genome.fa.s3.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  132  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43823301--43823388	46	1.9	46	84	9	117	38	17	21	22	1.93
43823616--43823745	32	4.1	32	85	6	165	38	20	20	20	1.94
43823923--43823965	11	3.7	11	76	11	50	51	27	6	13	1.67
43823913--43823991	24	3.4	24	82	8	101	48	25	7	18	1.75
43824013--43824399	27	14.4	27	81	4	113	23	21	17	37	1.94
43824055--43824421	54	6.8	54	83	5	408	23	20	17	38	1.93
43824055--43824421	81	4.6	81	85	5	426	23	20	17	38	1.93
43824118--43824421	27	11.3	27	85	4	402	22	20	17	38	1.93
43826335--43826854	264	2.0	263	93	0	887	27	23	18	30	1.97
43828017--43828101	44	1.9	44	92	0	143	14	16	18	50	1.78
43828952--43828987	11	3.2	11	88	7	54	0	2	11	86	0.68
43828959--43828988	12	2.5	12	88	0	51	0	0	10	90	0.47
43831686--43831728	22	2.0	22	85	0	59	23	18	16	41	1.89
43832396--43832429	16	2.1	16	94	0	59	14	5	8	70	1.31
43835035--43835060	10	2.6	10	100	0	52	30	0	7	61	1.24
43840002--43840034	4	8.2	4	100	0	66	75	0	0	24	0.80
43840058--43840088	16	1.9	16	100	0	62	12	9	6	70	1.31
43841698--43841731	18	1.9	17	88	5	50	50	0	0	50	1.00
43856936--43856965	10	3.0	10	95	0	51	33	10	0	56	1.32
43856942--43856985	17	2.6	17	78	3	54	36	6	2	54	1.40
43859237--43859591	187	1.9	185	83	5	464	39	8	7	44	1.65
43879426--43879610	36	5.0	37	84	4	221	34	18	15	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43879426--43879623	73	2.7	73	80	3	227	33	18	15	32	1.92
43879553--43879629	39	2.0	39	84	0	100	38	19	10	31	1.85
43881083--43881128	24	1.9	24	95	0	83	13	45	4	36	1.63
43882735--43882774	20	2.0	20	90	0	62	50	12	10	27	1.72
43888242--43888294	23	2.3	23	87	3	72	35	18	24	20	1.95
43891225--43891262	19	2.0	19	100	0	76	10	10	31	47	1.72
43897114--43897500	194	2.0	193	96	0	720	27	8	22	41	1.83
43898307--43898347	21	2.0	21	95	0	73	29	12	9	48	1.72
43898469--43898540	22	3.3	22	90	0	108	27	15	30	26	1.96
43899180--43899268	23	3.9	23	79	1	90	37	20	21	21	1.95
43903143--43903203	30	2.0	30	100	0	122	29	9	9	50	1.67
43911862--43911932	35	2.0	35	94	0	124	28	22	12	36	1.91
43918028--43918067	13	2.9	14	88	3	55	72	7	2	17	1.19
43918712--43918750	14	2.8	13	81	11	51	15	0	2	82	0.79
43924343--43924515	28	6.0	28	68	15	104	57	2	13	26	1.48
43924429--43924499	22	3.2	21	80	9	79	56	2	15	25	1.53
43924428--43924497	5	12.7	6	75	10	53	55	2	17	24	1.55
43924660--43924779	11	10.5	11	68	17	57	58	3	11	26	1.49
43924660--43924721	17	3.7	17	81	8	65	53	1	12	32	1.49
43924705--43924897	60	3.2	60	69	12	160	61	4	9	23	1.46
43924712--43924786	23	3.1	24	75	5	71	65	4	10	20	1.40
43924993--43925052	11	5.3	11	75	15	59	55	1	13	30	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43924993--43925052	23	2.6	23	79	10	68	55	1	13	30	1.48
43927318--43927631	89	3.5	89	84	4	384	61	12	3	22	1.46
43927524--43927596	32	2.2	32	80	7	85	65	13	1	19	1.33
43928196--43928367	58	3.0	56	82	5	211	36	15	15	33	1.89
43958096--43958162	32	2.1	32	86	5	91	29	2	11	55	1.51
43958601--43958654	20	2.7	20	85	5	65	27	5	3	62	1.34
43958606--43958661	20	2.8	21	83	5	62	26	7	3	62	1.38
43958629--43958692	29	2.2	29	86	13	87	26	7	1	64	1.30
43958703--43958751	21	2.3	22	82	10	66	38	2	2	57	1.22
43958698--43958751	10	5.2	11	71	10	51	37	1	1	59	1.19
43958698--43958801	20	5.2	19	74	10	73	34	4	0	59	1.25
43961054--43961089	16	2.2	17	90	5	56	75	11	5	8	1.19
43969570--43969609	18	2.2	19	86	4	55	67	0	2	30	1.04
43975583--43975648	31	2.1	31	97	0	123	33	16	6	43	1.73
43983621--43983660	20	2.0	20	100	0	80	35	20	20	25	1.96
43994044--43994102	29	2.1	29	81	9	68	28	3	3	64	1.26
43998178--43998271	13	7.2	13	70	11	75	55	8	5	30	1.52
43998173--43998271	40	2.5	39	83	4	110	55	8	6	30	1.53
44001118--44001160	18	2.3	18	88	11	61	20	0	27	51	1.48
44003315--44003362	18	2.8	17	73	17	53	35	8	29	27	1.86
44009381--44009588	44	4.7	44	76	9	165	27	26	19	26	1.99
44011027--44011066	17	2.4	17	82	0	53	10	15	0	75	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44014800--44014868	30	2.3	30	85	2	86	27	18	21	31	1.97
44014814--44014875	30	2.1	30	96	0	115	22	20	16	40	1.91
44028011--44028074	32	2.0	32	96	0	119	48	12	15	23	1.79
44028140--44028272	66	2.0	67	97	1	250	53	9	16	21	1.70
44028755--44028936	3	60.0	3	92	2	301	65	0	2	31	1.09
44030408--44030494	44	2.0	44	84	4	113	29	24	16	29	1.96
44030724--44031033	43	7.1	43	64	19	133	27	24	21	27	1.99
44030696--44031090	87	4.6	87	85	2	537	25	24	21	28	1.99
44032699--44032745	17	2.7	17	80	3	58	12	2	14	70	1.26
44032699--44032749	6	8.8	6	82	8	61	11	1	13	72	1.20
44032700--44032743	23	2.0	22	90	4	70	9	2	13	75	1.14
44032700--44032766	29	2.3	29	85	7	91	7	4	10	77	1.10
44035390--44035419	15	2.0	15	93	0	51	36	13	26	23	1.92
44037714--44037752	3	13.0	3	100	0	78	66	0	0	33	0.92
44046361--44046422	21	3.0	22	76	9	67	16	22	17	43	1.87
44046317--44046432	42	2.8	42	83	7	130	17	23	16	43	1.88
44046365--44046432	21	3.2	21	75	8	66	16	20	17	45	1.85
44047153--44047177	13	1.9	13	100	0	50	32	4	24	40	1.73
44048409--44048503	30	3.2	30	86	3	84	32	23	4	40	1.74
44048423--44048539	30	3.9	30	85	2	137	28	23	5	43	1.75
44049082--44049138	13	4.7	12	81	14	64	75	0	24	0	0.80
44049080--44049139	12	4.9	12	77	22	63	75	0	25	0	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44049077--44049139	26	2.5	24	85	15	74	74	0	25	0	0.82
44049908--44049956	17	2.8	17	73	14	55	32	16	10	40	1.82
44050041--44050259	18	12.4	18	76	12	168	29	14	10	44	1.79
44050014--44050259	35	6.9	36	77	6	218	29	14	12	44	1.81
44050007--44050256	53	4.7	53	78	8	217	30	14	12	44	1.81
44060953--44060992	19	2.0	20	90	9	64	82	7	10	0	0.84
44061842--44062581	230	3.2	226	92	4	1188	27	17	21	33	1.96
44061842--44062581	75	9.7	76	94	3	1183	27	17	21	33	1.96
44062893--44062993	30	3.4	28	82	9	85	30	25	4	38	1.77
44062893--44063022	60	2.2	59	80	4	136	29	24	6	40	1.79
44062917--44063023	30	3.6	30	87	1	135	28	22	5	43	1.75
44063565--44063607	12	3.7	11	80	20	52	74	0	25	0	0.82
44063558--44063614	29	2.0	29	85	0	78	73	0	24	1	0.92
44064373--44064421	17	2.8	17	73	14	55	32	16	10	40	1.82
44064471--44064664	52	3.6	54	78	13	163	30	14	12	42	1.82
44064478--44064723	35	6.9	36	75	9	186	29	14	12	43	1.81
44064520--44064723	18	11.6	18	73	12	165	29	14	11	45	1.79
44064471--44064723	53	4.8	53	76	13	209	31	13	11	43	1.81
44064694--44064762	34	2.0	35	86	5	97	37	7	8	46	1.63
44065674--44065806	41	3.2	41	89	2	151	24	16	27	31	1.96
44065713--44065806	41	2.3	41	94	0	161	23	15	28	31	1.96
44068315--44068343	15	1.9	15	100	0	58	51	0	6	41	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44069869--44069894	3	8.7	3	100	0	52	34	30	0	34	1.58
44070531--44070581	23	2.2	23	89	0	75	54	23	5	15	1.63
44071115--44071153	2	19.0	2	89	5	60	51	2	0	46	1.14
44071271--44071507	3	79.0	3	100	0	474	66	0	0	33	0.92
44071692--44071750	18	3.2	18	79	13	75	67	1	1	28	1.10
44072061--44072118	19	2.7	22	84	10	68	36	8	17	37	1.80
44074318--44074359	18	2.3	19	83	8	59	66	7	2	23	1.28
44079068--44079133	26	2.5	26	100	0	132	16	18	12	53	1.73
44081031--44081070	20	2.0	20	100	0	80	30	10	15	45	1.78
44081016--44081080	34	1.9	33	81	9	78	36	9	12	41	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210