genome.fa.s3.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  118  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39559917--39559952	6	6.0	6	90	0	54	63	2	30	2	1.22
39570177--39570201	13	1.9	13	100	0	50	52	0	24	24	1.48
39570273--39570348	40	1.9	40	88	0	116	23	34	14	27	1.94
39570324--39570425	40	2.5	40	81	9	118	15	34	20	29	1.94
39570332--39570425	20	4.7	20	70	15	61	14	34	21	29	1.93
39584411--39584484	36	2.1	36	97	0	139	21	22	13	41	1.88
39585349--39585408	30	2.0	30	86	0	84	48	11	6	33	1.66
39590091--39590115	2	12.5	2	100	0	50	48	0	0	52	1.00
39590671--39591349	75	9.2	75	98	1	1256	44	2	14	38	1.59
39593229--39593279	16	3.2	16	86	2	68	29	11	5	52	1.61
39596379--39596425	16	2.9	17	75	12	53	46	17	6	29	1.72
39596378--39596432	16	3.4	16	71	16	51	43	20	7	29	1.78
39603127--39603164	4	9.5	4	100	0	76	26	0	23	50	1.50
39612207--39612235	2	14.5	2	100	0	58	48	0	51	0	1.00
39614033--39614065	9	3.8	9	88	4	50	90	0	9	0	0.44
39620290--39620314	13	1.9	13	100	0	50	24	8	20	48	1.76
39626580--39626617	20	1.9	20	88	0	58	26	21	18	34	1.96
39626610--39626673	20	3.2	20	71	10	58	26	21	20	31	1.98
39630487--39630535	22	2.3	22	79	13	57	73	4	14	8	1.21
39630491--39630534	21	2.1	21	83	8	54	72	4	13	9	1.24
39635679--39635735	30	1.9	30	85	0	78	33	40	15	10	1.82
39639232--39639516	126	2.3	126	89	1	437	28	20	17	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39639576--39639605	7	4.3	7	100	0	60	46	40	0	13	1.43
39639541--39639971	95	4.5	95	87	5	543	38	18	2	40	1.63
39639541--39639969	189	2.2	193	85	6	577	37	18	2	41	1.63
39649149--39649188	13	3.0	13	85	7	53	75	7	2	15	1.14
39649154--39649191	14	2.8	13	88	7	58	78	7	0	13	0.94
39657094--39657206	50	2.2	50	85	1	154	38	6	30	25	1.80
39668473--39668517	19	2.2	21	88	7	67	8	26	13	51	1.70
39669061--39669108	24	1.9	26	87	8	73	52	12	10	25	1.71
39669831--39669871	21	2.0	20	90	4	64	65	0	4	29	1.13
39669945--39669979	11	3.2	11	95	0	61	54	0	14	31	1.40
39669945--39669985	11	3.8	11	93	3	57	58	0	12	29	1.34
39669963--39670014	27	1.9	28	92	7	90	65	0	3	30	1.10
39672192--39672232	19	2.1	20	86	13	59	41	0	4	53	1.22
39672297--39672341	21	2.0	24	83	12	60	51	2	4	42	1.34
39674784--39674835	26	2.0	26	92	0	86	42	17	9	30	1.81
39675232--39675402	83	2.0	84	98	1	335	50	9	7	32	1.61
39678079--39678112	16	2.1	17	94	5	61	67	5	0	26	1.13
39678282--39678331	3	16.3	3	87	4	73	64	0	4	32	1.12
39679901--39680010	44	2.5	44	83	2	132	30	20	21	28	1.98
39680335--39680524	45	4.2	45	76	6	206	26	23	20	29	1.99
39680536--39680913	44	8.7	44	81	7	405	26	23	19	29	1.98
39680529--39680908	126	3.0	125	82	5	379	26	23	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39680924--39681320	88	4.5	88	90	0	641	18	23	27	29	1.98
39680987--39681315	44	7.5	44	64	5	162	18	23	29	28	1.97
39682395--39682497	42	2.5	42	75	0	107	23	28	13	34	1.93
39687065--39687101	17	2.1	17	95	5	65	67	5	0	27	1.12
39687139--39687181	3	14.3	3	85	0	59	60	0	4	34	1.17
39687142--39687186	15	3.0	15	86	0	54	57	2	4	35	1.31
39687208--39687272	3	21.7	3	100	0	130	67	0	32	0	0.91
39691839--39691867	13	2.1	14	93	6	51	0	34	0	65	0.93
39692406--39692819	205	2.0	206	99	0	821	26	11	24	38	1.89
39692946--39693169	27	8.3	27	78	3	200	43	19	15	21	1.87
39692965--39693169	81	2.5	80	86	2	275	43	20	15	20	1.87
39693527--39693601	30	2.4	30	79	18	82	16	24	25	34	1.95
39694071--39694111	20	2.0	20	95	0	73	43	17	14	24	1.86
39699378--39699416	20	2.0	20	85	10	53	33	10	30	25	1.89
39701319--39701368	18	2.6	19	81	15	59	4	28	2	66	1.21
39702274--39702449	27	6.5	27	83	3	205	43	15	18	22	1.88
39702274--39702449	81	2.2	81	82	6	248	43	15	18	22	1.88
39702627--39702699	26	2.8	26	85	0	83	13	21	24	39	1.90
39707022--39707071	13	3.8	13	78	0	64	40	24	2	34	1.66
39707022--39707072	26	2.0	26	88	0	75	39	23	3	33	1.73
39707355--39707390	7	5.1	7	100	0	72	58	0	0	41	0.98
39712310--39712498	51	3.7	50	81	3	218	31	26	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39714951--39714988	14	2.7	14	91	0	58	36	13	7	42	1.73
39717386--39717411	12	2.2	12	100	0	52	23	7	7	61	1.49
39719040--39719103	6	10.3	6	90	6	92	85	0	0	14	0.59
39719044--39719113	12	5.5	12	84	8	77	84	0	1	14	0.70
39719040--39719113	38	1.9	38	89	5	114	83	0	1	14	0.71
39719037--39719112	33	2.3	32	88	6	118	84	0	2	13	0.73
39727607--39727675	29	2.4	29	80	4	77	36	24	10	28	1.88
39749909--39750007	50	2.0	50	87	0	144	47	12	13	27	1.78
39777773--39777831	29	2.0	29	96	0	109	8	27	6	57	1.53
39778774--39778799	1	26.0	1	100	0	52	100	0	0	0	0.00
39796708--39796877	39	4.4	39	87	0	250	32	15	34	17	1.91
39796806--39796867	19	3.2	19	69	13	54	33	16	33	16	1.91
39796708--39796848	20	7.2	20	64	10	76	32	15	34	17	1.92
39805922--39805954	17	1.9	17	100	0	66	51	0	12	36	1.39
39808104--39809103	249	4.0	250	84	3	1215	39	13	14	33	1.85
39808104--39809103	499	2.0	501	85	2	1355	39	13	14	33	1.85
39812164--39812334	46	3.8	46	92	1	283	36	9	23	29	1.88
39829241--39829500	132	2.0	132	88	3	389	33	12	10	43	1.78
39834250--39834308	18	3.3	18	72	9	57	25	13	13	47	1.79
39834241--39834335	36	2.6	36	74	0	91	27	21	13	37	1.91
39836818--39836930	44	2.6	42	82	8	118	17	18	19	44	1.87
39836855--39836931	20	3.6	21	78	13	86	16	22	19	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39838949--39838988	19	2.1	19	95	0	71	62	10	7	20	1.50
39842659--39842693	12	3.0	12	87	4	54	31	0	0	68	0.90
39844527--39844668	69	2.1	69	83	2	178	14	31	12	40	1.84
39846718--39846808	26	3.5	26	100	0	182	26	25	26	21	2.00
39852001--39852599	23	27.0	22	76	10	533	26	1	24	47	1.60
39852009--39852578	44	12.8	44	73	15	254	26	1	24	48	1.60
39851999--39852246	68	3.7	68	89	5	362	25	1	25	48	1.59
39852223--39852261	16	2.4	17	86	4	53	20	0	25	53	1.45
39852159--39852445	105	2.8	103	76	13	233	27	1	22	48	1.59
39852179--39852556	205	1.9	198	84	9	514	26	1	24	47	1.61
39852767--39852807	21	2.0	21	85	9	57	2	26	41	29	1.69
39853746--39853771	7	3.7	7	100	0	52	57	15	0	26	1.38
39853941--39853978	20	1.9	20	84	10	51	55	7	2	34	1.43
39862845--39863074	23	10.1	23	72	2	142	46	20	13	20	1.83
39862853--39863047	46	4.2	46	80	2	185	46	20	12	20	1.83
39862857--39863074	46	4.8	46	80	2	172	46	20	13	19	1.83
39862845--39863064	92	2.4	92	78	0	233	46	20	12	20	1.82
39881071--39881204	23	5.8	23	74	3	117	39	19	17	23	1.92
39888667--39888799	28	4.6	28	81	10	160	32	21	23	23	1.98
39888667--39888799	61	2.3	59	84	8	175	32	21	23	23	1.98
39889178--39889413	81	2.9	79	81	9	287	21	14	21	43	1.87
39889192--39889412	27	8.2	26	80	7	246	20	14	20	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39892112--39892345	28	8.4	28	87	5	298	29	22	24	23	1.99
39892112--39892345	84	2.8	83	86	5	330	29	22	24	23	1.99
39892452--39892527	26	2.9	26	80	0	80	32	23	23	19	1.97
39892759--39893144	27	14.4	27	82	4	363	18	16	20	44	1.87
39901004--39901067	25	2.5	26	80	14	80	60	3	1	34	1.22
39906683--39906724	22	2.1	19	86	13	57	52	0	2	45	1.13
39914173--39914213	6	7.2	6	91	2	59	63	0	2	34	1.08
39918207--39918253	21	2.2	21	88	0	67	46	25	14	12	1.80
39924864--39924893	3	10.0	3	92	0	51	3	0	30	66	1.07
39926594--39926682	27	3.3	27	90	0	133	35	10	25	28	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210