genome.fa.s3.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  140  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46473760--46473972	62	3.5	62	85	0	275	31	9	15	43	1.79
46473760--46473974	93	2.3	92	86	0	286	31	9	16	42	1.79
46474114--46474347	43	5.4	43	93	0	378	24	15	25	33	1.95
46477406--46477434	12	2.3	13	94	5	51	20	6	6	65	1.40
46479562--46479607	24	1.9	24	86	8	67	30	6	21	41	1.78
46496606--46496671	26	2.7	23	88	11	89	65	6	1	27	1.25
46496606--46496671	23	2.8	21	86	13	69	65	6	1	27	1.25
46498516--46498587	34	2.1	34	84	2	90	26	15	19	38	1.91
46499207--46499239	16	2.0	17	94	5	59	30	24	12	33	1.91
46500493--46500524	16	2.0	16	100	0	64	31	25	6	37	1.81
46499561--46510839	613	18.0	612	70	14	5458	32	19	11	37	1.87
46499561--46514003	612	23.0	611	72	13	8502	32	19	11	37	1.87
46504490--46504560	29	2.4	29	77	9	81	14	42	2	40	1.60
46507025--46507095	29	2.4	29	75	9	72	12	40	4	42	1.62
46510819--46510888	29	2.4	29	83	4	79	14	42	1	41	1.54
46511751--46513386	631	2.6	634	83	5	1922	34	18	11	36	1.86
46514246--46514403	81	2.0	81	96	0	289	14	20	17	48	1.81
46517211--46517236	13	2.0	13	100	0	52	46	23	0	30	1.53
46518158--46518248	43	2.1	43	97	0	173	38	18	4	38	1.71
46519332--46519398	21	3.2	21	67	0	53	37	35	2	23	1.71
46519318--46519437	42	2.9	42	80	5	136	36	35	1	25	1.66
46524862--46524956	25	3.8	25	83	5	120	34	20	20	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46534255--46534304	26	1.9	26	84	8	66	16	4	6	74	1.17
46542247--46542291	23	2.0	23	100	0	90	33	26	8	31	1.87
46543879--46543921	10	4.2	10	80	13	52	72	0	6	20	1.08
46543879--46543950	27	2.7	25	75	14	72	76	0	5	18	0.97
46543892--46543933	17	2.6	16	80	3	57	76	0	7	16	1.00
46558931--46559159	28	8.2	28	73	5	160	32	15	24	27	1.95
46558931--46559149	83	2.6	84	79	8	221	34	14	23	27	1.94
46558931--46559159	56	4.1	55	73	6	183	32	15	24	27	1.95
46559142--46559205	27	2.4	27	84	5	94	37	15	21	25	1.93
46559195--46559253	27	2.3	24	77	11	64	35	5	32	27	1.79
46570953--46571042	28	3.2	28	78	9	94	34	17	23	24	1.96
46570976--46571042	27	2.4	28	85	14	95	34	17	26	20	1.96
46570976--46571100	28	4.5	28	77	11	105	33	19	24	23	1.97
46587496--46587521	10	2.6	10	100	0	52	50	7	0	42	1.31
46590262--46590303	21	2.0	22	90	4	68	45	2	0	52	1.13
46591219--46591259	19	2.2	19	86	0	55	56	7	17	19	1.64
46593811--46593847	5	7.6	5	85	14	51	13	0	2	83	0.74
46594524--46594551	3	9.3	3	100	0	56	32	0	0	67	0.91
46595786--46595847	27	2.3	27	91	0	97	25	25	9	38	1.86
46595799--46595872	27	2.7	27	85	0	76	25	27	12	35	1.91
46605449--46605482	17	2.0	17	94	0	59	32	0	5	61	1.20
46605485--46605509	13	1.9	13	100	0	50	80	0	12	8	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46610811--46610855	20	2.3	19	80	3	54	75	6	4	13	1.15
46611196--46611229	12	2.8	12	81	0	50	55	5	0	38	1.24
46612782--46612891	44	2.7	40	79	12	114	29	22	23	24	1.99
46612907--46612971	34	1.9	34	96	0	121	33	21	16	27	1.95
46612941--46613408	132	3.6	132	89	4	709	23	24	20	31	1.98
46618507--46619474	482	2.0	483	98	0	1857	26	23	16	32	1.96
46621714--46621759	24	1.9	24	86	8	67	10	23	17	47	1.79
46625382--46625426	20	2.3	19	80	3	54	75	6	4	13	1.15
46626036--46626080	20	2.3	19	80	3	54	75	6	4	13	1.15
46630849--46630937	45	2.0	45	95	0	160	39	15	13	31	1.86
46631008--46631043	16	2.2	16	100	0	72	25	0	36	38	1.56
46631024--46631114	45	2.0	45	85	2	121	27	6	28	37	1.82
46631279--46631313	18	2.0	17	88	5	52	54	0	0	45	0.99
46646043--46646085	11	4.0	11	81	3	52	16	4	9	69	1.31
46651241--46651305	28	2.2	28	76	10	69	63	4	1	30	1.24
46652825--46652950	44	2.8	44	79	10	141	24	21	21	32	1.98
46653105--46653288	99	1.9	100	83	3	246	25	24	21	28	1.99
46655684--46656475	394	2.0	394	89	0	1226	30	23	18	28	1.97
46682239--46682264	11	2.4	11	100	0	52	80	0	0	19	0.71
46687371--46687404	14	2.6	13	86	13	52	52	0	2	44	1.16
46687436--46687488	23	2.3	23	90	0	88	54	7	11	26	1.62
46697478--46697607	43	3.0	43	73	16	108	30	30	17	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46699599--46699729	43	3.1	42	82	2	145	28	25	18	28	1.98
46699670--46699837	43	3.9	44	80	5	173	27	32	15	24	1.95
46699684--46699860	43	4.1	43	73	12	123	26	30	15	27	1.96
46703456--46703528	35	2.1	35	80	14	80	39	2	6	50	1.43
46703543--46703584	19	2.2	19	91	0	66	14	2	2	80	0.90
46703562--46703586	13	1.9	13	100	0	50	12	0	0	88	0.53
46704322--46704504	41	4.5	40	87	6	260	29	33	19	18	1.95
46705114--46705237	43	2.9	43	77	15	114	30	28	18	22	1.97
46706108--46706136	14	2.1	14	100	0	58	27	6	0	65	1.18
46718847--46718962	33	3.4	33	71	9	106	52	3	1	42	1.28
46718885--46718957	30	2.3	32	77	11	89	56	2	1	39	1.22
46718939--46719014	31	2.4	31	77	6	80	47	10	0	42	1.38
46719601--46719707	45	2.5	43	82	11	125	32	2	29	34	1.72
46725316--46725348	2	17.0	2	93	6	59	48	0	0	51	1.00
46732933--46733079	73	2.0	73	100	0	294	37	23	12	27	1.90
46748174--46748204	5	6.2	5	100	0	62	19	41	19	19	1.90
46748262--46748294	5	6.6	5	100	0	66	0	60	0	39	0.97
46749328--46749367	16	2.5	16	88	8	55	35	5	15	45	1.68
46763006--46763030	2	12.5	2	100	0	50	52	0	0	48	1.00
46763613--46763928	157	2.0	158	99	0	625	34	7	4	53	1.49
46763995--46764047	21	2.4	22	75	18	56	54	0	7	37	1.29
46766061--46766183	32	3.8	32	98	0	237	26	3	18	52	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46767307--46767344	20	1.9	20	100	0	76	47	0	2	50	1.15
46767430--46767473	20	2.3	19	88	7	70	52	11	6	29	1.63
46767595--46767653	24	2.5	24	91	0	100	23	0	16	59	1.37
46767633--46767669	15	2.5	15	86	0	56	13	0	29	56	1.37
46769351--46769391	19	2.2	19	91	8	66	26	9	12	51	1.70
46770294--46770739	50	8.5	50	91	4	538	26	22	28	22	1.99
46773488--46773523	18	2.0	18	88	0	54	61	8	0	30	1.26
46785638--46785673	18	2.1	17	89	5	54	30	30	8	30	1.87
46788402--46788442	12	3.7	12	78	15	52	46	2	0	51	1.14
46792556--46792619	19	3.3	19	78	4	65	29	31	18	20	1.96
46794410--46794434	2	12.5	2	100	0	50	52	0	0	48	1.00
46795612--46795685	23	3.2	23	81	5	87	62	31	4	2	1.28
46795624--46795687	12	5.5	12	74	7	69	62	32	3	1	1.20
46796222--46796353	70	1.9	70	96	0	246	33	24	6	36	1.80
46801413--46801498	7	11.9	7	73	20	61	70	0	6	22	1.10
46801412--46801494	17	4.7	17	76	11	71	71	0	7	21	1.10
46816595--46816638	21	2.1	21	86	0	61	18	25	20	36	1.95
46817490--46817664	44	4.0	44	100	0	350	16	22	32	29	1.95
46820983--46821033	26	2.0	26	100	0	102	15	0	39	45	1.47
46821891--46822137	39	6.3	39	86	2	300	38	17	13	29	1.89
46821890--46822137	117	2.1	116	87	5	347	38	17	14	29	1.89
46821890--46822189	117	2.6	117	81	6	281	38	18	14	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46823165--46823206	17	2.5	17	88	0	57	38	2	9	50	1.48
46830972--46831004	18	1.9	18	88	11	52	39	0	12	48	1.40
46833600--46833708	24	4.5	24	76	6	94	21	30	19	29	1.97
46833865--46833912	25	2.0	24	84	12	62	22	18	25	33	1.97
46843423--46843651	50	4.6	50	81	1	228	27	21	27	22	1.99
46843423--46843602	100	1.8	100	85	2	254	26	21	29	22	1.99
46860844--46860884	20	2.0	20	100	0	82	39	17	9	34	1.82
46861080--46861138	23	2.6	23	88	0	82	32	22	25	20	1.98
46861080--46861148	23	3.0	22	81	12	77	33	21	24	20	1.97
46861227--46861371	72	2.0	72	97	0	272	40	18	11	28	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210