genome.fa.s3.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  114  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38386571--38386626	28	2.0	28	82	6	69	30	25	0	44	1.54
38398429--38398922	249	2.0	248	93	2	841	38	19	13	28	1.90
38410169--38410312	70	2.1	70	97	0	270	37	11	11	39	1.78
38413926--38413970	18	2.5	18	82	7	56	37	4	17	40	1.70
38417297--38417398	48	2.1	48	88	0	150	22	18	33	25	1.97
38425098--38425154	16	3.6	16	85	0	78	40	7	21	31	1.80
38425320--38425462	58	2.5	57	87	5	189	50	3	0	45	1.23
38425331--38425462	57	2.3	58	88	4	185	50	3	0	45	1.19
38438769--38438972	43	4.7	43	88	7	299	20	20	25	33	1.96
38440834--38440864	2	15.5	2	93	0	53	48	0	3	48	1.17
38441767--38441802	17	2.1	18	89	5	56	66	13	2	16	1.36
38452924--38452978	25	2.2	25	83	0	65	29	18	23	29	1.98
38452971--38453036	24	2.8	24	81	4	71	40	21	22	15	1.90
38452995--38453099	25	4.2	25	80	1	95	38	19	24	18	1.93
38455297--38455365	22	3.3	22	74	8	56	52	4	4	39	1.41
38460808--38460877	22	3.3	22	74	6	56	52	4	4	38	1.41
38465194--38465234	21	2.0	21	85	0	55	14	21	19	43	1.87
38467237--38467346	54	2.0	54	89	3	168	28	1	44	25	1.64
38470582--38470624	23	1.9	22	86	13	61	37	11	0	51	1.39
38474637--38474832	43	4.6	43	86	5	256	32	29	16	21	1.95
38474635--38474832	85	2.3	85	84	2	281	33	28	16	21	1.95
38479965--38480137	82	2.1	82	84	4	233	44	24	4	26	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38480206--38480239	15	2.4	14	90	5	50	35	29	0	35	1.58
38480432--38480646	41	5.3	40	83	6	261	28	23	22	25	1.99
38480432--38480646	82	2.6	82	88	2	299	28	23	22	25	1.99
38484081--38484177	48	2.0	48	100	0	194	28	30	19	20	1.97
38485248--38485287	5	8.0	5	94	0	62	35	0	0	65	0.93
38485249--38485287	20	2.0	20	94	0	69	33	0	0	66	0.92
38492590--38492665	29	2.6	29	100	0	152	23	11	13	51	1.74
38492657--38493481	412	2.0	413	99	0	1643	28	14	10	47	1.77
38502689--38502735	11	4.2	11	76	15	51	65	21	2	10	1.33
38503077--38503119	22	1.9	23	85	4	61	53	2	6	37	1.41
38503143--38503188	19	2.3	20	78	10	51	56	0	6	36	1.25
38504676--38505514	217	3.8	217	88	3	1110	28	20	17	33	1.96
38505208--38505325	44	2.7	44	89	0	173	27	22	21	29	1.99
38505110--38505574	233	2.0	233	90	0	723	27	20	17	33	1.96
38505442--38505558	44	2.7	44	80	0	126	25	20	22	31	1.98
38505785--38506023	120	2.0	120	92	0	397	26	20	19	33	1.97
38507299--38507339	7	5.7	7	88	11	57	12	14	0	73	1.11
38507308--38507334	13	2.1	13	100	0	54	14	14	0	70	1.17
38508201--38508281	12	6.2	14	87	11	52	14	2	12	70	1.27
38508220--38508322	6	16.7	6	84	9	118	15	2	12	68	1.31
38512831--38512873	22	1.9	23	85	4	61	53	2	6	37	1.41
38512897--38512942	19	2.3	20	78	10	51	56	0	6	36	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38516914--38516972	28	2.1	28	100	0	118	40	3	20	35	1.69
38526142--38526174	16	2.1	16	100	0	66	30	6	24	39	1.79
38526145--38526180	16	2.2	16	90	0	54	38	5	25	30	1.78
38526995--38527135	60	2.3	60	78	7	144	26	19	12	41	1.88
38531125--38531221	28	3.2	28	68	16	77	34	14	3	48	1.59
38531125--38531248	62	2.0	62	95	0	221	32	15	4	48	1.63
38531137--38531238	29	3.4	29	68	16	82	31	15	3	49	1.63
38533515--38533565	22	2.3	22	100	0	102	27	33	0	39	1.57
38533537--38533649	51	2.2	51	96	0	208	28	30	0	41	1.56
38533664--38533715	10	5.1	10	81	4	59	28	0	0	71	0.87
38533651--38533715	31	2.1	31	97	0	121	32	0	0	67	0.91
38534481--38534505	7	3.6	7	100	0	50	28	0	12	60	1.32
38535159--38535193	18	1.9	18	88	0	52	25	34	8	31	1.86
38535597--38535665	25	2.7	25	86	2	102	46	2	11	39	1.55
38539827--38539892	29	2.3	29	81	0	78	40	19	16	22	1.91
38542120--38542184	22	2.9	22	78	14	71	46	4	0	49	1.22
38542158--38542191	12	2.8	13	86	13	54	50	0	0	50	1.00
38547301--38547484	25	7.4	25	70	18	107	38	20	23	17	1.93
38547353--38547434	26	3.2	26	68	25	84	40	21	21	15	1.91
38547351--38547458	50	2.2	50	98	0	189	42	20	22	14	1.88
38547379--38547459	24	3.3	23	69	24	67	43	19	22	14	1.88
38550684--38550725	21	2.0	21	85	0	57	40	21	2	35	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38559964--38560015	18	2.8	18	82	5	50	42	17	19	21	1.89
38560322--38560380	9	6.6	8	88	11	64	25	10	23	40	1.86
38560314--38560380	18	3.7	18	88	4	91	25	8	23	41	1.83
38560322--38560380	27	2.2	27	93	0	100	25	10	23	40	1.86
38562929--38562982	25	2.2	25	83	6	65	18	24	14	42	1.88
38562947--38563016	25	2.8	25	76	4	70	18	24	17	40	1.91
38563025--38563081	25	2.3	25	78	0	69	21	28	21	29	1.98
38565329--38565467	71	2.0	71	92	0	233	35	19	19	25	1.95
38565399--38566150	94	8.0	94	83	2	868	31	19	20	28	1.97
38565461--38565692	50	4.9	48	71	17	173	30	20	21	27	1.98
38567832--38567862	7	4.6	7	96	4	55	29	0	0	70	0.87
38567832--38567871	14	3.1	13	86	10	55	30	0	2	67	1.04
38567968--38568033	5	14.6	5	87	9	74	19	1	0	78	0.82
38567968--38568029	28	2.3	27	86	10	83	19	1	0	79	0.82
38567969--38568034	8	7.5	8	85	14	62	21	1	0	77	0.85
38572165--38572211	24	2.0	24	86	0	67	36	14	27	21	1.93
38572257--38572329	26	2.9	25	80	11	78	41	19	23	16	1.90
38579184--38579248	27	2.4	28	94	2	114	41	10	0	47	1.38
38579310--38579388	27	2.9	27	94	0	140	31	22	31	13	1.93
38579815--38579887	18	3.9	19	80	5	87	38	12	0	49	1.41
38579815--38579891	37	2.1	37	97	0	145	38	11	0	49	1.39
38580089--38580127	19	2.1	19	85	9	53	5	2	12	79	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38580120--38580183	28	2.4	28	94	5	114	48	0	10	40	1.38
38580993--38581030	2	19.0	2	100	0	76	50	0	0	50	1.00
38595525--38595580	13	4.5	13	71	8	53	55	3	0	41	1.17
38595522--38595596	37	2.0	37	100	0	150	54	2	0	42	1.14
38598578--38598650	3	24.3	3	72	5	58	60	4	6	28	1.41
38600546--38600573	13	2.2	13	100	0	56	42	0	28	28	1.56
38600837--38600872	14	2.6	14	90	0	54	13	5	36	44	1.68
38600878--38600936	27	2.1	27	81	9	66	16	1	30	50	1.55
38632640--38632687	23	2.1	23	100	0	96	12	16	29	41	1.85
38632910--38632952	21	2.1	20	86	4	59	13	11	23	51	1.74
38634444--38634538	48	1.9	47	81	8	109	51	3	4	41	1.37
38635286--38635925	320	2.0	320	100	0	1280	29	20	13	36	1.91
38640653--38640711	25	2.5	24	76	17	68	69	8	1	20	1.23
38643641--38643687	23	2.0	23	91	0	76	34	23	2	40	1.67
38652693--38652756	24	2.7	24	87	0	83	35	4	10	48	1.59
38655147--38655218	16	4.5	16	77	6	83	38	5	25	30	1.78
38655200--38655297	49	2.0	50	88	6	146	33	4	26	35	1.76
38662667--38662697	9	3.4	9	90	0	53	25	12	22	38	1.90
38669352--38669381	14	2.2	13	94	5	51	56	6	13	23	1.60
38687092--38687120	13	2.2	13	100	0	58	48	20	10	20	1.79
38692117--38692448	23	14.4	23	86	2	470	27	9	20	43	1.82
38692450--38692638	25	7.7	25	76	11	194	42	13	0	43	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38692475--38692713	96	2.5	96	92	2	392	43	13	0	41	1.49
38692651--38692712	25	2.5	25	78	0	70	45	12	1	40	1.52
38692596--38692927	137	2.4	140	88	7	464	46	15	0	37	1.50
38692596--38692927	71	4.7	71	86	7	466	46	15	0	37	1.50
38692733--38692846	25	4.7	26	70	19	102	45	14	0	40	1.44
38693346--38693385	18	2.2	18	95	0	71	42	5	30	22	1.75
38694037--38694103	7	9.6	7	98	0	125	59	13	0	26	1.34
38695169--38695291	51	2.4	51	87	2	176	42	1	26	30	1.65
38695267--38695311	22	2.0	22	91	0	72	44	0	35	20	1.51
38695272--38695316	11	4.0	11	85	2	63	46	0	35	17	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210