genome.fa.s3.2.7.7.80.10.50.1000.189.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  189  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62717225--62717271	18	2.7	18	74	6	53	42	4	36	17	1.68
62718691--62718747	26	2.2	26	87	6	80	36	14	5	43	1.67
62718705--62718766	26	2.4	26	91	0	97	33	11	11	43	1.76
62718729--62718789	26	2.3	26	83	5	70	27	11	14	45	1.80
62723725--62723864	50	2.8	49	90	4	217	30	27	17	25	1.97
62727330--62727548	31	7.4	31	66	14	147	26	27	14	31	1.95
62727312--62727585	59	4.6	59	92	1	433	25	27	12	33	1.92
62727315--62727583	31	9.2	27	66	15	117	26	27	13	33	1.93
62730971--62730996	12	2.2	12	100	0	52	34	15	7	42	1.75
62731575--62731613	21	1.9	21	89	5	62	20	10	2	66	1.33
62732485--62732536	23	2.3	23	89	0	77	42	21	9	26	1.83
62732685--62732752	30	2.2	31	84	2	84	47	7	19	26	1.75
62733636--62734551	467	2.0	466	97	1	1730	39	6	18	36	1.76
62737990--62738055	31	2.1	31	100	0	132	34	6	21	37	1.78
62745443--62745934	244	2.0	243	99	0	975	33	28	11	26	1.92
62748333--62748401	26	2.7	26	82	6	88	21	11	26	40	1.87
62749547--62749588	21	2.0	21	85	4	57	19	16	45	19	1.86
62750015--62750057	19	2.4	17	80	7	50	32	0	18	48	1.48
62750273--62750310	10	4.0	10	86	10	53	44	7	0	47	1.32
62750977--62751010	17	2.0	17	88	0	50	35	0	0	64	0.94
62751121--62751201	33	2.6	31	84	9	94	48	14	7	29	1.71
62764845--62764897	26	2.1	26	82	10	65	26	1	3	67	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62772601--62772627	14	1.9	14	100	0	54	14	29	18	37	1.91
62776114--62776264	42	3.6	42	92	0	248	21	25	34	18	1.96
62797389--62797528	27	5.3	27	78	5	133	40	22	17	19	1.91
62797409--62797528	27	4.5	27	80	2	134	40	23	17	18	1.91
62797389--62797528	53	2.6	54	81	3	158	40	22	17	19	1.91
62797462--62797539	27	2.9	27	82	3	95	38	21	17	21	1.93
62797912--62797981	28	2.5	28	90	2	106	27	22	17	32	1.96
62807453--62807490	19	2.0	20	84	5	51	28	5	2	63	1.30
62807531--62807574	22	2.0	22	82	8	54	38	4	6	50	1.50
62807531--62807573	23	1.9	22	85	4	59	37	4	6	51	1.50
62811885--62811941	14	4.2	13	80	13	62	75	3	7	14	1.14
62811888--62811969	14	5.9	14	75	13	53	80	4	6	8	1.01
62811881--62811937	27	2.1	27	87	12	82	73	5	5	15	1.19
62811903--62812007	35	3.2	33	75	19	103	77	4	7	10	1.12
62811939--62811972	15	2.3	15	89	0	50	91	5	2	0	0.51
62812889--62812925	15	2.4	16	95	4	67	75	0	8	16	1.02
62814276--62814500	44	5.2	44	66	14	133	25	23	26	25	2.00
62814320--62814461	43	3.3	42	67	14	117	27	26	21	23	1.99
62814189--62814616	87	4.9	86	88	2	599	25	23	25	25	2.00
62814189--62814616	175	2.5	173	87	3	610	25	23	25	25	2.00
62814482--62814620	45	3.1	44	67	15	124	28	23	25	23	2.00
62814847--62815029	44	4.2	44	65	13	106	28	19	22	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62815259--62815585	44	7.4	44	67	13	116	30	16	23	29	1.96
62814842--62815647	132	6.1	132	89	1	1114	29	18	22	29	1.97
62816071--62816110	14	2.8	14	85	14	55	80	0	0	20	0.72
62816071--62816113	19	2.3	19	88	11	63	79	0	0	20	0.74
62816071--62816110	5	8.4	5	86	13	50	80	0	0	20	0.72
62817270--62817305	18	2.1	18	89	5	56	36	2	0	61	1.11
62819870--62819928	25	2.4	25	82	0	64	30	16	25	27	1.97
62831302--62831330	6	4.8	6	100	0	58	51	0	31	17	1.45
62835936--62836082	31	4.8	31	76	6	122	44	21	11	22	1.84
62838530--62838762	116	2.0	116	94	0	403	37	17	22	23	1.94
62851572--62851670	50	2.0	50	87	0	144	25	24	27	23	2.00
62856256--62856433	27	6.6	27	81	3	171	25	13	19	42	1.87
62866155--62866237	26	3.2	26	84	3	105	42	18	6	33	1.74
62870957--62871072	60	1.9	59	81	8	137	42	5	24	28	1.76
62871600--62871640	21	2.0	21	85	9	57	36	19	26	17	1.94
62882021--62882267	50	4.8	50	77	4	192	27	22	27	23	1.99
62889569--62889815	50	4.8	50	77	4	192	27	20	27	23	1.99
62889580--62889766	100	1.8	103	83	6	254	26	20	28	24	1.99
62900320--62900413	31	3.1	31	73	4	102	45	4	23	26	1.71
62903498--62903686	93	2.0	93	90	0	297	10	20	11	58	1.61
62907769--62907808	22	1.9	22	85	10	57	55	7	7	30	1.56
62919161--62919293	50	2.5	54	84	10	177	24	16	31	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62919162--62919343	50	3.5	50	78	7	132	26	17	29	26	1.97
62919597--62919635	20	2.0	20	90	10	62	56	5	23	15	1.59
62930732--62930794	24	2.5	25	89	10	101	42	12	22	22	1.87
62935603--62935635	15	2.1	16	88	5	50	36	0	12	51	1.39
62942176--62942202	14	1.9	14	100	0	54	0	40	0	59	0.98
62943080--62943344	27	9.8	27	86	4	302	41	19	19	19	1.90
62943508--62943559	26	2.0	26	84	0	68	13	21	25	40	1.89
62950005--62950035	14	2.3	14	94	5	55	0	38	0	61	0.96
62950877--62950987	27	4.1	27	81	3	127	39	21	18	20	1.92
62950877--62950996	54	2.2	53	85	4	152	40	20	17	21	1.92
62951169--62951218	26	1.9	26	91	0	82	12	28	24	36	1.91
62951768--62951810	20	2.2	20	95	0	77	46	11	16	25	1.80
62960870--62960933	25	2.6	25	84	0	74	20	21	25	32	1.97
62960887--62960969	25	3.4	24	79	3	67	24	21	24	30	1.99
62963993--62964034	21	2.0	21	86	4	59	21	26	9	42	1.83
62977743--62977776	11	3.1	11	86	0	50	44	26	8	20	1.81
62983707--62983861	81	1.9	81	95	0	283	37	11	14	36	1.83
62987591--62987855	27	9.8	27	86	0	332	40	21	19	18	1.91
62990958--62990983	13	2.0	13	100	0	52	30	15	23	30	1.95
63004486--63004571	35	2.5	33	81	9	93	33	16	25	24	1.95
63004488--63004737	105	2.5	101	79	10	267	33	17	25	24	1.96
63004678--63004750	33	2.2	33	80	0	83	35	17	26	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63013361--63013415	20	2.7	21	83	5	69	12	32	20	34	1.90
63015870--63015916	15	3.1	16	82	17	64	17	46	0	36	1.48
63015881--63015922	19	2.2	19	86	0	57	14	47	0	38	1.44
63026177--63026485	154	2.0	155	95	1	559	27	15	17	39	1.90
63028404--63028637	50	4.7	49	88	3	324	20	29	22	26	1.98
63028974--63029031	30	1.9	31	82	6	75	27	22	6	43	1.79
63031981--63032024	18	2.4	18	85	7	63	47	20	2	29	1.62
63031996--63032057	31	2.0	31	84	12	83	46	24	1	27	1.62
63038997--63039035	2	19.5	2	83	0	51	7	0	43	48	1.31
63038997--63039034	8	4.8	8	96	0	67	7	0	42	50	1.31
63043051--63043086	14	2.5	15	90	9	65	36	36	22	5	1.78
63045036--63045060	13	1.9	13	100	0	50	40	16	0	44	1.47
63046971--63047025	23	2.4	22	79	8	56	16	10	3	69	1.32
63048573--63048606	14	2.5	14	95	4	61	50	35	0	14	1.44
63052346--63052481	53	2.5	55	84	8	174	30	30	0	38	1.57
63052774--63053382	309	2.0	309	100	0	1218	32	14	13	39	1.85
63053999--63054037	19	2.1	19	95	4	71	53	5	10	30	1.56
63054082--63054114	14	2.4	14	94	0	57	24	6	0	69	1.10
63055911--63055947	3	12.3	3	100	0	74	32	0	0	67	0.91
63056554--63056582	2	14.5	2	100	0	58	51	0	0	48	1.00
63060856--63060983	63	2.0	62	90	1	202	29	11	19	39	1.87
63062111--63062144	17	2.0	17	100	0	68	52	11	11	23	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63064044--63064078	2	17.5	2	100	0	70	48	0	0	51	1.00
63064280--63064325	12	3.6	13	91	5	51	45	2	0	52	1.13
63064290--63064327	12	3.2	12	96	0	67	47	0	0	52	1.00
63066144--63066168	10	2.5	10	100	0	50	32	0	0	68	0.90
63084754--63084990	50	4.7	50	85	2	296	26	23	28	21	1.99
63084754--63084969	100	2.2	100	91	0	342	26	24	28	20	1.99
63085239--63085277	12	3.2	12	85	0	51	51	5	23	20	1.67
63090070--63090190	40	3.0	40	90	0	188	35	19	31	14	1.91
63090022--63090190	80	2.1	80	85	0	221	32	18	33	15	1.93
63090105--63090167	20	3.2	20	74	17	76	34	20	31	12	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210