genome.fa.s3.2.7.7.80.10.50.1000.182.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  182  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60460915--60460958	22	2.0	23	95	4	81	45	0	31	22	1.53
60462965--60463001	14	2.6	15	87	12	60	43	5	10	40	1.63
60470373--60470431	29	2.0	29	96	0	109	28	13	20	37	1.91
60474636--60474670	18	2.0	17	88	5	52	45	0	0	54	0.99
60474632--60474681	15	3.2	16	79	17	52	52	0	0	48	1.00
60474827--60474923	45	2.2	45	85	5	126	34	28	5	31	1.79
60474903--60474951	16	3.1	16	96	0	89	22	34	6	36	1.79
60475351--60475402	24	2.2	23	86	6	77	34	11	1	51	1.49
60475456--60475487	11	2.8	12	90	9	50	25	6	0	68	1.12
60475555--60475598	3	14.3	3	85	4	61	29	2	0	68	1.02
60481449--60481491	12	3.6	12	74	0	50	27	20	30	20	1.98
60481450--60481503	24	2.2	24	96	0	99	25	24	33	16	1.96
60489328--60489777	44	9.9	44	72	6	274	34	16	18	30	1.93
60489598--60489696	51	1.9	51	83	0	126	37	16	16	30	1.90
60489511--60489782	139	2.0	139	85	4	370	33	18	19	29	1.95
60490267--60490306	21	1.9	21	84	0	53	60	12	22	5	1.52
60493334--60493369	19	1.9	19	88	5	56	52	16	0	30	1.44
60495092--60495133	20	2.2	19	83	8	50	30	11	0	57	1.35
60499533--60499645	45	2.5	45	84	2	147	18	19	23	38	1.93
60501952--60502002	21	2.4	23	75	18	56	49	5	0	45	1.26
60509536--60509633	25	4.0	25	73	5	76	21	22	21	34	1.97
60522867--60522909	3	14.3	3	81	18	54	2	32	0	65	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60522867--60522909	18	2.4	18	92	0	68	2	32	0	65	1.06
60522925--60522989	27	2.4	27	94	0	112	66	0	7	26	1.19
60523812--60523887	37	2.1	37	97	0	143	32	13	25	28	1.93
60536704--60536788	27	2.9	28	85	13	109	27	0	1	71	0.93
60536703--60536787	43	2.0	43	85	0	116	27	0	1	71	0.93
60536703--60536754	5	9.8	5	85	10	68	23	0	0	76	0.78
60536698--60536787	5	15.3	6	74	19	59	27	0	1	71	0.94
60539153--60539189	9	4.1	9	92	0	65	29	10	13	45	1.77
60541671--60541821	43	3.5	45	75	13	140	31	27	15	24	1.96
60541659--60541776	43	2.8	42	73	10	114	33	28	14	22	1.94
60544103--60544151	21	2.5	20	74	9	55	22	22	22	32	1.98
60545839--60545865	14	1.9	14	100	0	54	48	0	0	51	1.00
60546739--60546809	37	1.9	37	91	0	115	39	18	15	26	1.90
60556826--60556889	30	2.1	30	91	0	101	29	4	39	26	1.76
60562282--60562311	15	1.9	16	93	6	53	36	0	10	53	1.35
60563033--60563077	23	1.9	24	86	4	65	20	2	51	26	1.59
60563580--60563617	6	6.3	6	100	0	76	84	0	0	15	0.63
60563622--60563669	18	2.7	18	86	0	69	43	0	16	39	1.48
60563989--60564054	25	2.6	25	85	4	89	40	13	15	30	1.85
60566427--60566474	18	2.7	18	78	9	62	41	2	16	39	1.60
60574614--60574793	45	4.0	44	83	8	195	36	26	15	22	1.93
60574614--60574793	90	2.0	88	84	4	236	36	26	15	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60580618--60580794	39	4.5	39	91	0	264	28	2	21	47	1.65
60580666--60580775	22	5.4	22	67	21	78	26	2	21	49	1.63
60580779--60580832	23	2.3	23	96	0	99	37	3	22	37	1.72
60580618--60580814	39	5.1	40	84	7	219	29	2	21	46	1.65
60584205--60584245	20	2.2	20	86	8	59	51	2	4	41	1.36
60584211--60584261	21	2.6	19	82	14	59	52	1	3	41	1.31
60589060--60589233	93	1.9	93	92	2	296	27	17	25	29	1.98
60608668--60608744	28	2.8	28	84	4	84	31	16	24	27	1.97
60608695--60608762	28	2.4	28	80	4	75	26	19	25	29	1.98
60608928--60608958	15	2.1	15	100	0	62	38	6	32	22	1.80
60613261--60613291	15	2.1	15	93	0	53	38	3	32	25	1.72
60616487--60616527	21	2.0	21	85	0	55	73	2	19	4	1.13
60618087--60618160	8	9.1	8	73	12	53	68	4	1	25	1.15
60618076--60618136	16	3.7	16	71	16	52	68	3	1	26	1.14
60622502--60622532	16	1.9	16	100	0	62	45	6	0	48	1.28
60622720--60622757	18	2.1	19	90	5	60	60	0	5	34	1.19
60625137--60625307	3	57.0	3	100	0	342	66	0	33	0	0.92
60627456--60627502	3	15.7	3	100	0	94	68	0	31	0	0.90
60630730--60630767	19	2.2	18	86	13	53	50	5	7	36	1.54
60633894--60633950	27	2.1	27	83	0	69	19	29	15	35	1.93
60637363--60637413	22	2.3	20	80	12	57	64	1	3	29	1.22
60637518--60637566	22	2.1	24	85	7	66	71	4	4	20	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60639860--60639898	18	2.3	17	83	12	53	30	0	2	66	1.05
60643098--60643130	15	2.2	15	94	0	57	72	0	18	9	1.10
60643102--60643139	10	3.9	10	93	3	60	71	0	18	10	1.14
60647136--60647170	16	2.2	16	90	10	54	34	11	5	48	1.63
60647429--60647460	15	2.1	15	94	0	55	71	0	15	12	1.14
60649013--60649127	48	2.4	49	82	4	135	33	23	26	16	1.96
60649013--60649151	24	5.7	24	71	11	104	32	23	26	17	1.97
60651027--60651209	47	3.9	47	83	1	215	51	6	12	28	1.64
60653191--60653270	32	2.5	32	85	4	108	20	25	32	22	1.98
60656165--60656191	6	4.5	6	100	0	54	0	0	44	55	0.99
60672840--60672945	41	2.6	41	92	0	176	22	21	25	30	1.99
60675333--60675363	2	15.5	2	100	0	62	48	0	0	51	1.00
60679719--60679782	13	4.9	13	75	11	60	40	6	14	39	1.71
60679719--60679782	26	2.5	26	79	5	76	40	6	14	39	1.71
60681453--60681493	21	2.0	21	95	0	73	17	31	4	46	1.69
60681711--60681740	15	2.0	15	93	0	51	23	16	20	40	1.91
60690041--60690068	4	7.0	4	100	0	56	25	0	25	50	1.50
60696674--60696714	8	5.1	8	90	0	55	24	9	24	41	1.85
60696674--60696714	12	3.4	12	86	0	55	24	9	24	41	1.85
60704075--60704289	107	2.0	107	93	0	367	35	12	17	34	1.87
60708575--60708706	33	3.7	33	73	15	120	21	21	27	30	1.98
60708496--60708705	75	2.8	75	89	5	320	22	20	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60714545--60714636	26	3.5	25	80	12	96	33	27	16	22	1.95
60714545--60714652	52	2.1	53	85	5	148	32	29	15	22	1.95
60714564--60714652	26	3.4	26	79	0	106	32	30	16	20	1.95
60727404--60727436	11	2.9	12	86	13	52	66	0	0	33	0.92
60727638--60727667	14	2.1	15	93	6	53	50	10	0	40	1.36
60735818--60735881	27	2.3	27	81	7	67	31	28	15	25	1.96
60737414--60737477	27	2.4	27	84	5	85	42	21	21	14	1.88
60742093--60742126	1	34.0	1	100	0	68	0	0	0	100	0.00
60756055--60756099	19	2.4	18	82	7	54	60	6	0	33	1.23
60758629--60758670	20	2.1	20	95	0	75	40	45	0	14	1.45
60762735--60762819	23	3.7	23	84	4	100	40	18	11	29	1.86
60762755--60762819	12	5.5	12	71	10	53	41	20	13	24	1.88
60763561--60763616	19	2.8	20	76	15	62	60	3	0	35	1.14
60764500--60764553	19	2.8	19	86	5	65	37	5	1	55	1.34
60764621--60764685	19	3.2	20	77	14	71	43	3	0	53	1.16
60764635--60764692	20	2.9	20	87	7	91	48	3	0	48	1.18
60765321--60765376	18	3.1	18	78	17	53	67	3	3	25	1.22
60772187--60772270	29	3.0	28	77	16	84	29	22	8	39	1.83
60772827--60772893	12	5.6	12	78	5	73	77	0	22	0	0.77
60772833--60772893	11	5.3	11	79	11	68	78	0	21	0	0.75
60772824--60772893	23	3.0	23	85	2	86	77	0	22	0	0.78
60772833--60772892	16	3.6	16	68	18	50	78	0	21	0	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60773181--60773224	21	2.2	19	88	8	61	79	0	20	0	0.73
60773677--60774148	18	25.8	17	69	19	169	32	13	10	43	1.79
60773671--60773862	35	5.4	34	74	13	145	38	10	9	42	1.72
60773891--60774073	35	5.2	35	77	12	164	27	17	11	43	1.83
60773910--60774130	53	4.1	53	78	12	195	25	15	11	46	1.80
60778269--60778304	4	9.0	4	100	0	72	25	0	25	50	1.50
60780212--60780314	20	5.8	18	67	20	56	59	3	1	34	1.27
60780212--60780247	19	1.9	19	88	5	56	61	5	0	33	1.19
60781666--60781719	23	2.3	23	96	0	99	38	0	12	48	1.42
60781675--60781717	13	3.5	13	75	18	56	37	0	13	48	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210