genome.fa.s3.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  135  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44685797--44685828	7	4.7	7	96	3	57	0	25	0	75	0.81
44685809--44685892	26	3.1	27	72	6	73	4	20	1	73	1.08
44685859--44685905	24	2.0	23	83	8	58	4	10	4	80	0.98
44690288--44690378	3	29.7	3	71	16	62	57	4	3	35	1.35
44690297--44690364	24	2.8	25	82	10	79	52	5	4	36	1.46
44698472--44698582	55	2.0	56	98	1	215	40	19	12	27	1.88
44701069--44701123	25	2.2	25	84	12	69	49	5	0	45	1.25
44701155--44702988	168	10.9	168	100	0	3668	24	19	17	38	1.92
44711715--44711764	24	2.1	24	100	0	100	22	34	24	20	1.97
44711795--44711837	22	2.0	22	100	0	86	25	37	13	23	1.92
44711918--44711975	29	2.0	29	89	3	89	18	24	37	18	1.94
44713792--44713821	14	2.1	15	93	6	53	66	0	6	26	1.16
44713852--44713883	15	2.3	15	89	10	50	75	0	0	25	0.81
44713892--44714040	4	36.5	4	66	14	63	67	2	9	20	1.29
44717001--44717075	27	2.8	27	88	6	100	28	18	9	44	1.81
44729453--44729490	16	2.4	16	87	12	60	84	2	13	0	0.73
44730374--44730436	27	2.3	27	75	0	63	38	7	3	50	1.47
44730414--44730463	19	2.6	19	80	0	64	38	8	0	54	1.30
44732541--44732589	24	2.0	25	84	4	64	28	22	8	40	1.82
44735669--44735728	5	11.8	5	84	10	77	83	0	16	0	0.65
44735657--44735729	27	2.6	27	85	8	85	83	2	13	0	0.75
44736916--44737175	137	1.9	137	85	0	358	33	18	18	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44737049--44737260	44	4.6	45	78	8	176	32	19	20	27	1.97
44739068--44739117	19	2.6	19	80	0	64	38	8	0	54	1.30
44739760--44739899	72	1.9	72	94	2	246	34	15	8	41	1.78
44749276--44749314	20	2.0	20	94	0	69	53	12	20	12	1.71
44756840--44756939	30	3.2	31	74	8	105	49	5	3	43	1.40
44758715--44758745	5	6.2	5	100	0	62	19	0	0	80	0.71
44759520--44759611	24	3.6	27	73	17	72	67	1	30	1	1.05
44759776--44759815	7	5.4	7	94	5	62	82	0	17	0	0.67
44759747--44759816	8	8.2	8	72	12	50	77	0	21	1	0.85
44760152--44760191	7	5.4	7	82	11	53	80	0	20	0	0.72
44760133--44760193	23	2.7	23	83	11	74	77	0	22	0	0.78
44760594--44760649	17	3.2	18	87	9	80	33	10	10	44	1.74
44760594--44760649	19	3.1	19	90	7	82	33	10	10	44	1.74
44766798--44766839	11	4.0	11	82	17	54	90	7	0	2	0.53
44766805--44766846	9	4.4	10	85	11	52	88	7	2	2	0.69
44766798--44766846	10	5.0	10	80	14	57	87	8	2	2	0.69
44766798--44766839	17	2.5	17	88	7	59	90	7	0	2	0.53
44767721--44769029	153	8.6	152	87	3	1530	27	17	21	33	1.96
44767700--44769095	75	18.3	75	82	5	1500	27	17	21	33	1.96
44769991--44770033	12	3.5	12	81	12	52	79	0	20	0	0.74
44769989--44770038	8	6.1	8	80	13	57	80	0	20	0	0.72
44770002--44770068	20	3.4	19	73	6	62	77	1	19	1	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44770207--44770273	6	11.3	6	70	13	50	77	0	19	2	0.89
44770202--44770241	12	3.2	12	86	10	53	77	0	22	0	0.77
44770202--44770276	26	3.0	24	79	13	71	78	0	18	2	0.86
44770202--44770275	15	4.9	15	73	17	64	78	0	18	2	0.87
44770389--44770422	17	2.0	17	88	0	50	76	0	23	0	0.79
44770608--44770667	11	5.5	11	82	11	70	81	0	18	0	0.69
44771043--44771081	19	2.1	18	86	13	53	35	7	10	46	1.67
44771626--44771669	22	2.0	22	95	0	79	9	20	27	43	1.82
44771707--44771973	43	6.2	43	87	0	363	29	33	17	19	1.95
44773464--44773700	118	2.0	119	98	0	458	46	15	17	20	1.84
44775685--44775880	97	2.0	99	96	2	369	30	19	13	36	1.90
44777521--44777694	81	2.1	83	82	5	203	45	26	1	26	1.60
44777693--44777730	14	2.7	14	91	0	67	31	34	0	34	1.58
44777686--44777764	28	2.8	29	78	3	72	36	37	1	24	1.64
44777837--44777874	14	2.7	14	87	0	58	44	26	0	28	1.54
44777932--44778131	41	4.9	41	95	1	357	30	30	21	17	1.96
44778172--44778282	40	2.8	39	83	1	132	17	27	20	35	1.95
44786068--44786115	19	2.6	18	80	9	60	29	2	4	64	1.23
44786102--44786183	18	4.6	18	75	18	66	32	2	1	63	1.15
44786156--44786198	3	14.3	3	85	9	61	32	0	2	65	1.06
44791329--44791370	20	2.1	20	86	0	57	57	2	2	38	1.25
44794492--44794524	18	1.9	17	88	11	50	30	6	3	60	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44794496--44794558	20	3.4	19	71	10	58	30	7	1	60	1.35
44794547--44794630	24	3.3	24	77	14	71	39	3	3	53	1.36
44799271--44799484	111	1.9	111	88	0	320	39	17	21	21	1.93
44801558--44801586	15	2.0	15	93	6	51	37	6	27	27	1.82
44806880--44807680	44	18.5	42	70	13	400	29	20	22	27	1.98
44806961--44807159	89	2.3	87	81	9	217	28	21	22	27	1.99
44806868--44807510	217	3.0	217	92	0	1056	29	21	22	26	1.99
44807263--44807680	172	2.4	172	87	1	624	29	20	21	27	1.98
44809188--44809220	18	1.9	17	88	11	50	30	6	3	60	1.36
44809192--44809254	20	3.4	19	71	10	58	30	7	1	60	1.35
44809243--44809326	24	3.3	24	77	14	71	39	3	3	53	1.36
44817839--44817951	41	2.8	41	81	8	124	20	19	26	33	1.96
44824035--44824063	14	2.1	14	100	0	58	20	27	20	31	1.98
44824049--44824317	50	5.4	50	87	0	358	22	29	20	27	1.98
44824121--44824363	50	4.9	48	90	3	202	22	31	19	26	1.98
44831853--44831884	4	8.0	4	100	0	64	25	0	0	75	0.81
44831985--44832643	326	2.0	326	91	0	1057	41	21	5	31	1.76
44833433--44833541	31	3.5	31	88	0	164	43	15	10	31	1.80
44853795--44853917	25	5.0	25	76	6	126	35	21	23	18	1.95
44853778--44853888	50	2.2	49	80	3	123	35	20	23	20	1.96
44858309--44858353	20	2.2	20	84	7	56	62	4	0	33	1.15
44858320--44858357	20	2.0	20	90	10	62	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44858548--44858602	19	2.9	19	79	12	60	34	0	38	27	1.57
44858552--44858604	9	5.7	9	78	8	61	39	0	37	22	1.54
44868872--44868925	27	2.0	27	96	0	99	20	7	16	55	1.65
44874991--44875047	26	2.2	26	93	0	96	42	10	17	29	1.83
44877644--44877668	12	2.1	12	100	0	50	24	16	8	52	1.70
44887049--44887218	73	2.3	73	90	0	268	28	21	24	25	1.99
44886937--44887632	187	3.8	188	81	7	804	28	21	24	26	1.99
44887118--44887323	114	1.8	114	91	2	342	26	20	25	26	1.99
44887407--44887584	73	2.4	73	89	1	259	28	20	24	26	1.99
44887542--44887749	104	2.0	103	87	2	301	28	20	26	25	1.99
44888298--44888615	41	7.5	42	77	11	294	18	20	27	33	1.96
44888375--44888473	52	1.9	52	89	4	155	16	23	27	33	1.95
44888334--44888593	93	2.9	93	79	14	289	18	21	26	33	1.97
44888287--44888556	134	2.0	134	89	4	420	18	21	28	31	1.97
44892598--44892884	43	6.7	43	86	1	371	23	20	29	26	1.99
44898247--44898428	50	3.6	50	87	0	256	21	31	22	24	1.98
44900505--44900646	75	1.9	75	94	0	248	21	17	23	38	1.93
44906499--44906524	12	2.2	12	100	0	52	53	7	0	38	1.30
44907509--44907534	12	2.2	12	100	0	52	53	7	0	38	1.30
44910486--44910548	32	1.9	33	93	3	110	44	19	3	33	1.66
44913107--44913294	68	2.8	68	88	2	261	27	23	12	36	1.91
44915547--44915590	22	2.0	23	90	4	72	6	31	40	20	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44916056--44916168	51	2.2	51	98	1	219	37	18	7	36	1.80
44927423--44927456	17	2.1	16	89	10	52	11	32	0	55	1.36
44928668--44928843	87	2.0	87	93	0	298	18	31	14	35	1.91
44929251--44929320	16	4.4	16	92	0	95	32	0	34	32	1.58
44943245--44943273	8	3.6	8	100	0	58	37	27	0	34	1.57
44944454--44944492	17	2.3	17	86	8	53	41	15	5	38	1.69
44945267--44945592	162	2.0	163	99	0	645	39	14	4	42	1.65
44948958--44949011	15	3.4	15	73	14	54	42	18	1	37	1.61
44948953--44949019	33	2.0	33	94	0	116	43	17	2	35	1.65
44948952--44948999	15	2.9	16	75	12	53	41	16	4	37	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210