genome.fa.s3.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  162  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54434241--54434358	26	4.5	26	82	4	121	35	5	22	35	1.79
54434262--54434332	13	5.5	13	71	6	63	38	2	28	30	1.71
54434326--54434358	13	2.5	13	90	0	57	39	9	18	33	1.82
54434243--54434358	52	2.2	53	80	4	146	36	6	22	35	1.79
54436846--54436897	20	2.6	20	93	0	77	46	25	21	7	1.77
54441278--54441320	23	2.0	21	86	9	59	13	13	13	58	1.64
54441490--54441530	17	2.5	16	84	7	55	36	0	4	58	1.20
54441469--54441543	39	1.9	38	84	10	98	29	0	6	64	1.19
54442116--54442551	218	2.0	218	98	0	845	36	19	13	31	1.90
54442982--54443040	22	2.5	22	84	13	66	66	3	1	28	1.18
54443058--54443098	21	2.0	21	85	0	55	56	4	7	31	1.48
54444074--54444116	21	2.0	21	95	0	77	27	13	25	32	1.94
54448111--54448256	54	2.7	54	87	4	222	32	19	15	32	1.94
54457922--54458157	50	4.7	50	81	1	251	22	28	23	26	1.99
54463459--54463649	50	3.8	50	82	0	202	22	29	20	26	1.99
54469005--54469127	50	2.5	50	76	0	120	20	30	22	26	1.98
54475687--54475802	26	4.5	26	72	6	101	31	14	23	30	1.94
54481223--54481252	11	2.7	11	94	0	51	40	6	23	30	1.80
54482660--54482822	46	3.5	46	81	0	146	34	16	20	28	1.94
54493931--54493969	19	2.1	19	100	0	78	48	20	0	30	1.50
54495642--54495737	50	1.9	50	80	0	111	22	28	21	27	1.99
54499196--54499371	68	2.6	68	82	0	199	35	18	21	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54502447--54502485	18	2.2	18	90	0	60	17	35	35	10	1.84
54507146--54507197	24	2.2	24	92	0	86	50	3	23	23	1.66
54507266--54507333	21	3.2	21	68	15	68	16	25	14	44	1.85
54507269--54507418	42	3.6	42	84	0	174	16	25	16	42	1.87
54508769--54508797	12	2.5	12	94	5	51	31	17	10	41	1.83
54510574--54510768	98	2.0	98	95	0	354	39	25	8	27	1.84
54511087--54511125	13	3.2	12	86	13	53	74	7	2	15	1.15
54511242--54511277	18	2.0	18	94	0	63	69	0	0	30	0.89
54511260--54511292	13	2.6	13	95	4	59	72	0	0	27	0.85
54516919--54516955	19	1.9	19	94	0	65	13	5	13	67	1.39
54518292--54518570	42	6.6	42	77	11	275	23	16	24	35	1.95
54518292--54518613	127	2.5	127	76	12	304	24	16	24	34	1.95
54518292--54518613	85	3.8	85	90	1	477	24	16	24	34	1.95
54528321--54528367	24	2.0	24	83	8	60	23	19	8	48	1.75
54529031--54529068	13	2.8	14	92	4	60	81	18	0	0	0.69
54529031--54529069	14	2.8	14	84	7	53	82	17	0	0	0.68
54529086--54529159	14	5.5	13	77	6	67	83	6	8	1	0.85
54529079--54529151	24	3.0	25	75	15	71	82	5	10	1	0.90
54529095--54529158	10	6.4	10	77	10	60	82	7	7	1	0.89
54529079--54529146	12	5.7	12	78	16	61	82	5	10	1	0.90
54531109--54531893	100	7.8	100	91	0	1219	29	22	25	22	1.99
54531820--54532149	100	3.3	100	84	0	392	27	22	26	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54531116--54532043	50	18.6	50	72	1	622	29	22	25	21	1.99
54536159--54536187	4	7.5	4	92	7	51	0	24	0	75	0.80
54542998--54543051	29	1.9	28	85	14	76	62	5	5	25	1.39
54543953--54544074	61	2.0	61	98	0	235	33	24	5	36	1.79
54544691--54544742	19	2.9	17	75	10	50	38	11	19	30	1.87
54544714--54544758	23	2.0	23	86	4	65	37	6	17	37	1.76
54549727--54549771	23	2.0	23	86	4	65	40	4	15	40	1.67
54549739--54549781	22	1.9	23	85	4	61	37	4	11	46	1.61
54556566--54556723	56	2.8	56	86	0	217	31	8	15	44	1.77
54558237--54558313	9	8.7	9	75	14	63	62	2	0	35	1.09
54562732--54562979	44	5.6	44	75	7	200	27	19	18	33	1.96
54566528--54566588	26	2.3	26	83	5	70	36	22	26	14	1.93
54572206--54572243	20	2.0	20	85	15	53	55	10	2	31	1.48
54576298--54576322	5	5.0	5	100	0	50	80	0	0	20	0.72
54577921--54578066	41	3.6	41	90	0	238	31	30	21	16	1.95
54578247--54578284	18	2.1	18	95	0	67	36	13	15	34	1.87
54578200--54578323	65	1.9	67	83	3	162	37	16	8	37	1.80
54578265--54578409	47	3.0	46	80	4	173	37	15	7	38	1.76
54578265--54578414	49	3.1	48	80	5	187	38	15	7	39	1.75
54578171--54578387	114	1.9	112	94	1	380	37	16	8	38	1.78
54583734--54583787	18	3.1	17	78	19	58	57	5	0	37	1.22
54583764--54583802	16	2.4	17	91	4	62	71	2	0	25	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54584097--54584137	17	2.4	19	76	23	54	36	0	0	63	0.95
54585000--54585025	13	2.0	13	100	0	52	61	7	7	23	1.49
54585432--54585549	49	2.4	47	77	5	128	52	5	6	35	1.50
54585430--54585594	24	7.0	23	69	13	77	50	4	7	36	1.53
54587241--54587564	173	1.9	173	81	5	395	27	21	21	29	1.99
54587228--54587757	44	12.2	44	70	9	253	26	23	20	30	1.98
54587745--54589285	129	12.0	129	92	0	2516	25	24	19	31	1.98
54587745--54589285	257	6.0	257	93	0	2578	25	24	19	31	1.98
54591500--54591533	6	5.7	6	89	0	50	14	5	11	67	1.39
54596027--54596144	49	2.4	47	77	5	128	52	5	6	35	1.50
54596025--54596189	24	7.0	23	69	13	77	50	4	7	36	1.53
54597768--54597804	16	2.3	16	95	0	65	40	5	32	21	1.76
54599304--54599357	3	18.0	3	100	0	108	66	0	0	33	0.92
54599934--54599984	22	2.3	22	93	0	84	7	41	37	13	1.74
54600783--54601536	90	8.4	90	93	0	1213	30	22	16	30	1.96
54600783--54601536	45	16.8	45	86	0	1004	30	22	16	30	1.96
54605664--54605690	14	1.9	14	100	0	54	48	14	7	29	1.71
54609114--54609321	37	5.4	37	67	15	118	51	4	0	42	1.29
54609097--54609433	119	2.9	119	96	2	619	52	4	0	41	1.28
54609310--54609382	10	7.9	10	66	17	50	56	1	0	42	1.08
54609604--54609631	9	3.1	9	100	0	56	42	14	10	32	1.80
54610831--54610934	49	2.1	49	94	0	181	50	10	7	31	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54613023--54613053	16	1.9	16	100	0	62	70	0	0	29	0.87
54614580--54614734	78	2.0	78	83	0	193	29	16	21	32	1.95
54626309--54627283	132	7.4	133	87	3	1167	28	24	19	28	1.98
54626557--54626769	44	4.8	44	70	6	162	29	23	17	28	1.97
54626601--54626913	44	7.1	44	64	16	128	29	23	19	27	1.98
54629457--54629509	17	3.1	17	75	20	56	1	7	9	81	0.96
54629465--54629524	24	2.5	24	78	7	59	5	6	6	81	0.98
54629500--54629582	26	3.2	27	79	5	82	10	3	10	74	1.18
54637918--54637948	12	2.6	12	94	0	53	25	29	38	6	1.81
54652732--54652826	25	3.8	25	69	15	70	29	23	21	26	1.99
54660911--54661002	48	1.9	48	84	0	121	20	18	23	36	1.94
54687853--54688069	30	7.2	30	72	10	140	38	13	23	23	1.91
54687853--54688008	60	2.6	60	82	2	170	38	13	23	24	1.91
54687853--54688155	90	3.4	90	83	5	339	38	14	24	23	1.91
54687902--54688098	60	3.3	59	83	2	223	40	13	23	23	1.89
54687989--54688128	30	4.7	30	75	10	142	41	13	23	21	1.89
54687927--54688171	30	8.2	30	71	7	122	38	14	23	23	1.91
54698046--54698079	18	1.9	17	88	5	50	20	0	8	70	1.13
54703695--54703890	50	3.9	50	85	2	259	26	21	29	22	1.99
54706073--54706208	23	6.0	23	79	5	123	19	17	17	45	1.86
54706023--54706212	68	2.8	69	79	2	197	18	16	18	45	1.85
54706028--54706208	91	2.0	91	81	4	213	18	16	19	45	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54714221--54714317	35	2.8	35	93	0	167	13	17	29	39	1.88
54719233--54719266	14	2.6	13	90	9	52	29	0	2	67	1.05
54721872--54721928	10	5.6	10	78	17	55	31	1	5	61	1.28
54729390--54729457	29	2.5	26	75	15	73	41	1	1	55	1.18
54729400--54729461	17	4.0	17	68	21	55	43	1	1	53	1.20
54729473--54729720	129	1.9	129	100	0	496	37	10	8	43	1.70
54730277--54730332	25	2.2	24	79	17	69	33	1	1	62	1.16
54733389--54733596	107	1.9	107	98	0	398	49	12	11	26	1.74
54734308--54734541	40	5.8	40	76	2	200	23	31	14	31	1.94
54734306--54734534	80	2.9	80	78	1	235	23	31	13	31	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210