21
39141949--39142030
42
2.0
42
92
4
139
23
24
10
41
1.86
39144392--39144437
24
1.9
24
100
0
92
32
13
10
43
1.78
39145810--39146222
207
2.0
207
96
0
763
43
5
18
32
1.73
39147646--39147706
13
4.7
13
77
0
59
34
4
24
36
1.77
39147646--39147709
26
2.5
26
75
10
67
32
4
25
37
1.77
39148215--39148266
27
2.0
26
85
11
70
69
0
3
26
1.06
39148862--39148913
27
2.0
26
85
11
70
69
0
3
26
1.06
39149520--39149627
52
2.1
52
96
0
198
18
14
25
41
1.88
39155234--39155286
19
2.8
20
80
13
58
41
5
20
32
1.76
39156681--39156874
49
3.9
49
73
13
139
23
26
21
29
1.99
39165721--39165753
12
2.8
12
100
0
66
51
9
15
24
1.72
39169216--39169422
70
2.8
73
82
10
244
20
19
28
30
1.97
39175999--39176050
27
1.9
27
96
0
95
13
23
36
26
1.92
39176029--39176331
33
8.8
33
73
17
224
19
20
27
32
1.97
39176093--39176145
27
2.0
27
96
0
97
16
22
30
30
1.96
39176105--39176188
42
2.0
41
86
2
114
16
26
28
28
1.97
39176012--39176254
135
1.8
135
100
0
486
17
21
27
33
1.96
39175999--39176294
135
2.2
134
83
6
434
17
20
29
32
1.96
39181098--39181165
21
3.3
21
67
6
59
45
19
22
13
1.84
39181075--39181223
42
3.6
41
76
8
133
43
17
22
16
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39181077--39181170
40
2.3
42
85
3
129
43
20
22
13
1.87
39181077--39181193
40
2.8
40
81
10
128
44
19
21
14
1.86
39187113--39187158
4
11.5
4
100
0
92
50
23
0
26
1.50
39188232--39188431
75
2.8
70
81
9
258
22
19
28
29
1.98
39188316--39188512
102
1.9
103
88
1
297
22
20
26
30
1.98
39195614--39195876
76
3.5
76
91
0
402
21
18
26
33
1.96
39195661--39195874
33
5.5
42
71
20
176
21
18
27
33
1.96
39195778--39195979
102
2.0
103
87
4
293
20
19
27
32
1.97
39198018--39198048
16
1.9
16
93
0
53
6
22
22
48
1.73
39199053--39199314
133
2.0
128
93
5
445
42
8
19
29
1.80
39199318--39199368
13
3.9
13
77
10
59
37
0
1
60
1.08
39199567--39199618
26
2.0
27
85
11
72
63
3
32
0
1.12
39205432--39206128
44
15.9
43
69
12
271
30
20
21
26
1.98
39205751--39206157
85
4.8
85
71
11
276
29
21
20
27
1.98
39205660--39206122
129
3.6
129
91
0
730
30
21
21
26
1.99
39207587--39207640
25
2.1
27
86
6
76
27
3
7
61
1.40
39213044--39213084
21
2.1
19
86
9
55
31
2
2
63
1.20
39224192--39224243
19
2.7
19
82
11
54
42
28
17
11
1.84
39225363--39225557
3
64.7
3
70
10
112
31
6
4
58
1.41
39229325--39229359
2
17.5
2
100
0
70
51
0
48
0
1.00
39242256--39242695
219
2.0
220
99
0
873
44
10
11
33
1.76
39242976--39243011
18
1.9
19
88
5
56
61
5
0
33
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39244077--39244145
31
2.2
31
84
0
93
39
11
14
34
1.82
39255956--39256040
42
2.0
42
81
4
100
16
22
18
42
1.89
39255956--39256040
21
4.0
21
81
0
89
16
22
18
42
1.89
39256790--39256817
2
14.0
2
100
0
56
50
0
0
50
1.00
39259025--39259059
17
1.9
18
88
11
54
65
8
0
25
1.21
39262791--39262825
16
2.2
16
90
5
54
74
8
0
17
1.06
39263732--39263757
12
2.2
12
100
0
52
30
0
0
69
0.89
39268309--39268339
2
15.5
2
93
0
53
0
48
0
51
1.00
39268810--39268845
3
12.0
3
93
0
63
30
33
2
33
1.72
39271743--39271775
14
2.4
14
100
0
66
51
27
0
21
1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210