genome.fa.s3.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  117  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39276924--39276960	17	2.2	17	100	0	74	51	0	27	21	1.48
39279270--39279329	24	2.4	26	70	13	63	31	15	16	36	1.90
39282933--39282963	16	1.9	16	93	0	53	9	9	9	70	1.33
39283802--39284238	218	2.0	218	100	0	874	31	16	18	34	1.93
39284828--39284886	20	3.0	20	83	11	77	40	3	5	50	1.41
39286760--39286798	7	5.6	7	93	0	69	64	10	0	25	1.25
39292063--39292095	15	2.1	16	88	5	50	6	3	18	72	1.18
39292379--39293631	44	27.8	44	70	11	555	28	21	18	31	1.97
39292422--39292680	138	1.9	137	82	0	329	26	22	19	31	1.98
39292430--39293641	181	6.7	182	87	3	1608	28	21	18	31	1.97
39293246--39293501	51	5.5	49	68	19	138	30	20	18	30	1.96
39293519--39293630	41	2.6	44	80	10	142	27	21	21	29	1.98
39295707--39295789	42	2.0	42	95	0	148	32	27	8	31	1.87
39301020--39301332	44	7.1	44	74	14	227	27	21	20	30	1.98
39301034--39301336	137	2.3	129	85	6	394	27	21	20	30	1.98
39301037--39301336	93	3.4	87	78	10	313	28	22	20	29	1.98
39302179--39302235	30	1.9	29	82	10	71	43	5	21	29	1.74
39302706--39302891	51	3.7	50	81	4	205	25	15	27	32	1.95
39304169--39304703	44	11.9	44	75	12	408	28	21	18	31	1.97
39304163--39304704	181	3.0	180	88	5	779	28	21	18	32	1.96
39304163--39304704	89	6.0	91	73	14	385	28	21	18	32	1.96
39306301--39306373	17	4.1	17	71	22	60	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39306296--39306368	26	2.7	26	83	12	76	53	0	0	46	1.00
39306305--39306370	25	2.5	26	82	12	80	51	0	0	48	1.00
39306347--39306383	19	1.9	19	88	0	56	62	2	0	35	1.10
39310490--39311364	437	2.0	437	100	0	1750	26	13	21	39	1.90
39313015--39313137	49	2.5	49	89	1	174	25	22	21	30	1.98
39313025--39313115	25	3.7	25	82	5	114	24	24	21	29	1.99
39313025--39313137	25	4.6	24	75	10	95	24	23	22	30	1.99
39313050--39313162	50	2.3	49	82	1	136	26	23	21	29	1.99
39320993--39321035	19	2.2	20	84	12	63	32	18	0	48	1.48
39321172--39321356	101	1.8	101	87	5	275	32	29	15	22	1.94
39321170--39321394	101	2.2	101	82	5	267	32	29	13	24	1.93
39321170--39321390	51	4.3	52	76	5	193	33	29	13	23	1.93
39332621--39332670	25	2.0	25	92	0	82	18	26	8	48	1.75
39333518--39333583	16	4.3	15	75	14	64	30	12	12	45	1.78
39335589--39336008	106	4.0	106	90	0	662	31	18	17	32	1.94
39347459--39347596	44	3.2	44	69	10	131	28	20	21	28	1.98
39347493--39347641	41	3.6	41	74	7	147	26	21	21	30	1.98
39347444--39347646	85	2.4	85	87	0	309	29	22	21	27	1.99
39347444--39347681	85	2.8	82	83	6	273	28	22	21	27	1.99
39347622--39347722	44	2.3	44	89	0	148	26	22	21	28	1.99
39347846--39347970	66	1.9	67	84	1	171	32	15	28	23	1.95
39349458--39349502	22	2.0	22	83	12	56	20	4	2	73	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39351327--39351429	36	2.9	36	89	0	170	41	17	15	25	1.88
39353972--39354045	25	3.0	25	77	0	76	32	18	25	22	1.97
39354030--39354082	24	2.2	24	79	0	61	41	20	20	16	1.90
39354103--39354150	23	2.1	23	84	0	60	31	18	31	18	1.95
39361858--39362001	24	5.8	24	79	4	119	33	22	27	16	1.96
39361858--39362016	26	6.3	26	78	9	129	32	23	27	16	1.96
39363649--39363822	37	4.7	36	82	8	190	41	27	13	17	1.87
39363648--39363822	74	2.4	74	87	1	244	41	27	13	17	1.87
39372078--39372116	14	2.8	13	92	3	51	53	2	5	38	1.37
39372086--39372116	14	2.2	14	100	0	62	48	0	6	45	1.28
39375116--39375212	49	2.0	50	83	2	124	40	18	15	25	1.90
39375326--39375418	35	2.7	35	76	6	98	38	16	18	26	1.91
39380939--39381264	161	2.0	162	98	0	627	29	17	20	32	1.95
39383290--39383324	17	2.0	18	88	5	54	28	22	22	25	1.99
39383607--39383639	17	1.9	17	88	11	50	36	6	33	24	1.80
39390684--39390847	43	3.9	43	84	4	199	30	26	15	28	1.96
39392935--39393013	38	2.1	38	100	0	158	45	7	25	21	1.78
39392939--39393023	38	2.2	38	93	4	145	42	10	23	23	1.85
39393833--39393999	54	3.1	54	87	4	232	35	11	26	25	1.91
39396515--39396590	37	2.1	36	83	11	93	55	2	2	39	1.28
39397866--39397901	16	2.2	16	100	0	72	30	8	8	52	1.61
39398618--39398667	24	2.1	24	100	0	100	34	22	8	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39416305--39416992	344	2.0	344	100	0	1376	39	8	9	42	1.69
39419154--39419318	82	2.0	83	98	1	323	35	9	13	41	1.77
39424840--39424880	19	2.2	19	90	0	64	39	4	9	46	1.58
39425009--39425043	16	2.2	16	100	0	70	37	5	11	45	1.64
39428687--39428727	19	2.2	19	95	0	73	39	4	14	41	1.67
39434255--39434283	15	1.9	15	100	0	58	27	24	6	41	1.80
39436666--39436741	37	2.1	36	83	11	93	53	3	2	39	1.33
39441153--39441256	51	2.0	52	96	1	192	39	14	4	41	1.67
39443474--39443542	29	2.4	29	85	4	88	39	21	20	18	1.93
39447253--39447305	9	5.5	10	80	13	58	64	0	0	35	0.94
39447253--39447297	19	2.4	19	81	3	56	62	0	0	37	0.96
39447254--39447318	28	2.3	28	84	10	80	60	1	1	36	1.16
39448231--39448266	15	2.3	16	95	4	65	52	0	8	38	1.32
39453634--39453666	17	1.9	18	88	11	52	12	27	18	42	1.85
39454908--39454943	18	2.0	18	88	0	54	19	5	13	61	1.52
39455520--39455562	16	2.7	16	85	0	59	39	11	18	30	1.86
39462323--39462349	12	2.2	12	100	0	54	37	22	14	25	1.93
39467323--39467438	56	2.1	56	90	0	178	39	17	9	33	1.82
39471733--39471777	13	3.7	13	80	17	60	60	15	8	15	1.59
39483380--39483521	51	2.8	51	86	2	189	28	16	24	30	1.97
39483380--39483521	49	2.9	48	86	6	160	28	16	24	30	1.97
39484895--39484938	19	2.4	19	88	3	63	29	18	22	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39492995--39493041	24	2.0	24	84	16	62	31	0	14	53	1.42
39499616--39499944	75	4.4	75	82	3	394	22	21	20	34	1.96
39503038--39503082	23	2.0	23	100	0	90	44	11	4	40	1.60
39509215--39509241	5	5.4	5	100	0	54	62	0	0	37	0.95
39515335--39515399	19	3.7	17	70	18	53	36	7	1	53	1.39
39516016--39516273	98	2.6	99	89	7	314	27	12	24	35	1.91
39516056--39516273	98	2.2	98	97	0	409	27	11	25	35	1.90
39518660--39518859	32	6.3	32	84	2	251	37	20	20	22	1.94
39518673--39518863	96	2.0	96	90	0	301	37	19	20	23	1.95
39518865--39518918	26	2.1	26	89	0	81	37	29	18	14	1.91
39518906--39518965	27	2.2	27	82	11	79	30	23	26	20	1.98
39519048--39519134	24	3.6	24	79	3	86	40	20	10	28	1.85
39519191--39519251	27	2.3	27	88	5	88	24	19	13	42	1.87
39521284--39521338	26	2.1	26	93	0	92	18	3	10	67	1.35
39524533--39524570	15	2.5	15	100	0	76	18	18	7	55	1.66
39528294--39528355	26	2.4	26	86	5	81	14	27	24	33	1.94
39535699--39535756	25	2.4	24	80	8	64	20	29	15	34	1.94
39535909--39536018	24	4.5	24	84	6	114	17	27	20	35	1.94
39537483--39537534	22	2.4	22	80	0	59	11	5	51	30	1.61
39537494--39537544	22	2.3	22	82	0	66	9	3	54	31	1.51
39538257--39538322	17	3.5	17	73	25	60	66	0	1	31	1.01
39538245--39538322	41	1.9	41	94	0	138	65	0	3	30	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39538253--39538316	11	6.1	11	73	23	66	60	0	1	37	1.06
39543255--39543285	9	3.4	9	90	0	53	38	22	12	25	1.90
39545521--39545551	16	1.9	16	100	0	62	32	29	6	32	1.83
39549300--39549384	44	2.0	44	81	6	102	34	23	23	18	1.97
39553612--39553649	18	2.2	17	86	13	51	31	2	0	65	1.06
39554064--39554210	75	2.0	75	86	0	204	45	8	10	35	1.69
39554186--39554413	115	2.0	116	85	6	311	42	7	3	45	1.50
39554295--39554581	136	2.1	135	89	6	429	41	9	4	44	1.57
39557277--39557360	25	3.4	25	70	9	73	26	21	22	29	1.99
39558862--39559005	51	2.9	50	78	1	162	32	22	17	27	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210