Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  14  of  210  ( 25174 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4846720--4846746
14
1.9
14
100
0
54
59
0
0
40
0.98
4852701--4852742
11
3.5
12
84
15
52
40
0
0
59
0.97
4859823--4859872
21
2.4
22
76
10
59
12
28
0
60
1.32
4867842--4867907
33
2.0
33
100
0
132
48
15
6
30
1.69
4875337--4875384
19
2.5
19
86
10
62
60
6
4
29
1.40
4875489--4875546
21
2.8
20
82
7
62
56
3
1
37
1.26
4875530--4875583
19
2.9
18
76
15
56
62
1
3
31
1.23
4875530--4875584
9
5.9
9
75
8
56
63
1
3
30
1.22
4875453--4875595
10
14.2
10
66
17
55
60
3
2
33
1.28
4875920--4875977
9
6.4
9
78
6
64
41
0
0
58
0.98
4875926--4875978
19
2.8
19
86
8
65
39
0
0
60
0.97
4875917--4875975
26
2.3
26
82
5
75
42
0
0
57
0.98
4877848--4877889
20
2.0
21
86
13
61
83
2
4
9
0.88
4892521--4892555
16
2.2
16
89
0
52
14
2
14
68
1.32
4892708--4892792
25
3.2
25
64
15
62
34
22
9
34
1.86
4892708--4892815
55
2.0
55
96
0
198
32
25
8
33
1.86
4895383--4895413
2
15.5
2
93
0
53
51
3
0
45
1.17
4899800--4899859
31
1.9
31
86
0
84
35
10
10
45
1.71
4906120--4906157
19
2.0
19
100
0
76
42
26
5
26
1.76
4907104--4907146
19
2.3
19
87
0
68
44
11
0
44
1.40
4914153--4914211
31
2.0
30
83
6
75
33
5
3
57
1.37
4927316--4927354
2
19.5
2
100
0
78
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4927793--4927847
24
2.3
25
81
6
69
36
0
3
60
1.15
4936059--4936083
6
4.2
6
100
0
50
16
0
0
84
0.63
4937220--4937282
31
2.0
31
93
0
108
38
3
0
58
1.14
4937228--4937292
31
2.1
31
88
0
94
38
3
1
56
1.24
4941107--4941142
14
2.5
14
95
4
63
5
5
8
80
1.01
4941102--4941143
15
2.7
15
88
3
66
7
4
7
80
1.00
4951314--4951360
22
2.1
23
92
4
78
40
0
2
57
1.11
4951463--4951499
15
2.4
16
90
4
58
64
0
0
35
0.94
4954202--4954249
5
9.4
5
80
13
53
41
14
22
20
1.89
4957759--4957801
20
2.2
20
95
0
77
65
0
0
34
0.93
4958898--4958946
23
2.2
22
83
16
66
22
6
30
40
1.78
4959062--4959092
16
1.9
16
93
0
53
41
0
9
48
1.36
4962021--4962311
145
2.0
146
99
0
575
37
9
6
46
1.62
4964981--4965025
22
2.0
22
95
0
81
24
13
6
55
1.62
4967781--4967921
25
5.6
25
65
13
76
34
21
24
19
1.97
4967851--4967921
26
2.8
26
76
2
72
36
21
23
18
1.95
4975984--4976080
35
2.8
35
88
0
158
25
13
17
43
1.86
4984543--4984569
2
13.5
2
100
0
54
0
48
0
51
1.00
5008787--5008811
10
2.5
10
100
0
50
60
0
20
20
1.37
5008806--5008835
4
7.5
4
100
0
60
50
0
26
23
1.50
5009918--5009998
41
1.9
43
90
5
130
64
0
1
34
1.02
5010368--5010434
20
3.2
20
74
12
71
43
1
1
53
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5011441--5011478
17
2.2
18
86
9
53
42
0
0
57
0.98
5011436--5011478
17
2.5
17
82
10
52
41
0
0
58
0.98
5018069--5018125
3
19.3
3
96
3
107
64
0
0
35
0.93
5022095--5022169
31
2.4
31
86
6
98
18
13
10
57
1.64
5033284--5033317
14
2.3
15
90
5
52
5
14
2
76
1.09
5033440--5033476
7
5.3
7
100
0
74
72
0
0
27
0.84
5039840--5039866
2
13.5
2
100
0
54
48
0
0
51
1.00
5049925--5049949
2
12.5
2
100
0
50
52
0
0
48
1.00
5057810--5057860
17
2.8
18
80
14
52
52
1
3
41
1.31
5064020--5064116
46
2.1
46
92
0
158
53
2
13
30
1.51
5066054--5066326
135
2.0
135
97
0
521
21
9
24
45
1.81
5066097--5066370
134
2.0
135
79
6
288
21
14
21
42
1.88
5066096--5066371
135
2.0
135
80
5
299
21
14
21
42
1.88
5066660--5066726
3
22.3
3
96
0
125
32
1
0
65
1.02
5070834--5070893
6
10.7
6
80
8
56
70
8
5
16
1.31
5070856--5070926
21
3.3
21
76
13
74
73
5
8
12
1.24
5073151--5073908
46
17.7
43
68
14
241
30
19
21
29
1.97
5073243--5073827
170
3.5
170
88
2
804
30
18
21
29
1.97
5076110--5076143
3
11.3
3
93
0
59
32
2
0
64
1.08
5081357--5081412
16
3.5
16
69
9
51
55
32
3
8
1.48
5086925--5087012
44
2.0
45
90
2
142
35
18
25
21
1.95
5088824--5088868
20
2.1
22
84
12
58
13
11
8
66
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5095345--5095468
34
3.6
34
87
5
178
37
17
25
20
1.94
5095757--5095794
14
2.8
13
92
7
67
36
10
5
47
1.61
5100375--5100409
15
2.3
15
90
9
54
77
8
0
14
0.99
5100374--5100411
8
4.9
8
84
15
53
76
7
0
15
1.01
5100414--5100481
29
2.3
29
87
5
93
27
23
8
39
1.84
5100737--5100780
10
4.5
10
77
5
54
65
0
34
0
0.93
5100744--5100774
16
2.0
15
93
6
53
64
0
35
0
0.94
5100850--5100891
12
3.8
12
84
9
54
54
0
45
0
0.99
5101162--5101217
15
3.7
15
85
7
69
83
0
16
0
0.64
5101165--5101222
16
3.4
17
81
18
75
81
0
18
0
0.70
5101173--5101217
8
5.5
8
85
15
65
84
0
15
0
0.62
5101414--5101644
113
2.0
114
95
1
419
35
14
16
33
1.89
5101835--5102008
18
9.8
18
78
10
189
31
14
10
43
1.81
5101835--5102077
17
13.8
17
73
13
154
30
13
10
44
1.78
5101827--5102008
35
5.1
36
78
6
194
31
14
10
43
1.79
5102281--5102311
14
2.2
14
100
0
62
45
0
6
48
1.28
5105538--5105589
15
3.5
15
73
19
54
25
19
7
48
1.75
5105550--5105593
4
11.5
4
80
9
56
25
20
4
50
1.67
5105530--5105593
30
2.1
30
97
0
119
25
20
7
46
1.77
5105530--5105587
11
5.5
11
71
24
54
25
20
8
44
1.80
5109375--5109410
13
2.7
13
91
4
54
16
19
5
58
1.58
5113054--5113091
17
2.3
17
86
4
51
84
5
10
0
0.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5113931--5114057
64
2.0
64
89
3
193
26
15
22
35
1.94
5114154--5114656
75
6.6
79
82
7
621
27
14
20
37
1.92
5114838--5114879
15
2.9
14
86
13
50
78
7
2
11
1.04
5114879--5114958
29
2.8
29
83
9
110
31
21
5
42
1.74
5115435--5115485
20
2.5
20
81
6
59
74
9
13
1
1.15
5115618--5115712
1
95.0
1
72
0
64
85
0
10
4
0.73
5115618--5115710
16
5.9
16
78
13
86
84
0
10
4
0.74
5116073--5116114
21
2.0
20
90
4
66
35
14
9
40
1.78
5116073--5116114
20
2.1
19
86
8
57
35
14
9
40
1.78
5116220--5116348
18
7.3
18
74
10
113
31
13
10
44
1.78
5116269--5116418
17
8.5
17
69
14
90
30
13
11
45
1.78
5117688--5117757
3
23.7
3
75
13
56
27
4
2
65
1.25
5120429--5120531
38
2.6
39
83
4
127
41
10
10
36
1.75
5120473--5120532
18
3.0
20
77
22
72
33
10
11
45
1.74
5120491--5120537
17
2.6
19
87
12
73
38
8
10
42
1.70
5120401--5120532
38
3.5
38
78
8
121
40
10
9
38
1.73
5120857--5120891
14
2.6
14
91
8
56
74
2
0
22
0.95
5121028--5121065
7
5.6
7
87
3
51
0
10
0
89
0.49
5121346--5121431
7
11.9
7
78
15
59
0
24
0
75
0.80
5121346--5121428
3
22.5
4
71
26
51
0
24
0
75
0.80
5121352--5121410
13
4.8
13
78
13
54
0
22
0
77
0.76
5121346--5121431
38
2.2
37
90
10
129
0
24
0
75
0.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5121379--5121432
10
5.6
10
77
16
60
0
25
0
74
0.83
5121629--5121681
20
2.7
20
96
0
97
5
11
56
26
1.56
5121948--5122045
30
3.3
29
73
11
81
39
5
21
33
1.75
5125836--5126319
89
5.4
89
87
0
680
28
23
22
25
1.99
5125836--5126319
178
2.7
178
92
0
788
28
23
22
25
1.99
5126619--5126662
21
2.1
21
86
0
61
38
6
34
20
1.79
5126547--5127240
349
2.0
349
95
0
1262
32
16
22
28
1.96
5127169--5127374
44
4.5
45
76
7
166
33
17
21
27
1.96
5127206--5127374
44
3.8
44
81
3
178
32
18
21
27
1.97
5128808--5129017
104
2.0
105
99
0
413
32
10
3
53
1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210