Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  183  of  210  ( 25174 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60782539--60782577
17
2.3
17
86
0
51
35
5
2
56
1.35
60787778--60787821
23
1.9
23
100
0
88
34
18
27
20
1.96
60789328--60789402
23
3.3
23
90
0
114
37
1
12
49
1.48
60805764--60805791
2
14.0
2
100
0
56
50
0
0
50
1.00
60807018--60807048
13
2.4
13
94
0
53
25
12
12
48
1.77
60808013--60808054
20
2.2
19
87
8
59
30
0
45
23
1.53
60808036--60808151
54
2.2
52
83
4
142
42
0
32
24
1.61
60807979--60808119
74
1.9
73
84
7
187
42
0
34
22
1.59
60808036--60808172
54
2.6
51
78
12
141
43
0
31
24
1.59
60811189--60811238
25
2.0
26
88
4
75
38
8
16
38
1.78
60820012--60820041
14
2.1
15
93
6
53
20
6
20
53
1.67
60820177--60820244
25
2.7
25
81
0
82
44
1
14
39
1.55
60821841--60821911
27
2.6
29
77
8
85
26
16
26
29
1.97
60827733--60827775
5
8.6
5
89
0
50
48
6
0
44
1.29
60827732--60827780
15
3.3
15
74
2
55
46
6
0
46
1.27
60838960--60838999
19
2.1
19
86
9
55
55
2
0
42
1.13
60841902--60841948
15
3.1
15
76
11
51
38
4
0
57
1.18
60847913--60847951
14
2.7
15
84
8
53
20
10
15
53
1.70
60851243--60851306
13
4.9
13
90
0
92
26
10
23
39
1.88
60851243--60851306
26
2.5
26
94
0
110
26
10
23
39
1.88
60851596--60851854
64
4.0
64
99
0
509
39
15
16
27
1.90
60857145--60857176
6
5.3
6
100
0
64
15
15
18
50
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60858371--60858479
54
2.0
54
100
0
218
47
16
6
29
1.71
60864295--60864345
4
12.8
4
79
8
59
23
5
27
43
1.77
60864297--60864343
12
3.9
12
88
0
76
23
6
27
42
1.78
60865554--60865676
62
2.0
62
100
0
246
15
24
22
37
1.93
60868458--60869058
109
5.5
109
82
1
639
40
11
20
27
1.88
60868566--60868933
34
10.1
36
70
10
135
38
12
21
27
1.89
60868458--60869082
218
2.9
219
82
2
710
40
12
20
27
1.88
60871319--60871413
36
2.5
39
79
5
106
36
13
23
26
1.92
60874602--60874629
11
2.5
11
100
0
56
35
17
17
28
1.93
60879136--60879205
28
2.5
29
90
6
110
42
8
1
47
1.43
60879250--60879356
27
4.0
27
96
0
169
26
28
29
14
1.95
60883032--60883181
38
4.3
32
74
23
92
0
33
0
66
0.97
60883093--60883203
18
6.1
18
73
15
86
0
32
0
65
1.05
60883124--60883203
34
2.8
28
73
24
76
0
32
1
66
1.00
60883082--60883172
38
2.4
38
96
0
164
1
36
0
62
1.02
60883164--60883206
22
1.9
23
85
4
61
0
30
2
67
1.03
60883126--60883207
28
2.7
30
73
19
80
0
32
1
65
1.00
60883334--60883371
12
3.2
12
88
7
51
0
2
7
89
0.57
60883369--60883439
27
2.7
26
91
6
115
46
1
8
43
1.42
60885577--60885604
2
14.0
2
100
0
56
50
0
0
50
1.00
60896593--60896637
22
2.0
22
100
0
90
62
4
8
24
1.43
60896879--60896922
21
2.0
22
83
12
56
43
9
11
36
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60898596--60898730
68
1.9
68
82
7
162
40
3
7
48
1.49
60904598--60904632
17
2.0
18
88
5
54
65
22
0
11
1.24
60908614--60908676
23
2.7
22
79
16
74
17
7
22
52
1.70
60928735--60928770
12
3.0
12
91
0
63
50
13
16
19
1.79
60937837--60937878
18
2.3
18
84
8
50
28
2
2
66
1.16
60938394--60938569
93
1.9
92
85
1
244
37
17
9
35
1.83
60938585--60938657
36
2.1
34
84
5
92
60
0
2
36
1.11
60939082--60939274
86
2.2
88
88
4
295
30
9
21
37
1.86
60939867--60939934
9
7.6
9
80
12
68
29
2
1
66
1.15
60939868--60939982
9
12.4
9
68
14
65
25
3
4
66
1.25
60939868--60939983
19
6.2
19
68
11
53
25
3
4
67
1.25
60939896--60939957
28
2.2
28
82
5
72
24
3
6
66
1.30
60940005--60940197
86
2.2
88
88
4
295
30
9
21
37
1.86
60952077--60952125
25
1.9
26
91
4
82
30
2
16
51
1.56
60958977--60959084
40
2.7
40
87
4
148
34
21
18
25
1.96
60959954--60960029
4
18.2
4
74
15
50
0
22
3
73
0.99
60960041--60960087
19
2.5
19
82
0
58
27
2
2
68
1.13
60970894--60970924
4
8.0
4
92
7
55
48
0
0
51
1.00
60973860--60973920
30
2.1
30
84
3
79
44
3
18
34
1.66
60974419--60974538
49
2.4
49
81
4
143
31
20
24
23
1.98
60979089--60979144
3
18.7
3
96
0
103
32
1
0
66
1.03
60979143--60979168
3
8.7
3
100
0
52
0
0
30
69
0.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60981737--60981782
24
1.9
24
86
0
65
45
17
26
10
1.81
60984385--60984426
14
2.9
14
85
3
57
80
0
19
0
0.70
60984386--60984425
20
2.0
20
95
0
71
82
0
17
0
0.67
60987248--60987272
2
12.5
2
100
0
50
48
0
0
52
1.00
60995444--60995513
36
2.0
36
91
2
115
14
11
31
42
1.81
60995421--60995513
35
2.6
36
84
5
127
13
9
32
44
1.77
60996189--60996242
19
2.8
19
97
0
99
37
9
16
37
1.81
60996202--60996265
19
3.0
22
86
8
80
37
6
17
39
1.75
60996231--60996275
23
2.0
23
86
4
65
33
4
15
46
1.66
60996564--60996609
21
2.2
21
84
7
58
28
8
0
63
1.24
60996774--60996822
23
2.2
21
75
10
53
38
0
4
57
1.18
60996812--60996862
18
2.8
18
75
3
57
33
3
7
54
1.47
60997115--60997146
10
2.8
12
86
13
50
46
0
0
53
1.00
60998999--60999045
19
2.5
20
86
6
71
38
0
2
59
1.09
60998993--60999069
24
3.2
24
67
10
59
35
0
1
63
1.03
60999042--60999083
20
2.2
20
86
4
59
38
0
0
61
0.96
61003137--61003164
3
9.3
3
100
0
56
0
35
0
64
0.94
61007555--61007586
7
4.7
7
96
3
57
53
0
0
46
1.00
61008134--61008196
19
3.3
19
84
6
74
57
1
0
41
1.08
61008139--61008192
28
1.9
28
85
14
76
53
1
0
44
1.11
61008139--61008195
9
6.1
9
76
15
53
56
1
0
42
1.10
61008247--61008291
17
2.6
17
82
6
56
53
0
2
44
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61008584--61008623
21
1.9
21
90
10
64
55
7
12
25
1.63
61009048--61009105
3
19.3
3
100
0
116
0
32
0
67
0.91
61011537--61011677
42
3.1
45
69
19
130
35
25
9
29
1.88
61018233--61018322
26
3.4
26
65
17
67
51
4
14
30
1.62
61018191--61018313
54
2.2
55
94
5
214
49
5
17
26
1.69
61027672--61027714
20
2.2
20
83
4
52
41
11
9
37
1.74
61030535--61030575
3
13.7
3
89
0
64
26
0
4
68
1.10
61035703--61035746
17
2.6
17
96
0
79
40
18
0
40
1.50
61036340--61036396
30
1.9
30
85
0
78
14
31
33
21
1.92
61041928--61042193
135
2.0
135
90
0
424
34
13
26
25
1.93
61042213--61042324
18
6.4
18
84
7
133
60
1
35
1
1.17
61042213--61042302
3
30.0
3
93
0
153
63
0
36
0
0.95
61043843--61043880
19
2.0
19
100
0
76
36
21
15
26
1.93
61045119--61045171
9
5.6
10
82
6
58
26
0
1
71
0.96
61045125--61045171
19
2.5
20
82
10
62
25
0
2
72
0.96
61045777--61045828
24
2.2
24
89
0
77
34
3
7
53
1.48
61051374--61051422
26
2.0
24
92
8
80
30
0
8
61
1.25
61061931--61061985
25
2.2
25
80
0
65
21
32
14
30
1.93
61061939--61061998
25
2.4
25
81
8
61
21
30
15
33
1.94
61067942--61068003
25
2.7
22
80
11
70
30
19
29
20
1.97
61096076--61096168
25
3.8
23
69
18
64
33
22
24
19
1.97
61104472--61104518
19
2.4
19
85
7
58
14
23
17
44
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61104999--61105040
23
1.9
21
85
9
57
33
0
30
35
1.58
61105340--61105406
30
2.2
30
91
0
107
25
26
31
16
1.96
61110068--61110229
51
3.2
51
94
0
288
32
14
22
30
1.94
61113733--61113824
44
2.1
43
92
6
150
31
19
22
26
1.98
61117123--61117171
25
2.0
25
84
15
66
46
0
0
53
1.00
61117127--61117181
25
2.2
26
81
15
62
43
1
1
52
1.22
61117256--61117289
16
2.1
16
88
0
50
58
0
2
38
1.13
61117557--61117615
29
2.0
30
83
3
75
32
5
13
49
1.64
61117567--61117630
30
2.1
31
83
11
80
32
9
9
48
1.67
61117302--61118299
498
2.0
499
99
0
1989
41
7
9
41
1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210